Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17995

Experiment: Paraquat dichloride 0.032 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17990 and AO353_17995 are separated by 65 nucleotidesAO353_17995 and AO353_18000 overlap by 4 nucleotidesAO353_18000 and AO353_18005 overlap by 4 nucleotides AO353_17990: AO353_17990 - MFS transporter, at 3,960,953 to 3,962,245 _17990 AO353_17995: AO353_17995 - hypothetical protein, at 3,962,311 to 3,963,063 _17995 AO353_18000: AO353_18000 - allophanate hydrolase, at 3,963,060 to 3,963,764 _18000 AO353_18005: AO353_18005 - allophanate hydrolase, at 3,963,761 to 3,964,678 _18005 Position (kb) 3962 3963 3964Strain fitness (log2 ratio) -2 -1 0 1 2at 3961.313 kb on + strand, within AO353_17990at 3961.650 kb on - strand, within AO353_17990at 3961.727 kb on + strand, within AO353_17990at 3961.727 kb on + strand, within AO353_17990at 3961.728 kb on - strand, within AO353_17990at 3961.728 kb on - strand, within AO353_17990at 3961.783 kb on - strand, within AO353_17990at 3961.783 kb on - strand, within AO353_17990at 3961.783 kb on - strand, within AO353_17990at 3961.783 kb on - strand, within AO353_17990at 3961.783 kb on - strand, within AO353_17990at 3961.783 kb on - strand, within AO353_17990at 3961.826 kb on + strand, within AO353_17990at 3961.827 kb on - strand, within AO353_17990at 3961.835 kb on + strand, within AO353_17990at 3961.835 kb on + strand, within AO353_17990at 3961.836 kb on - strand, within AO353_17990at 3961.925 kb on + strand, within AO353_17990at 3961.925 kb on + strand, within AO353_17990at 3961.925 kb on + strand, within AO353_17990at 3961.925 kb on + strand, within AO353_17990at 3961.925 kb on + strand, within AO353_17990at 3961.925 kb on + strand, within AO353_17990at 3962.072 kb on + strand, within AO353_17990at 3962.073 kb on - strand, within AO353_17990at 3962.136 kb on + strandat 3962.177 kb on + strandat 3962.177 kb on + strandat 3962.184 kb on + strandat 3962.184 kb on + strandat 3962.184 kb on + strandat 3962.184 kb on + strandat 3962.185 kb on - strandat 3962.185 kb on - strandat 3962.185 kb on - strandat 3962.244 kb on - strandat 3962.244 kb on - strandat 3962.244 kb on - strandat 3962.250 kb on + strandat 3962.280 kb on + strandat 3962.289 kb on - strandat 3962.303 kb on + strandat 3962.303 kb on + strandat 3962.304 kb on - strandat 3962.324 kb on + strandat 3962.325 kb on - strandat 3962.392 kb on + strand, within AO353_17995at 3962.393 kb on - strand, within AO353_17995at 3962.506 kb on + strand, within AO353_17995at 3962.545 kb on + strand, within AO353_17995at 3962.545 kb on + strand, within AO353_17995at 3962.546 kb on - strand, within AO353_17995at 3962.546 kb on - strand, within AO353_17995at 3962.546 kb on - strand, within AO353_17995at 3962.578 kb on + strand, within AO353_17995at 3962.632 kb on + strand, within AO353_17995at 3962.633 kb on - strand, within AO353_17995at 3962.633 kb on - strand, within AO353_17995at 3962.656 kb on + strand, within AO353_17995at 3962.656 kb on + strand, within AO353_17995at 3962.656 kb on + strand, within AO353_17995at 3962.656 kb on + strand, within AO353_17995at 3962.656 kb on + strand, within AO353_17995at 3962.656 kb on + strand, within AO353_17995at 3962.657 kb on - strand, within AO353_17995at 3962.657 kb on - strand, within AO353_17995at 3962.657 kb on - strand, within