Experiment: Paraquat dichloride 0.032 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09570 and AO353_09575 are separated by 80 nucleotides AO353_09575 and AO353_09580 are separated by 15 nucleotides
AO353_09570: AO353_09570 - type VI secretion protein ImpA, at 2,101,210 to 2,102,235
_09570
AO353_09575: AO353_09575 - hypothetical protein, at 2,102,316 to 2,102,825
_09575
AO353_09580: AO353_09580 - EvpB family type VI secretion protein, at 2,102,841 to 2,104,334
_09580
Position (kb)
2102
2103 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2101.344 kb on - strand, within AO353_09570 at 2101.410 kb on + strand, within AO353_09570 at 2101.410 kb on + strand, within AO353_09570 at 2101.411 kb on - strand, within AO353_09570 at 2101.411 kb on - strand, within AO353_09570 at 2101.422 kb on + strand, within AO353_09570 at 2101.422 kb on + strand, within AO353_09570 at 2101.505 kb on + strand, within AO353_09570 at 2101.505 kb on + strand, within AO353_09570 at 2101.506 kb on - strand, within AO353_09570 at 2101.517 kb on - strand, within AO353_09570 at 2101.517 kb on - strand, within AO353_09570 at 2101.517 kb on - strand, within AO353_09570 at 2101.517 kb on - strand, within AO353_09570 at 2101.650 kb on + strand, within AO353_09570 at 2101.650 kb on + strand at 2101.651 kb on - strand, within AO353_09570 at 2101.651 kb on - strand, within AO353_09570 at 2101.651 kb on - strand, within AO353_09570 at 2101.843 kb on + strand, within AO353_09570 at 2101.843 kb on + strand, within AO353_09570 at 2101.843 kb on + strand, within AO353_09570 at 2101.843 kb on + strand, within AO353_09570 at 2101.844 kb on - strand, within AO353_09570 at 2101.844 kb on - strand, within AO353_09570 at 2101.990 kb on + strand, within AO353_09570 at 2101.990 kb on + strand, within AO353_09570 at 2101.991 kb on - strand, within AO353_09570 at 2101.991 kb on - strand, within AO353_09570 at 2102.054 kb on + strand, within AO353_09570 at 2102.054 kb on + strand, within AO353_09570 at 2102.054 kb on + strand, within AO353_09570 at 2102.054 kb on + strand, within AO353_09570 at 2102.055 kb on - strand, within AO353_09570 at 2102.083 kb on + strand, within AO353_09570 at 2102.083 kb on + strand, within AO353_09570 at 2102.083 kb on + strand, within AO353_09570 at 2102.084 kb on - strand, within AO353_09570 at 2102.084 kb on - strand, within AO353_09570 at 2102.084 kb on - strand, within AO353_09570 at 2102.084 kb on - strand, within AO353_09570 at 2102.084 kb on - strand, within AO353_09570 at 2102.084 kb on - strand, within AO353_09570 at 2102.084 kb on - strand, within AO353_09570 at 2102.084 kb on - strand, within AO353_09570 at 2102.086 kb on + strand, within AO353_09570 at 2102.086 kb on + strand, within AO353_09570 at 2102.086 kb on + strand, within AO353_09570 at 2102.087 kb on - strand, within AO353_09570 at 2102.087 kb on - strand, within AO353_09570 at 2102.087 kb on - strand, within AO353_09570 at 2102.087 kb on - strand, within AO353_09570 at 2102.087 kb on - strand, within AO353_09570 at 2102.233 kb on + strand at 2102.233 kb on + strand at 2102.233 kb on + strand at 2102.234 