Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04460

Experiment: Paraquat dichloride 0.032 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04455 and AO353_04460 are separated by 24 nucleotidesAO353_04460 and AO353_04465 are separated by 28 nucleotides AO353_04455: AO353_04455 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data), at 957,107 to 958,117 _04455 AO353_04460: AO353_04460 - N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) (from data), at 958,142 to 960,658 _04460 AO353_04465: AO353_04465 - N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data), at 960,687 to 962,402 _04465 Position (kb) 958 959 960 961Strain fitness (log2 ratio) -2 -1 0 1 2at 957.260 kb on + strand, within AO353_04455at 957.260 kb on + strand, within AO353_04455at 957.260 kb on + strand, within AO353_04455at 957.260 kb on + strand, within AO353_04455at 957.260 kb on + strand, within AO353_04455at 957.260 kb on + strand, within AO353_04455at 957.261 kb on - strand, within AO353_04455at 957.261 kb on - strandat 957.261 kb on - strand, within AO353_04455at 957.270 kb on - strand, within AO353_04455at 957.292 kb on + strand, within AO353_04455at 957.292 kb on + strand, within AO353_04455at 957.293 kb on - strand, within AO353_04455at 957.684 kb on + strand, within AO353_04455at 957.684 kb on + strand, within AO353_04455at 957.684 kb on + strand, within AO353_04455at 957.684 kb on + strand, within AO353_04455at 957.685 kb on - strand, within AO353_04455at 957.685 kb on - strand, within AO353_04455at 957.841 kb on + strand, within AO353_04455at 957.841 kb on + strand, within AO353_04455at 957.842 kb on - strand, within AO353_04455at 957.845 kb on + strand, within AO353_04455at 957.845 kb on + strand, within AO353_04455at 957.845 kb on + strand, within AO353_04455at 957.845 kb on + strand, within AO353_04455at 957.846 kb on - strand, within AO353_04455at 957.846 kb on - strand, within AO353_04455at 957.933 kb on + strand, within AO353_04455at 957.934 kb on - strand, within AO353_04455at 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.031 kb on + strandat 958.032 kb on - strandat 958.032 kb on - strandat 958.032 kb on - strandat 958.032 kb on - strandat 958.032 kb on - strandat 958.147 kb on + strandat 958.147 kb on + strandat 958.147 kb on + strandat 958.147 kb on + strandat 958.147 kb on + strandat 958.147 kb on + strandat 958.147 kb on + strandat 958.147 kb on + strandat 958.148 kb on - strandat 958.148 kb on - strandat 958.148 kb on - strandat 958.157 kb on - strandat 958.157 kb on - strandat 958.157 kb on - strandat 958.498 kb on + strand, within AO353_04460at 958.498 kb on + strand, within AO353_04460at 958.498 kb on + strand, within AO353_04460at 958.498 kb on + strand, within AO353_04460at 958.498 kb on + strand, within AO353_04460at 958.498 kb on + strand, within AO353_04460at 958.498 kb on + strand, within AO353_04460at 958.499 kb on - strand, within AO353_04460at 958.499 kb on - strand, within AO353_04460at 958.499 kb on - strand, within AO353_04460at 958.951 kb on + strand, within AO353_04460at 959.065 kb on + strand, within AO353_04460at 959.301 kb on + strand, within AO353_04460at 959.301 kb on + strand, within AO353_04460at 959.301 kb on + strand, within AO353_04460at 959.301 kb on + strand, within