AO353_17995at 3962.716 kb on + strand, within AO353_17995at 3962.716 kb on + strand, within AO353_17995at 3962.830 kb on + strand, within AO353_17995at 3962.830 kb on + strand, within AO353_17995at 3962.830 kb on + strand, within AO353_17995at 3962.830 kb on + strand, within AO353_17995at 3962.830 kb on + strand, within AO353_17995at 3962.831 kb on - strand, within AO353_17995at 3962.831 kb on - strand, within AO353_17995at 3962.987 kb on + strand, within AO353_17995at 3962.988 kb on - strandat 3962.988 kb on - strandat 3963.210 kb on + strand, within AO353_18000at 3963.210 kb on + strand, within AO353_18000at 3963.210 kb on + strand, within AO353_18000at 3963.210 kb on + strandat 3963.210 kb on + strand, within AO353_18000at 3963.210 kb on + strand, within AO353_18000at 3963.210 kb on + strand, within AO353_18000at 3963.210 kb on + strand, within AO353_18000at 3963.210 kb on + strand, within AO353_18000at 3963.210 kb on + strand, within AO353_18000at 3963.210 kb on + strand, within AO353_18000at 3963.211 kb on - strand, within AO353_18000at 3963.211 kb on - strand, within AO353_18000at 3963.211 kb on - strand, within AO353_18000at 3963.211 kb on - strand, within AO353_18000at 3963.211 kb on - strand, within AO353_18000at 3963.211 kb on - strand, within AO353_18000at 3963.211 kb on - strand, within AO353_18000at 3963.211 kb on - strand, within AO353_18000at 3963.211 kb on - strand, within AO353_18000at 3963.212 kb on + strand, within AO353_18000at 3963.212 kb on + strand, within AO353_18000at 3963.212 kb on + strand, within AO353_18000at 3963.212 kb on + strand, within AO353_18000at 3963.212 kb on + strand, within AO353_18000at 3963.212 kb on + strand, within AO353_18000at 3963.213 kb on - strand, within AO353_18000at 3963.213 kb on - strandat 3963.213 kb on - strand, within AO353_18000at 3963.213 kb on - strand, within AO353_18000at 3963.213 kb on - strand, within AO353_18000at 3963.213 kb on - strand, within AO353_18000at 3963.215 kb on + strand, within AO353_18000at 3963.215 kb on + strand, within AO353_18000at 3963.216 kb on - strand, within AO353_18000at 3963.216 kb on - strand, within AO353_18000at 3963.345 kb on + strand, within AO353_18000at 3963.438 kb on + strand, within AO353_18000at 3963.438 kb on + strand, within AO353_18000at 3963.439 kb on - strand, within AO353_18000at 3963.582 kb on + strand, within AO353_18000at 3963.660 kb on + strand, within AO353_18000at 3963.689 kb on - strand, within AO353_18000at 3963.828 kb on + strandat 3963.901 kb on + strand, within AO353_18005at 3963.902 kb on - strand, within AO353_18005at 3964.036 kb on + strand, within AO353_18005at 3964.037 kb on - strand, within AO353_18005

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/mL
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3,961,313 + AO353_17990 0.28 +1.2
3,961,650 - AO353_17990 0.54 +0.8
3,961,727 + AO353_17990 0.60 -0.2
3,961,727 + AO353_17990 0.60 -0.8
3,961,728 - AO353_17990 0.60 +0.2
3,961,728 - AO353_17990 0.60 +0.1
3,961,783 - AO353_17990 0.64 -1.2
3,961,783 - AO353_17990 0.64 -1.1
3,961,783 - AO353_17990 0.64 -1.7
3,961,783 - AO353_17990 0.64 -1.9
3,961,783 - AO353_17990 0.64 -1.1
3,961,783 - AO353_17990 0.64 -0.3
3,961,826 + AO353_17990 0.68 -1.6
3,961,827 - AO353_17990 0.68 +0.1
3,961,835 + AO353_17990 0.68 -0.2
3,961,835 + AO353_17990 0.68 +1.0
3,961,836 - AO353_17990 0.68 -0.5
