Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS17385

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS17375 and ABZR86_RS17380 are separated by 87 nucleotidesABZR86_RS17380 and ABZR86_RS17385 are separated by 96 nucleotidesABZR86_RS17385 and ABZR86_RS17390 are separated by 29 nucleotidesABZR86_RS17390 and ABZR86_RS17395 are separated by 214 nucleotides ABZR86_RS17375: ABZR86_RS17375 - ABC transporter ATP-binding protein, at 3,925,580 to 3,926,503 _RS17375 ABZR86_RS17380: ABZR86_RS17380 - LON peptidase substrate-binding domain-containing protein, at 3,926,591 to 3,927,193 _RS17380 ABZR86_RS17385: ABZR86_RS17385 - NAD(P)-dependent oxidoreductase, at 3,927,290 to 3,928,108 _RS17385 ABZR86_RS17390: ABZR86_RS17390 - VOC family protein, at 3,928,138 to 3,928,560 _RS17390 ABZR86_RS17395: ABZR86_RS17395 - sigma-54 dependent transcriptional regulator, at 3,928,775 to 3,930,112 _RS17395 Position (kb) 3927 3928 3929Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3926.503 kb on + strandat 3926.503 kb on + strandat 3926.503 kb on + strandat 3926.503 kb on + strandat 3926.503 kb on + strandat 3926.503 kb on + strandat 3926.504 kb on - strandat 3926.504 kb on - strandat 3926.504 kb on - strandat 3926.510 kb on + strandat 3926.510 kb on + strandat 3926.510 kb on + strandat 3926.510 kb on + strandat 3926.510 kb on + strandat 3926.510 kb on + strandat 3926.511 kb on - strandat 3926.511 kb on - strandat 3926.511 kb on - strandat 3926.511 kb on - strandat 3926.522 kb on + strandat 3926.523 kb on - strandat 3926.523 kb on - strandat 3926.577 kb on + strandat 3926.578 kb on - strandat 3926.649 kb on - strandat 3927.047 kb on + strand, within ABZR86_RS17380at 3927.248 kb on + strandat 3927.248 kb on + strandat 3927.248 kb on + strandat 3927.249 kb on - strandat 3927.249 kb on - strandat 3927.249 kb on - strandat 3927.724 kb on + strand, within ABZR86_RS17385at 3927.724 kb on + strand, within ABZR86_RS17385at 3927.724 kb on + strand, within ABZR86_RS17385at 3927.724 kb on + strand, within ABZR86_RS17385at 3927.724 kb on + strand, within ABZR86_RS17385at 3927.725 kb on - strand, within ABZR86_RS17385at 3927.725 kb on - strand, within ABZR86_RS17385at 3927.780 kb on - strand, within ABZR86_RS17385at 3927.780 kb on - strand, within ABZR86_RS17385at 3927.780 kb on - strand, within ABZR86_RS17385at 3927.780 kb on - strand, within ABZR86_RS17385at 3928.058 kb on + strandat 3928.058 kb on + strandat 3928.059 kb on - strandat 3928.059 kb on - strandat 3928.095 kb on + strandat 3928.095 kb on + strandat 3928.095 kb on + strandat 3928.096 kb on - strandat 3928.132 kb on + strandat 3928.132 kb on + strandat 3928.133 kb on - strandat 3928.133 kb on - strandat 3928.133 kb on - strandat 3928.144 kb on + strandat 3928.144 kb on + strandat 3928.145 kb on - strandat 3928.145 kb on - strandat 3928.145 kb on - strandat 3928.264 kb on + strand, within ABZR86_RS17390at 3928.264 kb on + strand, within ABZR86_RS17390at 3928.265 kb on - strand, within ABZR86_RS17390at 3928.265 kb on - strand, within ABZR86_RS17390at 