AO353_04460at 959.301 kb on + strand, within AO353_04460at 959.302 kb on - strand, within AO353_04460at 959.302 kb on - strand, within AO353_04460at 959.302 kb on - strand, within AO353_04460at 959.370 kb on + strand, within AO353_04460at 959.402 kb on + strandat 959.402 kb on + strand, within AO353_04460at 959.409 kb on + strand, within AO353_04460at 959.409 kb on + strand, within AO353_04460at 959.409 kb on + strand, within AO353_04460at 959.442 kb on + strand, within AO353_04460at 959.523 kb on + strand, within AO353_04460at 959.523 kb on + strand, within AO353_04460at 959.523 kb on + strand, within AO353_04460at 960.048 kb on + strand, within AO353_04460at 960.048 kb on + strand, within AO353_04460at 960.049 kb on - strand, within AO353_04460at 960.049 kb on - strand, within AO353_04460at 960.155 kb on + strand, within AO353_04460at 960.155 kb on + strand, within AO353_04460at 960.155 kb on + strand, within AO353_04460at 960.156 kb on - strand, within AO353_04460at 960.156 kb on - strand, within AO353_04460at 960.156 kb on - strand, within AO353_04460at 960.156 kb on - strand, within AO353_04460at 960.314 kb on + strand, within AO353_04460at 960.314 kb on + strand, within AO353_04460at 960.314 kb on + strand, within AO353_04460at 960.315 kb on - strand, within AO353_04460at 960.315 kb on - strand, within AO353_04460at 960.656 kb on + strandat 960.657 kb on - strandat 960.681 kb on + strandat 960.681 kb on + strandat 960.682 kb on - strandat 960.682 kb on - strandat 960.682 kb on - strandat 960.682 kb on - strandat 960.682 kb on - strandat 960.682 kb on - strandat 960.682 kb on - strandat 960.682 kb on - strandat 960.690 kb on + strandat 960.690 kb on + strandat 960.690 kb on + strandat 960.690 kb on + strandat 960.690 kb on + strandat 960.690 kb on + strandat 960.690 kb on + strandat 960.690 kb on + strandat 960.690 kb on + strandat 960.690 kb on + strandat 960.691 kb on - strandat 960.691 kb on - strandat 960.691 kb on - strandat 960.691 kb on - strandat 960.691 kb on - strandat 960.691 kb on - strandat 960.691 kb on - strandat 960.691 kb on - strandat 960.691 kb on - strandat 960.691 kb on - strandat 960.691 kb on - strandat 960.691 kb on - strandat 960.930 kb on + strand, within AO353_04465at 961.026 kb on + strand, within AO353_04465at 961.026 kb on + strand, within AO353_04465at 961.026 kb on + strand, within AO353_04465at 961.026 kb on + strand, within AO353_04465at 961.027 kb on - strand, within AO353_04465at 961.027 kb on - strand, within AO353_04465at 961.027 kb on - strand, within AO353_04465at 961.059 kb on + strand, within AO353_04465at 961.059 kb on + strand, within AO353_04465at 961.059 kb on + strand, within AO353_04465at 961.060 kb on - strand, within AO353_04465at 961.350 kb on + strand, within AO353_04465at 961.350 kb on + strand, within AO353_04465at 961.350 kb on + strand, within AO353_04465at 961.351 kb on - strand, within AO353_04465at 961.351 kb on - strand, within AO353_04465at 961.351 kb on - strand, within AO353_04465at 961.351 kb on - strand, within AO353_04465at 961.440 kb on + strand, within AO353_04465at 961.440 kb on + strand, within AO353_04465at 961.441 kb on - strand, within AO353_04465at 961.569 kb on + strand, within AO353_04465at 961.569 kb on + strand, within AO353_04465at 