Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07515

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS07510 and ABZR86_RS07515 are separated by 9 nucleotidesABZR86_RS07515 and ABZR86_RS07520 are separated by 222 nucleotides ABZR86_RS07510: ABZR86_RS07510 - diguanylate cyclase, at 1,654,895 to 1,656,574 _RS07510 ABZR86_RS07515: ABZR86_RS07515 - Ivy family c-type lysozyme inhibitor, at 1,656,584 to 1,657,138 _RS07515 ABZR86_RS07520: ABZR86_RS07520 - thiamine pyrophosphate-dependent enzyme, at 1,657,361 to 1,659,628 _RS07520 Position (kb) 1656 1657 1658Strain fitness (log2 ratio) -2 -1 0 1 2at 1655.785 kb on - strand, within ABZR86_RS07510at 1656.470 kb on + strandat 1656.470 kb on + strandat 1656.470 kb on + strandat 1656.501 kb on + strandat 1656.597 kb on + strandat 1656.597 kb on + strandat 1656.597 kb on + strandat 1656.597 kb on + strandat 1656.598 kb on - strandat 1656.598 kb on - strandat 1656.598 kb on - strandat 1656.598 kb on - strandat 1656.598 kb on - strandat 1656.598 kb on - strandat 1656.598 kb on - strandat 1656.847 kb on + strand, within ABZR86_RS07515at 1656.847 kb on + strand, within ABZR86_RS07515at 1656.848 kb on - strand, within ABZR86_RS07515at 1656.943 kb on - strand, within ABZR86_RS07515at 1656.943 kb on - strand, within ABZR86_RS07515at 1657.183 kb on - strandat 1657.257 kb on + strandat 1657.258 kb on - strandat 1657.343 kb on + strandat 1657.343 kb on + strandat 1657.343 kb on + strandat 1657.344 kb on - strandat 1657.344 kb on - strandat 1657.344 kb on - strandat 1657.363 kb on - strandat 1657.363 kb on - strandat 1657.440 kb on + strandat 1657.440 kb on + strandat 1657.440 kb on + strandat 1657.440 kb on + strandat 1657.445 kb on - strandat 1657.445 kb on - strandat 1657.737 kb on + strand, within ABZR86_RS07520at 1657.738 kb on - strand, within ABZR86_RS07520at 1657.739 kb on + strand, within ABZR86_RS07520at 1657.740 kb on - strand, within ABZR86_RS07520at 1657.833 kb on + strand, within ABZR86_RS07520at 1657.833 kb on + strand, within ABZR86_RS07520at 1657.833 kb on + strand, within ABZR86_RS07520at 1657.834 kb on - strand, within ABZR86_RS07520at 1657.834 kb on - strand, within ABZR86_RS07520at 1657.834 kb on - strand, within ABZR86_RS07520at 1657.834 kb on - strand, within ABZR86_RS07520at 1657.834 kb on - strand, within ABZR86_RS07520at 1657.834 kb on - strand, within ABZR86_RS07520at 1657.862 kb on + strand, within ABZR86_RS07520at 1657.957 kb on + strand, within ABZR86_RS07520at 1658.125 kb on - strand, within ABZR86_RS07520at 1658.134 kb on - strand, within ABZR86_RS07520

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,655,785 - ABZR86_RS07510 0.53 -0.3
1,656,470 + -1.3
1,656,470 + -0.9
1,656,470 + +0.3
1,656,501 + -0.5
1,656,597 + +0.4
1,656,597 + +2.1
1,656,597 + +0.5
1,656,597 + -0.2
1,656,598 - +0.3
1,656,598 - -1.0
1,656,598 - -2.1
1,656,598 - -0.2
1,656,598 - +0.5
1,656,598 - -0.4
1,656,598 - -2.0
1,656,847 + ABZR86_RS07515 0.47 +0.4
1,656,847 + ABZR86_RS07515 0.47 -1.1
1,656,848 - ABZR86_RS07515 0.48 +1.8
1,656,943 - ABZR86_RS07515 0.65 -0.6
1,656,943 - ABZR86_RS07515 0.65 -0.5
1,657,183 - -0.5
1,657,257 + -1.3
1,657,258 - +0.3
1,657,343 + -0.3
1,657,343 + +0.1
1,657,343 + +1.0
1,657,344 - -0.0
1,657,344 - -0.1
1,657,344 - +0.2
1,657,363 - +2.0
1,657,363 - -0.8
1,657,440 + -0.4
1,657,440 + +1.8
1,657,440 + -0.9
1,657,440 + -0.2
1,657,445 - +1.5
1,657,445 - +1.0
1,657,737 + ABZR86_RS07520 0.17 +1.0
1,657,738 - ABZR86_RS07520 0.17 -0.7
1,657,739 + ABZR86_RS07520 0.17 +0.5
1,657,740 - ABZR86_RS07520 0.17 -0.3
1,657,833 + ABZR86_RS07520 0.21 +0.5
1,657,833 + ABZR86_RS07520 0.21 -0.3
1,657,833 + ABZR86_RS07520 0.21 +0.6
1,657,834 - ABZR86_RS07520 0.21 -1.1
1,657,834 - ABZR86_RS07520 0.21 +0.7
1,657,834 - ABZR86_RS07520 0.21 -1.3
1,657,834 - ABZR86_RS07520 0.21 -0.9
1,657,834 - ABZR86_RS07520 0.21 +1.0
1,657,834 - ABZR86_RS07520 0.21 -1.0
1,657,862 + ABZR86_RS07520 0.22 +0.6
1,657,957 + ABZR86_RS07520 0.26 -1.0
1,658,125 - ABZR86_RS07520 0.34 +0.1
1,658,134 - ABZR86_RS07520 0.34 -0.8

Or see this region's nucleotide sequence