3,961,925 + AO353_17990 0.75 -1.1
3,961,925 + AO353_17990 0.75 +1.0
3,961,925 + AO353_17990 0.75 +0.4
3,961,925 + AO353_17990 0.75 -0.6
3,961,925 + AO353_17990 0.75 -1.4
3,961,925 + AO353_17990 0.75 +0.0
3,962,072 + AO353_17990 0.87 +1.4
3,962,073 - AO353_17990 0.87 -0.5
3,962,136 + +1.1
3,962,177 + -0.4
3,962,177 + +0.4
3,962,184 + -1.4
3,962,184 + -1.6
3,962,184 + -0.3
3,962,184 + +0.2
3,962,185 - +0.3
3,962,185 - -0.7
3,962,185 - -0.9
3,962,244 - +0.4
3,962,244 - -0.2
3,962,244 - +0.4
3,962,250 + -0.9
3,962,280 + +0.0
3,962,289 - +0.3
3,962,303 + -0.8
3,962,303 + +0.5
3,962,304 - -0.1
3,962,324 + -1.8
3,962,325 - -0.3
3,962,392 + AO353_17995 0.11 -1.2
3,962,393 - AO353_17995 0.11 -1.7
3,962,506 + AO353_17995 0.26 -0.6
3,962,545 + AO353_17995 0.31 +0.5
3,962,545 + AO353_17995 0.31 -0.8
3,962,546 - AO353_17995 0.31 -1.3
3,962,546 - AO353_17995 0.31 -1.1
3,962,546 - AO353_17995 0.31 +0.9
3,962,578 + AO353_17995 0.35 -1.8
3,962,632 + AO353_17995 0.43 -1.4
3,962,633 - AO353_17995 0.43 -1.1
3,962,633 - AO353_17995 0.43 -0.1
3,962,656 + AO353_17995 0.46 -0.6
3,962,656 + AO353_17995 0.46 -0.8
3,962,656 + AO353_17995 0.46 -1.0
3,962,656 + AO353_17995 0.46 -0.3
3,962,656 + AO353_17995 0.46 +0.5
3,962,656 + AO353_17995 0.46 +1.7
3,962,657 - AO353_17995 0.46 -2.2
3,962,657 - AO353_17995 0.46 +1.4
3,962,657 - AO353_17995 0.46 -1.6
3,962,716 + AO353_17995 0.54 +0.8
3,962,716 + AO353_17995 0.54 -1.0
3,962,830 + AO353_17995 0.69 -1.1
3,962,830 + AO353_17995 0.69 -0.0
3,962,830 + AO353_17995 0.69 -0.5
3,962,830 + AO353_17995 0.69 -1.3
3,962,830 + AO353_17995 0.69 -0.1
3,962,831 - AO353_17995 0.69 -0.1
3,962,831 - AO353_17995 0.69 +0.0
3,962,987 + AO353_17995 0.90 +1.4
3,962,988 - +0.0
3,962,988 - +1.5
3,963,210 + AO353_18000 0.21 +1.4
3,963,210 + AO353_18000 0.21 -0.6
3,963,210 + AO353_18000 0.21 -0.6
3,963,210 + +0.4
3,963,210 + AO353_18000 0.21 +1.5
3,963,210 + AO353_18000 0.21 -0.7
3,963,210 + AO353_18000 0.21 +0.1
3,963,210 + AO353_18000 0.21 -2.2
3,963,210 + AO353_18000 0.21 -0.2
3,963,210 + AO353_18000 0.21 +2.1
3,963,210 + AO353_18000 0.21 +0.7
3,963,211 - AO353_18000 0.21 -0.8
3,963,211 - AO353_18000 0.21 +0.4
3,963,211 - AO353_18000 0.21 -0.1
3,963,211 - AO353_18000 0.21 -1.2
3,963,211 - AO353_18000 0.21 -1.2
3,963,211 - AO353_18000 0.21 -1.0
3,963,211 - AO353_18000 0.21 +0.0
3,963,211 - AO353_18000 0.21 -0.8
3,963,211 - AO353_18000 0.21 -0.9
3,963,212 + AO353_18000 0.22 -0.9
3,963,212 + AO353_18000 0.22 -0.2
3,963,212 + AO353_18000 0.22 -0.6
3,963,212 + AO353_18000 0.22 -1.0
3,963,212 + AO353_18000 0.22 -1.2
3,963,212 + AO353_18000 0.22 -1.0
3,963,213 - AO353_18000 0.22 -1.4
3,963,213 - +1.4
3,963,213 - AO353_18000 0.22 -0.6
3,963,213 - AO353_18000 0.22 -0.2
3,963,213 - AO353_18000 0.22 -0.9
3,963,213 - AO353_18000 0.22 -0.4
3,963,215 + AO353_18000 0.22 +0.7
3,963,215 + AO353_18000 0.22 -0.7
3,963,216 - AO353_18000 0.22 +0.1
3,963,216 - AO353_18000 0.22 -0.6
3,963,345 + AO353_18000 0.40 -0.5
3,963,438 + AO353_18000 0.54 -2.3
3,963,438 + AO353_18000 0.54 +0.1
3,963,439 - AO353_18000 0.54 -1.5
3,963,582 + AO353_18000 0.74 -1.0
3,963,660 + AO353_18000 0.85 +1.1
3,963,689 - AO353_18000 0.89 -1.4
3,963,828 + -0.5
3,963,901 + AO353_18005 0.15 -2.5
3,963,902 - AO353_18005 0.15 -1.3
3,964,036 + AO353_18005 0.30 -0.6
3,964,037 - AO353_18005 0.30 +0.4

Or see this region's nucleotide sequence