kb on - strand at 2102.234 kb on - strand at 2102.234 kb on - strand at 2102.379 kb on + strand, within AO353_09575 at 2102.395 kb on - strand, within AO353_09575 at 2102.429 kb on - strand, within AO353_09575 at 2102.678 kb on - strand, within AO353_09575 at 2102.678 kb on - strand, within AO353_09575 at 2102.678 kb on - strand, within AO353_09575 at 2102.715 kb on + strand, within AO353_09575 at 2102.715 kb on + strand, within AO353_09575 at 2102.715 kb on + strand, within AO353_09575 at 2102.715 kb on + strand, within AO353_09575 at 2102.715 kb on + strand, within AO353_09575 at 2102.715 kb on + strand, within AO353_09575 at 2102.715 kb on + strand, within AO353_09575 at 2102.715 kb on + strand, within AO353_09575 at 2102.715 kb on + strand, within AO353_09575 at 2102.715 kb on + strand, within AO353_09575 at 2102.716 kb on - strand, within AO353_09575 at 2102.716 kb on - strand, within AO353_09575 at 2102.716 kb on - strand, within AO353_09575 at 2102.716 kb on - strand, within AO353_09575 at 2102.716 kb on - strand, within AO353_09575 at 2102.716 kb on - strand, within AO353_09575 at 2102.823 kb on + strand at 2102.823 kb on + strand at 2102.824 kb on - strand at 2102.824 kb on - strand at 2102.824 kb on - strand at 2102.854 kb on + strand at 2102.854 kb on + strand at 2102.855 kb on - strand at 2102.855 kb on - strand at 2103.144 kb on + strand, within AO353_09580 at 2103.144 kb on + strand, within AO353_09580 at 2103.144 kb on + strand, within AO353_09580 at 2103.145 kb on - strand, within AO353_09580 at 2103.145 kb on - strand, within AO353_09580 at 2103.145 kb on - strand, within AO353_09580 at 2103.279 kb on + strand, within AO353_09580 at 2103.279 kb on + strand, within AO353_09580 at 2103.279 kb on + strand, within AO353_09580 at 2103.279 kb on + strand, within AO353_09580 at 2103.279 kb on + strand, within AO353_09580 at 2103.279 kb on + strand, within AO353_09580 at 2103.279 kb on + strand, within AO353_09580 at 2103.279 kb on + strand, within AO353_09580 at 2103.279 kb on + strand, within AO353_09580 at 2103.280 kb on - strand, within AO353_09580 at 2103.280 kb on - strand, within AO353_09580 at 2103.280 kb on - strand, within AO353_09580 at 2103.280 kb on - strand, within AO353_09580 at 2103.280 kb on - strand, within AO353_09580 at 2103.280 kb on - strand, within AO353_09580 at 2103.280 kb on - strand, within AO353_09580 at 2103.291 kb on + strand, within AO353_09580 at 2103.291 kb on + strand, within AO353_09580 at 2103.315 kb on + strand, within AO353_09580 at 2103.316 kb on - strand, within AO353_09580 at 2103.316 kb on - strand, within AO353_09580 at 2103.336 kb on + strand, within AO353_09580 at 2103.336 kb on + strand, within AO353_09580 at 2103.337 kb on - strand, within AO353_09580 at 2103.337 kb on - strand, within AO353_09580 at 2103.337 kb on - strand, within AO353_09580 at 2103.339 kb on + strand, within AO353_09580 at 2103.339 kb on + strand, within AO353_09580 at 2103.339 kb on + strand, within AO353_09580 at 2103.340 kb on - strand, within AO353_09580 at 2103.340 kb on - strand, within AO353_09580 at 2103.340 kb on - strand, within