Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01595

Experiment: Paraquat dichloride 0.032 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01590 and AO353_01595 are separated by 67 nucleotidesAO353_01595 and AO353_01600 are separated by 15 nucleotides AO353_01590: AO353_01590 - pilus assembly protein, at 338,286 to 339,632 _01590 AO353_01595: AO353_01595 - Flp pilus assembly protein CpaB, at 339,700 to 340,521 _01595 AO353_01600: AO353_01600 - AAA family ATPase, at 340,537 to 341,868 _01600 Position (kb) 339 340 341Strain fitness (log2 ratio) -2 -1 0 1 2at 338.749 kb on + strand, within AO353_01590at 338.749 kb on + strand, within AO353_01590at 338.749 kb on + strand, within AO353_01590at 338.749 kb on + strand, within AO353_01590at 338.749 kb on + strand, within AO353_01590at 338.749 kb on + strand, within AO353_01590at 338.749 kb on + strand, within AO353_01590at 338.749 kb on + strand, within AO353_01590at 338.749 kb on + strand, within AO353_01590at 338.750 kb on - strand, within AO353_01590at 338.750 kb on - strand, within AO353_01590at 338.750 kb on - strand, within AO353_01590at 338.750 kb on - strand, within AO353_01590at 338.750 kb on - strand, within AO353_01590at 338.753 kb on + strand, within AO353_01590at 338.754 kb on - strand, within AO353_01590at 338.774 kb on - strand, within AO353_01590at 338.800 kb on + strand, within AO353_01590at 338.801 kb on - strand, within AO353_01590at 338.982 kb on - strand, within AO353_01590at 339.025 kb on + strand, within AO353_01590at 339.055 kb on + strand, within AO353_01590at 339.055 kb on + strand, within AO353_01590at 339.055 kb on + strand, within AO353_01590at 339.055 kb on + strand, within AO353_01590at 339.055 kb on + strand, within AO353_01590at 339.056 kb on - strand, within AO353_01590at 339.056 kb on - strand, within AO353_01590at 339.056 kb on - strand, within AO353_01590at 339.056 kb on - strand, within AO353_01590at 339.056 kb on - strand, within AO353_01590at 339.056 kb on - strand, within AO353_01590at 339.232 kb on + strand, within AO353_01590at 339.232 kb on + strand, within AO353_01590at 339.232 kb on + strand, within AO353_01590at 339.232 kb on + strand, within AO353_01590at 339.232 kb on + strand, within AO353_01590at 339.232 kb on + strand, within AO353_01590at 339.233 kb on - strand, within AO353_01590at 339.233 kb on - strand, within AO353_01590at 339.233 kb on - strand, within AO353_01590at 339.233 kb on - strand, within AO353_01590at 339.233 kb on - strand, within AO353_01590at 339.233 kb on - strand, within AO353_01590at 339.233 kb on - strand, within AO353_01590at 339.233 kb on - strand, within AO353_01590at 339.374 kb on + strand, within AO353_01590at 339.375 kb on - strand, within AO353_01590at 339.398 kb on + strand, within AO353_01590at 339.398 kb on + strand, within AO353_01590at 339.399 kb on - strand, within AO353_01590at 339.399 kb on - strand, within AO353_01590at 339.399 kb on - strand, within AO353_01590at 339.407 kb on + strand, within AO353_01590at 339.408 kb on - strand, within AO353_01590at 339.408 kb on - strand, within AO353_01590at 339.537 kb on - strandat 339.565 kb on - strandat 339.565 kb on - strandat 339.676 kb on + strandat 339.676 kb on + strandat 339.768 kb on + strandat 339.768 kb on + strandat 339.775 kb on + strandat 339.775 kb on + strandat 339.823 kb on - strand, within AO353_01595at 339.841 kb on + strand, within AO353_01595at 339.841 kb on + strand, within AO353_01595at 339.842 kb on - strand, within AO353_01595at 340.393 kb on + strand, within AO353_01595at 340.393 kb on + strand, within AO353_01595at 340.491 kb on + strandat 340.491 kb on + strandat 340.491 kb on + strandat 340.492 kb on - strandat 340.492 kb on - strandat 340.492 kb on - strandat 