3928.265 kb on - strand, within ABZR86_RS17390at 3928.265 kb on - strand, within ABZR86_RS17390at 3928.309 kb on + strand, within ABZR86_RS17390at 3928.310 kb on - strand, within ABZR86_RS17390at 3928.310 kb on - strand, within ABZR86_RS17390at 3928.310 kb on - strand, within ABZR86_RS17390at 3928.310 kb on - strand, within ABZR86_RS17390at 3928.310 kb on - strand, within ABZR86_RS17390at 3928.333 kb on + strand, within ABZR86_RS17390at 3928.333 kb on + strand, within ABZR86_RS17390at 3928.333 kb on + strand, within ABZR86_RS17390at 3928.334 kb on - strand, within ABZR86_RS17390at 3928.334 kb on - strand, within ABZR86_RS17390at 3928.334 kb on - strand, within ABZR86_RS17390at 3928.384 kb on + strand, within ABZR86_RS17390at 3928.384 kb on + strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.417 kb on + strand, within ABZR86_RS17390at 3928.418 kb on - strand, within ABZR86_RS17390at 3928.418 kb on - strand, within ABZR86_RS17390at 3928.418 kb on - strand, within ABZR86_RS17390at 3928.418 kb on - strand, within ABZR86_RS17390at 3928.418 kb on - strand, within ABZR86_RS17390at 3928.418 kb on - strand, within ABZR86_RS17390at 3928.546 kb on - strandat 3928.546 kb on - strandat 3928.558 kb on + strandat 3928.559 kb on - strandat 3928.653 kb on + strandat 3928.653 kb on + strandat 3928.653 kb on + strandat 3928.654 kb on - strandat 3928.654 kb on - strandat 3928.654 kb on - strandat 3928.654 kb on - strandat 3928.655 kb on + strandat 3928.669 kb on + strandat 3928.669 kb on + strandat 3928.669 kb on + strandat 3928.670 kb on - strandat 3928.670 kb on - strandat 3928.670 kb on - strandat 3928.683 kb on - strandat 3928.768 kb on + strandat 3928.769 kb on - strandat 3928.769 kb on - strandat 3928.868 kb on + strandat 3928.869 kb on - strandat 3928.869 kb on - strandat 3928.869 kb on - strandat 3928.924 kb on + strand, within ABZR86_RS17395at 3928.925 kb on - strand, within ABZR86_RS17395at 3928.925 kb on - strand, within ABZR86_RS17395at 3928.925 kb on - strand, within ABZR86_RS17395at 3928.925 kb on - strand, within ABZR86_RS17395at 3929.077 kb on + strand, within ABZR86_RS17395at 3929.077 kb on + strand, within ABZR86_RS17395at 3929.077 kb on + strand, within ABZR86_RS17395at 3929.077 kb on + strand, within ABZR86_RS17395at 3929.077 kb on + strand, within ABZR86_RS17395at 3929.078 kb on - strand, within ABZR86_RS17395at 3929.078 kb on - strand, within ABZR86_RS17395at 3929.078 kb on - strand, within ABZR86_RS17395

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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3,926,503 + -1.5
3,926,503 + -2.6
3,926,503 + -0.9
3,926,503 + -0.1
3,926,503 + -0.0
3,926,503 + -0.3
3,926,504 - +0.2
3,926,504 - -0.0
3,926,504 - -0.5
3,926,510 + -0.0
3,926,510 + -0.2
3,926,510 + -0.6
3,926,510 + +0.0
3,926,510 + +0.6
3,926,510 + +0.0
3,926,511 - -0.6
3,926,511 - -0.2
3,926,511 - -1.4
3,926,511 - +0.7
3,926,522 + +0.2
3,926,523 - -1.0
3,926,523 - +0.0
3,926,577 + -1.4
3,926,578 - -0.6
3,926,649 - -0.5
3,927,047 + ABZR86_RS17380 0.76 -0.9