AO353_09580 at 2103.340 kb on - strand, within AO353_09580 at 2103.340 kb on - strand, within AO353_09580 at 2103.510 kb on + strand, within AO353_09580 at 2103.552 kb on + strand, within AO353_09580 at 2103.553 kb on - strand, within AO353_09580 at 2103.666 kb on + strand, within AO353_09580 at 2103.666 kb on + strand, within AO353_09580 at 2103.666 kb on + strand, within AO353_09580 at 2103.666 kb on + strand, within AO353_09580 at 2103.666 kb on + strand, within AO353_09580 at 2103.666 kb on + strand, within AO353_09580 at 2103.667 kb on - strand, within AO353_09580 at 2103.667 kb on - strand, within AO353_09580 at 2103.667 kb on - strand, within AO353_09580 at 2103.667 kb on - strand, within AO353_09580 at 2103.667 kb on - strand, within AO353_09580 at 2103.667 kb on - strand, within AO353_09580 at 2103.667 kb on - strand, within AO353_09580 at 2103.667 kb on - strand, within AO353_09580 at 2103.817 kb on + strand, within AO353_09580 at 2103.817 kb on + strand, within AO353_09580 at 2103.817 kb on + strand, within AO353_09580 at 2103.817 kb on + strand, within AO353_09580 at 2103.818 kb on - strand, within AO353_09580 at 2103.818 kb on - strand, within AO353_09580
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/mL remove 2,101,344 - AO353_09570 0.13 +0.7 2,101,410 + AO353_09570 0.19 +0.5 2,101,410 + AO353_09570 0.19 +1.0 2,101,411 - AO353_09570 0.20 -0.6 2,101,411 - AO353_09570 0.20 -0.5 2,101,422 + AO353_09570 0.21 +1.1 2,101,422 + AO353_09570 0.21 -0.4 2,101,505 + AO353_09570 0.29 -0.8 2,101,505 + AO353_09570 0.29 +2.6 2,101,506 - AO353_09570 0.29 -0.3 2,101,517 - AO353_09570 0.30 -0.3 2,101,517 - AO353_09570 0.30 +0.6 2,101,517 - AO353_09570 0.30 +0.4 2,101,517 - AO353_09570 0.30 +0.9 2,101,650 + AO353_09570 0.43 -0.1 2,101,650 + +0.2 2,101,651 - AO353_09570 0.43 -0.9 2,101,651 - AO353_09570 0.43 +1.8 2,101,651 - AO353_09570 0.43 -1.9 2,101,843 + AO353_09570 0.62 +1.8 2,101,843 + AO353_09570 0.62 -0.1 2,101,843 + AO353_09570 0.62 -1.0 2,101,843 + AO353_09570 0.62 +0.3 2,101,844 - AO353_09570 0.62 +0.6 2,101,844 - AO353_09570 0.62 +0.1 2,101,990 + AO353_09570 0.76 +2.4 2,101,990 + AO353_09570 0.76 +0.0 2,101,991 - AO353_09570 0.76 -0.3 2,101,991 - AO353_09570 0.76 -0.5 2,102,054 + AO353_09570 0.82 -0.5 2,102,054 + AO353_09570 0.82 -2.1 2,102,054 + AO353_09570 0.82 +0.5 2,102,054 + AO353_09570 0.82 +1.4 2,102,055 - AO353_09570 0.82 -0.5 2,102,083 + AO353_09570 0.85 -0.3 2,102,083 + AO353_09570 0.85 -0.9 2,102,083 + AO353_09570 0.85 +0.9 2,102,084 - AO353_09570 0.85 +1.0 2,102,084 - AO353_09570 0.85 -0.1 2,102,084 - AO353_09570 0.85 -0.4 2,102,084 - AO353_09570 0.85 -0.8 2,102,084 - AO353_09570 0.85 -0.2 2,102,084 - AO353_09570 0.85 +1.0 2,102,084 - AO353_09570 0.85 +0.8 2,102,084 - AO353_09570 0.85 -0.8 2,102,086 + AO353_09570 0.85 -0.4 2,102,086 + AO353_09570 0.85 -1.3 2,102,086 + AO353_09570 0.85 +0.9 2,102,087 - AO353_09570 0.85 +0.0 2,102,087 - AO353_09570 0.85 -0.9 2,102,087 - AO353_09570 0.85 -0.1 2,102,087 - AO353_09570 0.85 +0.8 2,102,087 - AO353_09570 0.85 +0.6 2,102,233 + -1.0 2,102,233 + -0.2 2,102,233 + +0.9 2,102,234 - -0.3 