340.492 kb on - strandat 340.492 kb on - strandat 340.492 kb on - strandat 340.509 kb on + strandat 340.509 kb on + strandat 340.527 kb on + strandat 340.528 kb on - strandat 340.528 kb on - strandat 340.528 kb on - strandat 340.528 kb on - strandat 340.535 kb on - strandat 340.535 kb on - strandat 340.562 kb on + strandat 340.562 kb on + strandat 340.562 kb on + strandat 340.562 kb on + strandat 340.562 kb on + strandat 340.562 kb on + strandat 340.562 kb on + strandat 340.563 kb on - strandat 340.563 kb on - strandat 340.563 kb on - strandat 340.563 kb on - strandat 340.695 kb on - strand, within AO353_01600at 340.708 kb on + strand, within AO353_01600at 340.708 kb on + strand, within AO353_01600at 340.708 kb on + strand, within AO353_01600at 340.708 kb on + strand, within AO353_01600at 340.709 kb on - strandat 340.709 kb on - strand, within AO353_01600at 340.778 kb on + strand, within AO353_01600at 340.779 kb on - strand, within AO353_01600at 340.815 kb on - strand, within AO353_01600at 341.215 kb on + strand, within AO353_01600at 341.215 kb on + strand, within AO353_01600at 341.215 kb on + strand, within AO353_01600at 341.215 kb on + strand, within AO353_01600at 341.215 kb on + strand, within AO353_01600at 341.216 kb on - strand, within AO353_01600at 341.216 kb on - strand, within AO353_01600at 341.228 kb on + strand, within AO353_01600at 341.228 kb on + strandat 341.228 kb on + strand, within AO353_01600at 341.228 kb on + strand, within AO353_01600at 341.228 kb on + strand, within AO353_01600at 341.228 kb on + strand, within AO353_01600at 341.228 kb on + strand, within AO353_01600at 341.228 kb on + strand, within AO353_01600at 341.229 kb on - strand, within AO353_01600at 341.229 kb on - strand, within AO353_01600at 341.229 kb on - strand, within AO353_01600at 341.229 kb on - strand, within AO353_01600at 341.229 kb on - strand, within AO353_01600at 341.229 kb on - strandat 341.315 kb on + strand, within AO353_01600at 341.315 kb on + strand, within AO353_01600at 341.315 kb on + strand, within AO353_01600at 341.315 kb on + strand, within AO353_01600at 341.315 kb on + strand, within AO353_01600at 341.315 kb on + strand, within AO353_01600at 341.315 kb on + strand, within AO353_01600at 341.315 kb on + strand, within AO353_01600at 341.315 kb on + strand, within AO353_01600at 341.315 kb on + strand, within AO353_01600at 341.315 kb on + strand, within AO353_01600at 341.315 kb on + strand, within AO353_01600at 341.315 kb on + strand, within AO353_01600at 341.316 kb on - strand, within AO353_01600at 341.316 kb on - strand, within AO353_01600at 341.316 kb on - strand, within AO353_01600at 341.316 kb on - strand, within AO353_01600at 341.316 kb on - strand, within AO353_01600at 341.342 kb on + strand, within AO353_01600at 341.342 kb on + strand, within AO353_01600at 341.342 kb on + strand, within AO353_01600at 341.342 kb on + strand, within AO353_01600at 341.342 kb on + strand, within AO353_01600at 341.343 kb on - strand, within AO353_01600at 341.433 kb on + strand, within AO353_01600

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.032 mg/mL
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338,749 + AO353_01590 0.34 +1.2
338,749 + AO353_01590 0.34 -0.2
338,749 + AO353_01590 0.34 -1.4
338,749 + AO353_01590 0.34 +0.4
338,749 + AO353_01590 0.34 -0.6
338,749 + AO353_01590 0.34 -2.0
338,749 + AO353_01590 0.34 -1.5
338,749 + AO353_01590 0.34 -2.1
338,749 + AO353_01590 0.34 +0.6
338,750 - AO353_01590 0.34 -2.1
338,750 - AO353_01590 0.34 +1.0
338,750 - AO353_01590 0.34 -2.1
338,750 - AO353_01590 0.34 -0.2
338,750 - AO353_01590 0.34 -0.4
338,753 + AO353_01590 0.35 -0.0
338,754 - AO353_01590 0.35 +0.9
338,774 - AO353_01590 0.36 +0.5
338,800 + AO353_01590 0.38 -0.8
338,801 - AO353_01590 0.38 +0.4