961.569 kb on + strand, within AO353_04465at 961.569 kb on + strand, within AO353_04465at 961.569 kb on + strand, within AO353_04465at 961.569 kb on + strand, within AO353_04465at 961.569 kb on + strand, within AO353_04465at 961.569 kb on + strand, within AO353_04465at 961.569 kb on + strand, within AO353_04465at 961.569 kb on + strand, within AO353_04465at 961.569 kb on + strand, within AO353_04465at 961.570 kb on - strand, within AO353_04465at 961.570 kb on - strand, within AO353_04465at 961.570 kb on - strand, within AO353_04465at 961.570 kb on - strand, within AO353_04465at 961.570 kb on - strand, within AO353_04465at 961.570 kb on - strand, within AO353_04465at 961.573 kb on + strand, within AO353_04465at 961.573 kb on + strand, within AO353_04465at 961.573 kb on + strand, within AO353_04465at 961.573 kb on + strand, within AO353_04465at 961.573 kb on + strand, within AO353_04465at 961.574 kb on - strand, within AO353_04465at 961.574 kb on - strand, within AO353_04465at 961.574 kb on - strand, within AO353_04465at 961.574 kb on - strand, within AO353_04465at 961.574 kb on - strand, within AO353_04465at 961.574 kb on - strand, within AO353_04465at 961.574 kb on - strand, within AO353_04465at 961.574 kb on - strand, within AO353_04465at 961.574 kb on - strand, within AO353_04465

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/mL
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957,260 + AO353_04455 0.15 +1.2
957,260 + AO353_04455 0.15 +2.4
957,260 + AO353_04455 0.15 -0.7
957,260 + AO353_04455 0.15 -0.0
957,260 + AO353_04455 0.15 -1.5
957,260 + AO353_04455 0.15 +2.3
957,261 - AO353_04455 0.15 -2.2
957,261 - +0.3
957,261 - AO353_04455 0.15 +0.6
957,270 - AO353_04455 0.16 -0.6
957,292 + AO353_04455 0.18 -0.1
957,292 + AO353_04455 0.18 -2.1
957,293 - AO353_04455 0.18 -0.2
957,684 + AO353_04455 0.57 -1.3
957,684 + AO353_04455 0.57 -0.5
957,684 + AO353_04455 0.57 +0.3
957,684 + AO353_04455 0.57 -1.0
957,685 - AO353_04455 0.57 +0.4
957,685 - AO353_04455 0.57 +2.4
957,841 + AO353_04455 0.73 -0.6
957,841 + AO353_04455 0.73 +1.0
957,842 - AO353_04455 0.73 +0.6
957,845 + AO353_04455 0.73 -0.1
957,845 + AO353_04455 0.73 +1.0
957,845 + AO353_04455 0.73 -0.3
957,845 + AO353_04455 0.73 -0.7
957,846 - AO353_04455 0.73 -0.7
957,846 - AO353_04455 0.73 -2.2
957,933 + AO353_04455 0.82 +0.0
957,934 - AO353_04455 0.82 +1.4
958,031 + +0.9
958,031 + +0.1
958,031 + -0.4
958,031 + -1.8
958,031 + +0.3
958,031 + +1.7
958,031 + -0.8
958,031 + -1.0
958,031 + -0.1
958,031 + -0.0
958,031 + -0.0
958,031 + -1.0
958,031 + +0.0
958,032 - +1.5
958,032 - +0.9
958,032 - -1.6
958,032 - -0.8
958,032 - +0.1
958,147 + +0.9
958,147 + +0.0
958,147 + +1.7
958,147 + +0.3
958,147 + -1.1
958,147 + -0.1
958,147 + +0.3
958,147 + +0.9
958,148 - -1.1
958,148 - +1.3
958,148 - +0.0
958,157 - -1.0
958,157 - +0.1
958,157 - +0.3
958,498 + AO353_04460 0.14 +0.6
958,498 + AO353_04460 0.14 -0.7
958,498 + AO353_04460 0.14 +0.6
958,498 + AO353_04460 0.14 +0.0
958,498 + AO353_04460 0.14 +1.3
958,498 + AO353_04460 0.14 -1.1
958,498 + AO353_04460 0.14 +1.1
958,499 - AO353_04460 0.14 +0.3
958,499 - AO353_04460 0.14 -2.7
958,499 - AO353_04460 0.14 +0.6
958,951 + AO353_04460 0.32 -0.3
959,065 + AO353_04460 0.37 +0.2
959,301 + AO353_04460 0.46 +0.2