3,927,248 + -0.1
3,927,248 + +0.0
3,927,248 + -1.1
3,927,249 - +0.3
3,927,249 - -0.7
3,927,249 - -0.3
3,927,724 + ABZR86_RS17385 0.53 -2.0
3,927,724 + ABZR86_RS17385 0.53 -0.0
3,927,724 + ABZR86_RS17385 0.53 +0.0
3,927,724 + ABZR86_RS17385 0.53 -1.4
3,927,724 + ABZR86_RS17385 0.53 +0.5
3,927,725 - ABZR86_RS17385 0.53 -1.0
3,927,725 - ABZR86_RS17385 0.53 -0.3
3,927,780 - ABZR86_RS17385 0.60 -1.4
3,927,780 - ABZR86_RS17385 0.60 +0.7
3,927,780 - ABZR86_RS17385 0.60 +0.6
3,927,780 - ABZR86_RS17385 0.60 -1.4
3,928,058 + +0.2
3,928,058 + +0.6
3,928,059 - -1.9
3,928,059 - +0.5
3,928,095 + -0.3
3,928,095 + +0.8
3,928,095 + +0.0
3,928,096 - -3.1
3,928,132 + -0.3
3,928,132 + +0.1
3,928,133 - +0.0
3,928,133 - -0.2
3,928,133 - -0.8
3,928,144 + +0.6
3,928,144 + -2.1
3,928,145 - +0.3
3,928,145 - -1.8
3,928,145 - -0.8
3,928,264 + ABZR86_RS17390 0.30 +0.2
3,928,264 + ABZR86_RS17390 0.30 +1.5
3,928,265 - ABZR86_RS17390 0.30 -1.5
3,928,265 - ABZR86_RS17390 0.30 -0.9
3,928,265 - ABZR86_RS17390 0.30 +0.9
3,928,265 - ABZR86_RS17390 0.30 -0.2
3,928,309 + ABZR86_RS17390 0.40 -1.5
3,928,310 - ABZR86_RS17390 0.41 -0.3
3,928,310 - ABZR86_RS17390 0.41 +0.6
3,928,310 - ABZR86_RS17390 0.41 -0.7
3,928,310 - ABZR86_RS17390 0.41 -0.1
3,928,310 - ABZR86_RS17390 0.41 -0.5
3,928,333 + ABZR86_RS17390 0.46 -1.4
3,928,333 + ABZR86_RS17390 0.46 -0.8
3,928,333 + ABZR86_RS17390 0.46 -0.3
3,928,334 - ABZR86_RS17390 0.46 +0.5
3,928,334 - ABZR86_RS17390 0.46 +1.0
3,928,334 - ABZR86_RS17390 0.46 -0.6
3,928,384 + ABZR86_RS17390 0.58 +0.1
3,928,384 + ABZR86_RS17390 0.58 -2.3
3,928,385 - ABZR86_RS17390 0.58 -3.0
3,928,385 - ABZR86_RS17390 0.58 +0.1
3,928,385 - ABZR86_RS17390 0.58 -0.5
3,928,385 - ABZR86_RS17390 0.58 -0.5
3,928,385 - ABZR86_RS17390 0.58 +1.8
3,928,385 - ABZR86_RS17390 0.58 +2.3
3,928,385 - ABZR86_RS17390 0.58 -0.2
3,928,417 + ABZR86_RS17390 0.66 -1.0
3,928,418 - ABZR86_RS17390 0.66 +0.3
3,928,418 - ABZR86_RS17390 0.66 -0.9
3,928,418 - ABZR86_RS17390 0.66 +1.0
3,928,418 - ABZR86_RS17390 0.66 -1.8
3,928,418 - ABZR86_RS17390 0.66 +0.8
3,928,418 - ABZR86_RS17390 0.66 -2.3
3,928,546 - -0.5
3,928,546 - -1.2
3,928,558 + +0.1
3,928,559 - -0.6
3,928,653 + -0.7
3,928,653 + +1.2
3,928,653 + +0.3
3,928,654 - +0.8
3,928,654 - +4.4
3,928,654 - +0.9
3,928,654 - -0.8
3,928,655 + -0.8
3,928,669 + -0.3
3,928,669 + +0.6
3,928,669 + +0.8
3,928,670 - +0.8
3,928,670 - -0.6
3,928,670 - -0.6
3,928,683 - -1.8
3,928,768 + +1.1
3,928,769 - +0.5
3,928,769 - -2.6
3,928,868 + -0.3
3,928,869 - +0.5
3,928,869 - +0.4
3,928,869 - +0.4
3,928,924 + ABZR86_RS17395 0.11 -1.4
3,928,925 - ABZR86_RS17395 0.11 +0.3
3,928,925 - ABZR86_RS17395 0.11 +1.5
3,928,925 - ABZR86_RS17395 0.11 +1.1
3,928,925 - ABZR86_RS17395 0.11 -1.5
3,929,077 + ABZR86_RS17395 0.23 +0.1
3,929,077 + ABZR86_RS17395 0.23 +0.1
3,929,077 + ABZR86_RS17395 0.23 -0.3
3,929,077 + ABZR86_RS17395 0.23 +0.2
3,929,077 + ABZR86_RS17395 0.23 +0.2
3,929,078 - ABZR86_RS17395 0.23 +0.7
3,929,078 - ABZR86_RS17395 0.23 +1.3
3,929,078 - ABZR86_RS17395 0.23 -0.2

Or see this region's nucleotide sequence