Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12880

Experiment: Paraquat dichloride 0.032 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12875 and AO353_12880 are separated by 1 nucleotidesAO353_12880 and AO353_12885 overlap by 1 nucleotides AO353_12875: AO353_12875 - ADP-heptose--LPS heptosyltransferase, at 2,850,864 to 2,851,898 _12875 AO353_12880: AO353_12880 - ADP-heptose--LPS heptosyltransferase, at 2,851,900 to 2,852,973 _12880 AO353_12885: AO353_12885 - glucosyltransferase I RfaG, at 2,852,973 to 2,854,094 _12885 Position (kb) 2851 2852 2853Strain fitness (log2 ratio) -3 -2 -1 0 1at 2851.861 kb on + strandat 2851.861 kb on + strandat 2851.861 kb on + strandat 2851.896 kb on + strandat 2852.383 kb on + strand, within AO353_12880at 2852.431 kb on + strand, within AO353_12880at 2852.431 kb on + strand, within AO353_12880

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/mL
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2,851,861 + +0.4
2,851,861 + +0.2
2,851,861 + -0.6
2,851,896 + -0.3
2,852,383 + AO353_12880 0.45 -1.8
2,852,431 + AO353_12880 0.49 -3.5
2,852,431 + AO353_12880 0.49 +0.4

Or see this region's nucleotide sequence