Experiment: Paraquat dichloride 0.032 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01620 and AO353_01625 are separated by 59 nucleotides AO353_01625 and AO353_01630 are separated by 2 nucleotides AO353_01630 and AO353_01635 are separated by 104 nucleotides AO353_01635 and AO353_01640 are separated by 2 nucleotides AO353_01640 and AO353_01645 are separated by 370 nucleotides AO353_01645 and AO353_01650 are separated by 159 nucleotides
AO353_01620: AO353_01620 - AraC family transcriptional regulator, at 343,415 to 344,281
_01620
AO353_01625: AO353_01625 - tRNA-Gly, at 344,341 to 344,416
_01625
AO353_01630: AO353_01630 - tRNA-Glu, at 344,419 to 344,494
_01630
AO353_01635: AO353_01635 - tRNA-Gly, at 344,599 to 344,674
_01635
AO353_01640: AO353_01640 - tRNA-Glu, at 344,677 to 344,752
_01640
AO353_01645: AO353_01645 - hypothetical protein, at 345,123 to 345,881
_01645
AO353_01650: AO353_01650 - chemotaxis protein, at 346,041 to 348,008
_01650
Position (kb) 345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 344.132 kb on + strand, within AO353_01620 at 344.132 kb on + strand, within AO353_01620 at 344.132 kb on + strand, within AO353_01620 at 344.133 kb on - strand, within AO353_01620 at 344.204 kb on - strand at 344.204 kb on - strand at 344.254 kb on + strand at 344.284 kb on + strand at 344.285 kb on - strand at 344.285 kb on - strand at 344.290 kb on + strand at 344.290 kb on + strand at 344.290 kb on + strand at 344.290 kb on + strand at 344.290 kb on + strand at 344.291 kb on - strand at 344.340 kb on - strand at 344.340 kb on - strand at 344.340 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.804 kb on - strand at 344.820 kb on - strand at 344.820 kb on - strand at 344.852 kb on + strand at 344.860 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.932 kb on - strand at 344.932 kb on - strand at 344.932 kb on - strand at 344.932 kb on - strand at 344.932 kb on - strand at 344.933 kb on + strand at 344.933 kb on + strand at 344.933 kb on + strand at 344.934 kb on - strand at 344.934 kb on - strand at 344.934 kb on - strand at 344.934 kb on - strand at 344.934 kb on - strand at 344.956 kb on + strand at 344.957 kb on - strand at 344.957 kb on - strand at 344.957 kb on - strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.959 kb on - strand at 344.959 kb on - strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.009 kb on + strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.051 kb on + strand at 345.052 kb on - strand at 345.052 kb on - strand at 345.068 kb on - strand at 345.068 kb on - strand at 345.074 kb on + strand at 345.074 kb on + strand at 345.074 kb on + strand at 345.075 kb on - strand at 345.075 kb on - strand at 345.075 kb on - strand at 345.093 kb on + strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.095 kb on + strand at 345.096 kb on - strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.142 kb on + strand at 345.142 kb on + strand at 345.143 kb on - strand at 345.143 kb on - strand at 345.157 kb on + strand at 345.157 kb on + strand at 345.158 kb on - strand at 345.174 kb on + strand at 345.174 kb on + strand at 345.174 kb