338,982 - AO353_01590 0.52 +1.2
339,025 + AO353_01590 0.55 -0.3
339,055 + AO353_01590 0.57 +0.8
339,055 + AO353_01590 0.57 +2.2
339,055 + AO353_01590 0.57 -0.3
339,055 + AO353_01590 0.57 +0.9
339,055 + AO353_01590 0.57 -0.1
339,056 - AO353_01590 0.57 -1.2
339,056 - AO353_01590 0.57 -1.6
339,056 - AO353_01590 0.57 -0.4
339,056 - AO353_01590 0.57 -1.1
339,056 - AO353_01590 0.57 +0.6
339,056 - AO353_01590 0.57 -1.6
339,232 + AO353_01590 0.70 -0.6
339,232 + AO353_01590 0.70 -1.4
339,232 + AO353_01590 0.70 -0.6
339,232 + AO353_01590 0.70 -1.5
339,232 + AO353_01590 0.70 -1.0
339,232 + AO353_01590 0.70 +0.5
339,233 - AO353_01590 0.70 -0.5
339,233 - AO353_01590 0.70 -1.1
339,233 - AO353_01590 0.70 -0.5
339,233 - AO353_01590 0.70 +1.7
339,233 - AO353_01590 0.70 -0.3
339,233 - AO353_01590 0.70 +0.9
339,233 - AO353_01590 0.70 +0.8
339,233 - AO353_01590 0.70 -1.4
339,374 + AO353_01590 0.81 +0.8
339,375 - AO353_01590 0.81 +1.0
339,398 + AO353_01590 0.83 +0.3
339,398 + AO353_01590 0.83 -0.8
339,399 - AO353_01590 0.83 +1.4
339,399 - AO353_01590 0.83 -0.5
339,399 - AO353_01590 0.83 -1.7
339,407 + AO353_01590 0.83 +1.6
339,408 - AO353_01590 0.83 +0.2
339,408 - AO353_01590 0.83 -0.3
339,537 - +0.1
339,565 - -1.3
339,565 - -2.4
339,676 + +0.4
339,676 + +0.5
339,768 + -0.6
339,768 + +0.3
339,775 + -0.6
339,775 + +0.8
339,823 - AO353_01595 0.15 -1.2
339,841 + AO353_01595 0.17 -2.1
339,841 + AO353_01595 0.17 -0.5
339,842 - AO353_01595 0.17 -1.9
340,393 + AO353_01595 0.84 +0.0
340,393 + AO353_01595 0.84 +1.1
340,491 + +0.5
340,491 + +0.7
340,491 + +0.2
340,492 - -0.2
340,492 - +0.7
340,492 - +0.3
340,492 - -0.2
340,492 - +0.1
340,492 - -1.4
340,509 + +0.2
340,509 + -1.3
340,527 + +0.5
340,528 - -1.7
340,528 - +0.6
340,528 - +0.2
340,528 - +0.5
340,535 - +0.6
340,535 - +0.5
340,562 + +1.9
340,562 + +0.8
340,562 + -0.6
340,562 + -0.4
340,562 + +0.3
340,562 + -1.6
340,562 + +1.1
340,563 - +0.0
340,563 - +0.2
340,563 - -0.1
340,563 - -1.6
340,695 - AO353_01600 0.12 +0.1
340,708 + AO353_01600 0.13 -2.7
340,708 + AO353_01600 0.13 -1.0
340,708 + AO353_01600 0.13 +2.7
340,708 + AO353_01600 0.13 -1.2
340,709 - +2.7
340,709 - AO353_01600 0.13 +2.0
340,778 + AO353_01600 0.18 +0.2
340,779 - AO353_01600 0.18 -1.0
340,815 - AO353_01600 0.21 -2.1
341,215 + AO353_01600 0.51 +0.5
341,215 + AO353_01600 0.51 -0.1
341,215 + AO353_01600 0.51 +0.6
341,215 + AO353_01600 0.51 +2.7
341,215 + AO353_01600 0.51 -0.7
341,216 - AO353_01600 0.51 +0.7
341,216 - AO353_01600 0.51 +2.1
341,228 + AO353_01600 0.52 -2.4
341,228 + +2.7
341,228 + AO353_01600 0.52 +1.2
341,228 + AO353_01600 0.52 +0.4
341,228 + AO353_01600 0.52 -1.9
341,228 + AO353_01600 0.52 +0.0
341,228 + AO353_01600 0.52 +0.2
341,228 + AO353_01600 0.52 -1.0
341,229 - AO353_01600 0.52 +0.9
341,229 - AO353_01600 0.52 +0.2
341,229 - AO353_01600 0.52 +0.0
341,229 - AO353_01600 0.52 -0.1
341,229 - AO353_01600 0.52 -0.4
341,229 - +1.7
341,315 + AO353_01600 0.58 -0.0
341,315 + AO353_01600 0.58 -0.8
341,315 + AO353_01600 0.58 +0.5
341,315 + AO353_01600 0.58 +0.2
341,315 + AO353_01600 0.58 -0.9
341,315 + AO353_01600 0.58 +1.5
341,315 + AO353_01600 0.58 +0.1
341,315 + AO353_01600 0.58 +0.4
341,315 + AO353_01600 0.58 +1.9
341,315 + AO353_01600 0.58 +0.3
341,315 + AO353_01600 0.58 -1.0
341,315 + AO353_01600 0.58 -0.5
341,315 + AO353_01600 0.58 -0.7
341,316 - AO353_01600 0.58 +0.6
341,316 - AO353_01600 0.58 +0.5
341,316 - AO353_01600 0.58 -1.3
341,316 - AO353_01600 0.58 +0.6
341,316 - AO353_01600 0.58 -0.3
341,342 + AO353_01600 0.60 +1.1
341,342 + AO353_01600 0.60 +2.0
341,342 + AO353_01600 0.60 +0.1
341,342 + AO353_01600 0.60 +0.0
341,342 + AO353_01600 0.60 -0.1
341,343 - AO353_01600 0.61 -1.5
341,433 + AO353_01600 0.67 +1.7

Or see this region's nucleotide sequence