959,301 + AO353_04460 0.46 +0.0
959,301 + AO353_04460 0.46 +1.2
959,301 + AO353_04460 0.46 +1.4
959,301 + AO353_04460 0.46 -0.6
959,302 - AO353_04460 0.46 +0.9
959,302 - AO353_04460 0.46 -1.0
959,302 - AO353_04460 0.46 -0.3
959,370 + AO353_04460 0.49 +0.8
959,402 + +1.3
959,402 + AO353_04460 0.50 +1.5
959,409 + AO353_04460 0.50 -0.3
959,409 + AO353_04460 0.50 +0.7
959,409 + AO353_04460 0.50 -0.1
959,442 + AO353_04460 0.52 -1.0
959,523 + AO353_04460 0.55 -0.0
959,523 + AO353_04460 0.55 -0.2
959,523 + AO353_04460 0.55 -0.5
960,048 + AO353_04460 0.76 -0.1
960,048 + AO353_04460 0.76 +0.5
960,049 - AO353_04460 0.76 +1.4
960,049 - AO353_04460 0.76 -2.1
960,155 + AO353_04460 0.80 -0.6
960,155 + AO353_04460 0.80 +1.0
960,155 + AO353_04460 0.80 +0.7
960,156 - AO353_04460 0.80 +0.3
960,156 - AO353_04460 0.80 +0.0
960,156 - AO353_04460 0.80 +1.4
960,156 - AO353_04460 0.80 +2.0
960,314 + AO353_04460 0.86 +0.8
960,314 + AO353_04460 0.86 -1.3
960,314 + AO353_04460 0.86 -0.6
960,315 - AO353_04460 0.86 +1.2
960,315 - AO353_04460 0.86 +0.5
960,656 + -0.3
960,657 - +1.1
960,681 + +0.6
960,681 + +0.2
960,682 - -0.9
960,682 - +0.4
960,682 - +0.4
960,682 - -0.4
960,682 - +0.3
960,682 - +0.0
960,682 - -0.0
960,682 - -0.3
960,690 + +0.7
960,690 + +0.0
960,690 + +0.2
960,690 + -0.6
960,690 + +1.5
960,690 + +0.5
960,690 + -0.7
960,690 + -0.8
960,690 + -0.7
960,690 + -0.7
960,691 - -0.3
960,691 - -1.8
960,691 - +0.2
960,691 - +1.9
960,691 - +0.5
960,691 - +0.0
960,691 - -0.3
960,691 - +1.1
960,691 - +0.3
960,691 - -0.1
960,691 - -1.2
960,691 - +1.5
960,930 + AO353_04465 0.14 -1.7
961,026 + AO353_04465 0.20 +0.7
961,026 + AO353_04465 0.20 +0.8
961,026 + AO353_04465 0.20 -1.7
961,026 + AO353_04465 0.20 -1.9
961,027 - AO353_04465 0.20 -0.3
961,027 - AO353_04465 0.20 -1.1
961,027 - AO353_04465 0.20 -0.5
961,059 + AO353_04465 0.22 -0.4
961,059 + AO353_04465 0.22 -1.2
961,059 + AO353_04465 0.22 -1.3
961,060 - AO353_04465 0.22 -0.5
961,350 + AO353_04465 0.39 +0.9
961,350 + AO353_04465 0.39 +0.0
961,350 + AO353_04465 0.39 +0.0
961,351 - AO353_04465 0.39 +0.5
961,351 - AO353_04465 0.39 -0.6
961,351 - AO353_04465 0.39 -0.7
961,351 - AO353_04465 0.39 +0.9
961,440 + AO353_04465 0.44 +0.5
961,440 + AO353_04465 0.44 +1.6
961,441 - AO353_04465 0.44 -0.6
961,569 + AO353_04465 0.51 +0.3
961,569 + AO353_04465 0.51 +0.7
961,569 + AO353_04465 0.51 -1.8
961,569 + AO353_04465 0.51 -0.2
961,569 + AO353_04465 0.51 -1.0
961,569 + AO353_04465 0.51 +0.9
961,569 + AO353_04465 0.51 -0.3
961,569 + AO353_04465 0.51 -0.5
961,569 + AO353_04465 0.51 +1.0
961,569 + AO353_04465 0.51 -0.1
961,569 + AO353_04465 0.51 +0.7
961,570 - AO353_04465 0.51 +1.0
961,570 - AO353_04465 0.51 +1.1
961,570 - AO353_04465 0.51 -0.4
961,570 - AO353_04465 0.51 +0.7
961,570 - AO353_04465 0.51 -0.6
961,570 - AO353_04465 0.51 -0.6
961,573 + AO353_04465 0.52 -0.6
961,573 + AO353_04465 0.52 -2.0
961,573 + AO353_04465 0.52 +0.3
961,573 + AO353_04465 0.52 -1.4
961,573 + AO353_04465 0.52 -1.3
961,574 - AO353_04465 0.52 +0.3
961,574 - AO353_04465 0.52 +1.0
961,574 - AO353_04465 0.52 -0.1
961,574 - AO353_04465 0.52 -1.1
961,574 - AO353_04465 0.52 +0.3
961,574 - AO353_04465 0.52 -0.1
961,574 - AO353_04465 0.52 -1.1
961,574 - AO353_04465 0.52 -0.3
961,574 - AO353_04465 0.52 -1.6

Or see this region's nucleotide sequence