on + strand at 345.175 kb on - strand at 345.200 kb on + strand, within AO353_01645 at 345.200 kb on + strand, within AO353_01645 at 345.201 kb on - strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.592 kb on + strand, within AO353_01645 at 345.593 kb on - strand, within AO353_01645 at 345.690 kb on + strand, within AO353_01645 at 345.690 kb on + strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.720 kb on + strand, within AO353_01645 at 345.721 kb on - strand, within AO353_01645 at 345.738 kb on + strand, within AO353_01645 at 345.739 kb on - strand, within AO353_01645 at 345.809 kb on + strand at 345.869 kb on + strand at 345.870 kb on - strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.874 kb on - strand at 345.874 kb on - strand at 345.874 kb on - strand at 345.883 kb on - strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.950 kb on - strand at 345.950 kb on - strand at 345.969 kb on + strand at 345.969 kb on + strand at 345.977 kb on + strand at 345.977 kb on + strand at 345.978 kb on - strand at 345.978 kb on - strand at 345.978 kb on - strand at 345.978 kb on - strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.262 kb on + strand, within AO353_01650 at 346.332 kb on + strand, within AO353_01650 at 346.332 kb on + strand, within AO353_01650 at 346.332 kb on + strand, within AO353_01650 at 346.333 kb on - strand, within AO353_01650 at 346.333 kb on - strand, within AO353_01650 at 346.333 kb on - strand, within AO353_01650 at 346.637 kb on + strand, within AO353_01650 at 346.637 kb on + strand, within AO353_01650 at 346.638 kb on - strand, within AO353_01650 at 346.638 kb on - strand, within AO353_01650
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/mL remove 344,132 + AO353_01620 0.83 -0.8 344,132 + AO353_01620 0.83 -0.6 344,132 + AO353_01620 0.83 -1.8 344,133 - AO353_01620 0.83 -1.0 344,204 - +0.3 344,204 - +0.1 344,254 + +0.2 344,284 + +0.5 344,285 - +3.7 344,285 - +2.1 344,290 + -0.7 344,290 + +0.6 344,290 + -0.3 344,290 + +1.1 344,290 + +1.1 344,291 - +1.6 344,340 - +0.5 344,340 - +0.5 344,340 - -0.1 344,759 - +0.5 344,759 - -1.2 344,759 - -0.8 344,759 - -0.9 344,759 - -0.1 344,759 - -0.6 344,759 - -2.6 344,759 - -0.4 344,759 - -0.7 344,759 - -1.1 344,759 - -2.0 344,759 - -1.6 344,804 - -0.5 344,820 - +1.7 344,820 - -1.9 344,852 + -2.8 344,860 + +0.7 344,931 + +0.8 344,931 + -0.6 344,931 + -0.1 344,931 + +0.7 344,931 + -0.6 344,931 + -0.1 344,931 + -0.4 344,931 + +1.0 344,932 - -1.2 344,932 - +0.7 344,932 - +0.0 344,932 - +0.6 344,932 - +0.0 344,933 + +1.5 344,933 + +1.9 344,933 + -0.7 344,934 - +1.1 344,934 - -1.2 344,934 - -2.1 344,934 - -1.1 344,934 - +0.6 344,956 + +0.2 344,957 - -0.2 344,957 - -1.1 344,957 - -2.8 344,958 + +0.6 344,958 + -0.6 344,958 + -0.2 344,958 + -1.4 344,958 + -1.5 344,958 + +0.5 344,958 + +1.3 344,959 - +1.1 344,959 - +0.5 345,007 + -0.2 345,007 + +0.6 345,007 + +0.8 345,007 + -1.8 345,007 + -2.3 345,007 + +0.7 345,007 + +0.7 345,007 + +0.5 345,007 + -0.5 345,008 - -0.0 345,008 - +0.5 345,008 - -0.9 345,008 - +1.5 345,008 - -0.7 345,008 - -0.5 345,008 - -0.5 345,008 - -0.6 345,008 - -0.8 345,008 - -0.3 345,008 - +2.2 345,008 - +0.7 345,009 + -2.4 345,010 - +1.7 345,010 - -0.2 345,010 - -1.9 345,010 - +0.5 345,010 - +1.4 345,010 - -0.5 345,011 + -0.5 345,011 + +1.2 345,011 + +2.0 345,011 + +0.9 345,011 + +0.4 345,011 + -0.9 345,011 + -1.7 345,011 + +0.0 345,011 + +1.6 345,012 - +1.2 345,012 - -1.3 345,012 - +0.2 345,012 - -0.9 345,012 - -0.1 345,012 - +1.4 345,012 - -0.1 345,012 - +0.5 345,012 - -0.6 345,012 - -0.4 345,012 - +1.5 345,051 + +0.9 345,052 - +0.6 345,052 - +0.4 345,068 - +0.5 345,068 - +2.7 345,074 + +1.8 345,074 + -0.0 345,074 + +0.7 345,075 - -0.1 345,075 - +0.2 345,075 - +0.6 345,093 + -0.5 345,094 - -0.1 345,094 - +0.8 345,094 - -0.3 345,094 - -1.0 345,095 + +1.6 345,096 - -0.6 345,136 + -1.4 345,136 + +0.2 345,136 + -1.8 345,136 + +1.0 345,136 + -0.0 345,136 + +1.2 345,136 + +0.2 345,136 + -0.3 345,136 + -1.3 345,137 - +0.2 345,137 - -1.3 345,137 - -1.1 345,137 - -1.9 345,137 - +0.4 345,137 - -0.2 345,139 + +0.1 345,139 + +0.9 345,139 + +0.2 345,139 + -1.2 345,139 + -0.4 345,139 + -0.4 345,139 + +0.3 345,139 + +1.9 345,140 - +1.5 345,140 - +1.1 345,140 - +0.9 345,140 - +0.9 345,142 + +0.4 345,142 + -1.7 345,143 - -0.3 345,143 - -1.5 345,157 + -0.9 345,157 + +0.8 345,158 - -1.6 345,174 + +1.9 345,174 + +0.2 345,174 + -0.1 345,175 - -0.7 345,200 + AO353_01645 0.10 +0.3 345,200 + AO353_01645 0.10 +0.4 345,201 - AO353_01645 0.10 +0.7 345,481 + AO353_01645 0.47 -1.4 345,481 + AO353_01645 0.47 +0.9 345,481 + AO353_01645 0.47 +0.6 345,481 + AO353_01645 0.47 -0.5 345,482 - AO353_01645 0.47 +0.1 345,482 - AO353_01645 0.47 +1.3 345,482 - AO353_01645 0.47 +0.3 345,482 - AO353_01645 0.47 -1.4 345,482 - AO353_01645 0.47 -0.3 345,482 - AO353_01645 0.47 +1.1 345,592 + AO353_01645 0.62 +1.9 345,593 - AO353_01645 0.62 -0.4 345,690 + AO353_01645 0.75 -1.9 345,690 + AO353_01645 0.75 +0.9 345,691 - AO353_01645 0.75 +0.1 345,691 - AO353_01645 0.75 -0.7 345,691 - AO353_01645 0.75 +0.4 345,691 - AO353_01645 0.75 -0.3 345,691 - AO353_01645 0.75 +1.4 345,691 - AO353_01645 0.75 -0.6 345,720 + AO353_01645 0.79 -0.1 345,721 - AO353_01645 0.79 +1.3 345,738 + AO353_01645 0.81 -1.0 345,739 - AO353_01645 0.81 -1.4 345,809 + -1.2 345,869 + -1.1 345,870 - -0.8 345,873 + -0.6 345,873 + -0.1 345,873 + -0.1 345,873 + -0.4 345,873 + +0.5 345,874 - -0.2 345,874 - -0.7 345,874 - +1.4 345,883 - -1.4 345,949 + +1.4 345,949 + -0.1 345,949 + -1.0 345,949 + -1.2 345,949 + +1.1 345,950 - +0.9 345,950 - +0.8 345,969 + +1.1 345,969 + -1.9 345,977 + -0.3 345,977 + +1.3 345,978 - -0.6 345,978 - +1.2 345,978 - -1.2 345,978 - -0.1 346,042 + -1.8 346,042 + -0.7 346,042 + -0.8 346,042 + +0.9 346,043 - -0.3 346,043 - +0.4 346,043 - +0.1 346,043 - -1.3 346,043 - -0.9 346,043 - -0.2 346,043 - +0.6 346,043 - -0.5 346,043 - -0.3 346,043 - +1.1 346,262 + AO353_01650 0.11 -1.2 346,332 + AO353_01650 0.15 -0.1 346,332 + AO353_01650 0.15 +0.7 346,332 + AO353_01650 0.15 +2.1 346,333 - AO353_01650 0.15 +0.4 346,333 - AO353_01650 0.15 -0.3 346,333 - AO353_01650 0.15 -1.6 346,637 + AO353_01650 0.30 -2.0 346,637 + AO353_01650 0.30 -0.5 346,638 - AO353_01650 0.30 -0.2 346,638 - AO353_01650 0.30 +0.1
Or see this region's nucleotide sequence