Experiment: Paraquat dichloride 0.032 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03510 and AO353_03515 are separated by 401 nucleotides AO353_03515 and AO353_03520 are separated by 96 nucleotides
AO353_03510: AO353_03510 - glycine cleavage system protein T, at 752,692 to 753,816
_03510
AO353_03515: AO353_03515 - cold-shock protein, at 754,218 to 754,430
_03515
AO353_03520: AO353_03520 - hypothetical protein, at 754,527 to 755,015
_03520
Position (kb)
754
755 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 753.410 kb on - strand, within AO353_03510 at 753.472 kb on - strand, within AO353_03510 at 753.472 kb on - strand, within AO353_03510 at 753.527 kb on + strand, within AO353_03510 at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.712 kb on + strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.713 kb on - strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.746 kb on + strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.747 kb on - strand at 753.773 kb on + strand at 753.774 kb on - strand at 753.802 kb on + strand at 753.802 kb on + strand at 753.803 kb on - strand at 753.803 kb on - strand at 753.803 kb on - strand at 753.803 kb on - strand at 753.803 kb on - strand at 753.828 kb on + strand at 753.828 kb on + strand at 753.829 kb on - strand at 753.829 kb on - strand at 753.830 kb on + strand at 753.830 kb on + strand at 753.831 kb on - strand at 753.831 kb on - strand at 753.831 kb on - strand at 753.835 kb on - strand at 753.858 kb on + strand at 753.859 kb on - strand at 753.891 kb on + strand at 753.891 kb on + strand at 753.926 kb on + strand at 753.926 kb on + strand at 753.926 kb on + strand at 753.929 kb on - strand at 753.955 kb on + strand at 754.041 kb on + strand at 754.051 kb on - strand at 754.103 kb on + strand at 754.108 kb on + strand at 754.108 kb on + strand at 754.109 kb on - strand at 754.109 kb on - strand at 754.109 kb on - strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.115 kb on + strand at 754.116 kb on - strand at 754.116 kb on - strand at 754.119 kb on + strand at 754.119 kb on + strand at 754.119 kb on + strand at 754.119 kb on + strand at 754.120 kb on - strand at 754.120 kb on - strand at 754.120 kb on - strand at 754.120 kb on - strand at 754.120 kb on - strand at 754.140 kb on + strand at 754.140 kb on + strand at 754.140 kb on + strand at 754.140 kb on + strand at 754.140 kb on + strand at 754.141 kb on - strand at 754.141 kb on - strand at 754.164 kb on - strand at 754.164 kb on - strand at 754.212 kb on + strand at 754.253 kb on + strand, within AO353_03515 at 754.277 kb on + strand, within AO353_03515 at 754.278 kb on - strand, within AO353_03515 at 754.331 kb on + strand, within AO353_03515 at 754.414 kb on + strand at 754.415 kb on - strand at 754.602 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.650 kb on + strand, within AO353_03520 at 754.651 kb on - strand, within AO353_03520 at 754.651 kb on - strand, within AO353_03520 at 754.971 kb on + strand at 754.971 kb on + strand at 754.972 kb on - strand at 754.972 kb on - strand at 755.272 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/mL remove 753,410 - AO353_03510 0.64 -0.7 753,472 - AO353_03510 0.69 -2.5 753,472 - AO353_03510 0.69 -2.0 753,527 + AO353_03510 0.74 +0.1 753,712 + -0.1 753,712 + -0.3 753,712 + +0.8 753,712 + +0.2 753,712 + -0.2 753,712 + +0.4 753,712 + -0.4 753,712 + +0.6 753,712 + -0.5 753,712 + +0.7 753,712 + +1.6 753,712 + -1.5 753,712 + -0.9 753,712 + -0.4 753,712 + -0.8 753,713 - -0.5 753,713 - -2.6 753,713 - +0.3 753,713 - +0.3 753,713 - -1.6 753,713 - -2.3 753,713 - -0.1 753,713 - -0.2 753,713 - -1.8 753,746 + +0.8 753,746 + -1.4 753,746 + +1.1 753,746 + +1.2 753,746 + -0.2 753,746 + -1.1 753,747 - +0.2 753,747 - +1.2 753,747 - +1.1 753,747 - +0.2 753,747 - -1.5 753,747 - +0.2 753,747 - -0.3 753,747 - -0.2 753,773 + +0.5 753,774 - +1.1 753,802 + +0.4 753,802 + -0.3 753,803 - -0.7 753,803 - -0.9 753,803 - +0.5 753,803 - -1.0 753,803 - +2.5 753,828 + +0.2 753,828 + -0.5 753,829 - +1.0 753,829 - -0.4 753,830 + -0.1 753,830 + -0.7 753,831 - -1.2 753,831 - -1.4 753,831 - +0.2 753,835 - -0.5 753,858 + -0.5 753,859 - -0.1 753,891 + -0.0 753,891 + +0.8 753,926 + +0.5 753,926 + -1.1 753,926 + +0.3 753,929 - +0.1 753,955 + -0.3 754,041 + -0.4 754,051 - -0.2 754,103 + -0.7 754,108 + +0.1 754,108 + -2.0 754,109 - -1.4 754,109 - -0.8 754,109 - -0.1 754,115 + -1.6 754,115 + -0.3 754,115 + +0.5 754,115 + -2.4 754,115 + +1.8 754,115 + +1.5 754,116 - +0.2 754,116 - +0.2 754,119 + -0.1 754,119 + -1.3 754,119 + -0.3 754,119 + -0.2 754,120 - -1.7 754,120 - -0.8 754,120 - -1.5 754,120 - -0.6 754,120 - -1.0 754,140 + -1.0 754,140 + +0.4 754,140 + +0.5 754,140 + -0.5 754,140 + -1.3 754,141 - -1.9 754,141 - -1.7 754,164 - +0.2 754,164 - -0.2 754,212 + -0.3 754,253 + AO353_03515 0.16 -1.1 754,277 + AO353_03515 0.28 -0.2 754,278 - AO353_03515 0.28 -1.1 754,331 + AO353_03515 0.53 -0.9 754,414 + -2.7 754,415 - -1.8 754,602 + AO353_03520 0.15 -0.6 754,650 + AO353_03520 0.25 -1.5 754,650 + AO353_03520 0.25 -0.8 754,650 + AO353_03520 0.25 +0.5 754,650 + AO353_03520 0.25 +0.2 754,650 + AO353_03520 0.25 +0.5 754,651 - AO353_03520 0.25 -0.4 754,651 - AO353_03520 0.25 +0.3 754,971 + -1.2 754,971 + -0.3 754,972 - -0.5 754,972 - +1.5 755,272 + +1.0
Or see this region's nucleotide sequence