2,102,234 - +0.6 2,102,234 - -0.6 2,102,379 + AO353_09575 0.12 +0.3 2,102,395 - AO353_09575 0.15 -1.0 2,102,429 - AO353_09575 0.22 -0.4 2,102,678 - AO353_09575 0.71 +0.7 2,102,678 - AO353_09575 0.71 -0.3 2,102,678 - AO353_09575 0.71 +0.4 2,102,715 + AO353_09575 0.78 +1.4 2,102,715 + AO353_09575 0.78 -1.4 2,102,715 + AO353_09575 0.78 +1.4 2,102,715 + AO353_09575 0.78 +1.4 2,102,715 + AO353_09575 0.78 -1.3 2,102,715 + AO353_09575 0.78 -0.4 2,102,715 + AO353_09575 0.78 +0.4 2,102,715 + AO353_09575 0.78 -0.7 2,102,715 + AO353_09575 0.78 +0.5 2,102,715 + AO353_09575 0.78 -0.2 2,102,716 - AO353_09575 0.78 +1.4 2,102,716 - AO353_09575 0.78 -0.0 2,102,716 - AO353_09575 0.78 -0.5 2,102,716 - AO353_09575 0.78 +0.6 2,102,716 - AO353_09575 0.78 -0.8 2,102,716 - AO353_09575 0.78 -2.4 2,102,823 + -1.3 2,102,823 + -0.5 2,102,824 - -0.4 2,102,824 - -0.3 2,102,824 - -2.0 2,102,854 + +1.0 2,102,854 + +1.0 2,102,855 - -0.4 2,102,855 - -1.4 2,103,144 + AO353_09580 0.20 +0.4 2,103,144 + AO353_09580 0.20 +1.2 2,103,144 + AO353_09580 0.20 +0.9 2,103,145 - AO353_09580 0.20 +1.1 2,103,145 - AO353_09580 0.20 -1.0 2,103,145 - AO353_09580 0.20 +0.4 2,103,279 + AO353_09580 0.29 -0.1 2,103,279 + AO353_09580 0.29 -0.6 2,103,279 + AO353_09580 0.29 -1.1 2,103,279 + AO353_09580 0.29 -0.7 2,103,279 + AO353_09580 0.29 -1.3 2,103,279 + AO353_09580 0.29 -0.4 2,103,279 + AO353_09580 0.29 -1.3 2,103,279 + AO353_09580 0.29 -1.0 2,103,279 + AO353_09580 0.29 -1.1 2,103,280 - AO353_09580 0.29 -0.1 2,103,280 - AO353_09580 0.29 -0.6 2,103,280 - AO353_09580 0.29 -1.0 2,103,280 - AO353_09580 0.29 -0.1 2,103,280 - AO353_09580 0.29 +0.6 2,103,280 - AO353_09580 0.29 -0.7 2,103,280 - AO353_09580 0.29 -0.3 2,103,291 + AO353_09580 0.30 -0.4 2,103,291 + AO353_09580 0.30 -0.3 2,103,315 + AO353_09580 0.32 +0.0 2,103,316 - AO353_09580 0.32 -0.0 2,103,316 - AO353_09580 0.32 -1.1 2,103,336 + AO353_09580 0.33 +2.4 2,103,336 + AO353_09580 0.33 +1.3 2,103,337 - AO353_09580 0.33 +0.7 2,103,337 - AO353_09580 0.33 +0.0 2,103,337 - AO353_09580 0.33 -0.1 2,103,339 + AO353_09580 0.33 -1.0 2,103,339 + AO353_09580 0.33 -0.2 2,103,339 + AO353_09580 0.33 -0.3 2,103,340 - AO353_09580 0.33 -0.1 2,103,340 - AO353_09580 0.33 -1.6 2,103,340 - AO353_09580 0.33 +0.4 2,103,340 - AO353_09580 0.33 +0.9 2,103,340 - AO353_09580 0.33 +1.1 2,103,510 + AO353_09580 0.45 -0.9 2,103,552 + AO353_09580 0.48 -1.5 2,103,553 - AO353_09580 0.48 +0.8 2,103,666 + AO353_09580 0.55 -1.0 2,103,666 + AO353_09580 0.55 -0.2 2,103,666 + AO353_09580 0.55 +0.6 2,103,666 + AO353_09580 0.55 +0.1 2,103,666 + AO353_09580 0.55 -1.6 2,103,666 + AO353_09580 0.55 +0.0 2,103,667 - AO353_09580 0.55 -1.0 2,103,667 - AO353_09580 0.55 -0.2 2,103,667 - AO353_09580 0.55 -0.9 2,103,667 - AO353_09580 0.55 +0.6 2,103,667 - AO353_09580 0.55 -2.8 2,103,667 - AO353_09580 0.55 +0.4 2,103,667 - AO353_09580 0.55 +0.3 2,103,667 - AO353_09580 0.55 -1.1 2,103,817 + AO353_09580 0.65 +0.5 2,103,817 + AO353_09580 0.65 -0.0 2,103,817 + AO353_09580 0.65 -0.1 2,103,817 + AO353_09580 0.65 -1.0 2,103,818 - AO353_09580 0.65 -0.1 2,103,818 - AO353_09580 0.65 -0.2
Or see this region's nucleotide sequence