Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06305

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06295 and ABZR86_RS06300 are separated by 6 nucleotidesABZR86_RS06300 and ABZR86_RS06305 are separated by 140 nucleotidesABZR86_RS06305 and ABZR86_RS06310 are separated by 188 nucleotidesABZR86_RS06310 and ABZR86_RS06315 are separated by 4 nucleotides ABZR86_RS06295: ABZR86_RS06295 - biopolymer transporter ExbD, at 1,405,416 to 1,405,847 _RS06295 ABZR86_RS06300: ABZR86_RS06300 - MotA/TolQ/ExbB proton channel family protein, at 1,405,854 to 1,406,489 _RS06300 ABZR86_RS06305: ABZR86_RS06305 - DNA internalization-related competence protein ComEC/Rec2, at 1,406,630 to 1,408,879 _RS06305 ABZR86_RS06310: ABZR86_RS06310 - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 1,409,068 to 1,409,760 _RS06310 ABZR86_RS06315: ABZR86_RS06315 - lipoprotein-releasing ABC transporter permease subunit, at 1,409,765 to 1,411,009 _RS06315 Position (kb) 1406 1407 1408 1409Strain fitness (log2 ratio) -2 -1 0 1 2at 1405.633 kb on + strand, within ABZR86_RS06295at 1405.633 kb on + strand, within ABZR86_RS06295at 1405.633 kb on + strand, within ABZR86_RS06295at 1405.633 kb on + strand, within ABZR86_RS06295at 1405.634 kb on - strand, within ABZR86_RS06295at 1405.634 kb on - strand, within ABZR86_RS06295at 1405.636 kb on + strand, within ABZR86_RS06295at 1405.636 kb on + strand, within ABZR86_RS06295at 1405.637 kb on - strand, within ABZR86_RS06295at 1405.637 kb on - strand, within ABZR86_RS06295at 1406.000 kb on - strand, within ABZR86_RS06300at 1406.189 kb on - strand, within ABZR86_RS06300at 1406.509 kb on - strandat 1406.545 kb on + strandat 1406.545 kb on + strandat 1406.546 kb on - strandat 1406.546 kb on - strandat 1406.546 kb on - strandat 1406.546 kb on - strandat 1406.546 kb on - strandat 1406.585 kb on + strandat 1406.586 kb on - strandat 1406.631 kb on + strandat 1406.631 kb on + strandat 1406.632 kb on - strandat 1406.632 kb on - strandat 1406.632 kb on - strandat 1406.632 kb on - strandat 1406.632 kb on - strandat 1406.632 kb on - strandat 1406.632 kb on - strandat 1406.632 kb on - strandat 1406.760 kb on + strandat 1406.760 kb on + strandat 1406.761 kb on - strandat 1406.761 kb on - strandat 1406.761 kb on - strandat 1407.543 kb on + strand, within ABZR86_RS06305at 1407.544 kb on - strand, within ABZR86_RS06305at 1407.858 kb on + strand, within ABZR86_RS06305at 1407.858 kb on + strand, within ABZR86_RS06305at 1407.858 kb on + strand, within ABZR86_RS06305at 1407.858 kb on + strand, within ABZR86_RS06305at 1407.858 kb on + strand, within ABZR86_RS06305at 1407.858 kb on + strand, within ABZR86_RS06305at 1407.858 kb on + strand, within ABZR86_RS06305at 1407.859 kb on - strand, within ABZR86_RS06305at 1407.859 kb on - strand, within ABZR86_RS06305at 1407.859 kb on - strand, within ABZR86_RS06305at 1407.859 kb on - strand, within ABZR86_RS06305at 1407.859 kb on - strand, within ABZR86_RS06305at 1408.143 kb on + strand, within ABZR86_RS06305at 1408.143 kb on + strand, within ABZR86_RS06305at 1408.278 kb on - strand, within ABZR86_RS06305at 1408.416 kb on + strand, within ABZR86_RS06305at 1408.417 kb on - strand, within ABZR86_RS06305at 1408.417 kb on - strand, within ABZR86_RS06305at 1408.417 kb on - strand, within ABZR86_RS06305at 1408.417 kb on - strand, within ABZR86_RS06305at 1408.992 kb on - strandat 1409.015 kb on + strandat 1409.015 kb on + strandat 1409.016 kb on - strandat 1409.016 kb on - strandat 1409.016 kb on - strandat 1409.016 kb on - strandat 1409.016 kb on - strandat 1409.101 kb on - strandat 1409.767 kb on - strandat 1409.767 kb on - strandat 1409.773 kb on - strandat 1409.773 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,405,633 + ABZR86_RS06295 0.50 -1.4
1,405,633 + ABZR86_RS06295 0.50 -1.7
1,405,633 + ABZR86_RS06295 0.50 +1.5
1,405,633 + ABZR86_RS06295 0.50 -1.7
1,405,634 - ABZR86_RS06295 0.50 -1.1
1,405,634 - ABZR86_RS06295 0.50 -1.2
1,405,636 + ABZR86_RS06295 0.51 +0.5
1,405,636 + ABZR86_RS06295 0.51 +1.5
1,405,637 - ABZR86_RS06295 0.51 -1.4
1,405,637 - ABZR86_RS06295 0.51 -0.2
1,406,000 - ABZR86_RS06300 0.23 -0.8
1,406,189 - ABZR86_RS06300 0.53 -2.0
1,406,509 - -0.5
1,406,545 + +0.8
1,406,545 + +0.4
1,406,546 - -1.6
1,406,546 - -1.0
1,406,546 - -0.1
1,406,546 - +0.4
1,406,546 - +0.9
1,406,585 + -0.1
1,406,586 - -0.6
1,406,631 + -0.3
1,406,631 + -0.5
1,406,632 - -1.3
1,406,632 - +1.1
1,406,632 - -0.1
1,406,632 - +0.8
1,406,632 - -0.5
1,406,632 - -0.1
1,406,632 - +1.3
1,406,632 - -1.4
1,406,760 + -0.5
1,406,760 + +0.9
1,406,761 - -2.0
1,406,761 - -0.5
1,406,761 - -0.7
1,407,543 + ABZR86_RS06305 0.41 -0.7
1,407,544 - ABZR86_RS06305 0.41 +2.6
1,407,858 + ABZR86_RS06305 0.55 +0.1
1,407,858 + ABZR86_RS06305 0.55 +1.0
1,407,858 + ABZR86_RS06305 0.55 -1.0
1,407,858 + ABZR86_RS06305 0.55 -1.5
1,407,858 + ABZR86_RS06305 0.55 +0.3
1,407,858 + ABZR86_RS06305 0.55 -0.3
1,407,858 + ABZR86_RS06305 0.55 +1.4
1,407,859 - ABZR86_RS06305 0.55 +0.6
1,407,859 - ABZR86_RS06305 0.55 +0.0
1,407,859 - ABZR86_RS06305 0.55 -1.7
1,407,859 - ABZR86_RS06305 0.55 -0.1
1,407,859 - ABZR86_RS06305 0.55 -1.7
1,408,143 + ABZR86_RS06305 0.67 +1.3
1,408,143 + ABZR86_RS06305 0.67 -0.3
1,408,278 - ABZR86_RS06305 0.73 +0.9
1,408,416 + ABZR86_RS06305 0.79 -1.1
1,408,417 - ABZR86_RS06305 0.79 +0.8
1,408,417 - ABZR86_RS06305 0.79 -1.0
1,408,417 - ABZR86_RS06305 0.79 +0.7
1,408,417 - ABZR86_RS06305 0.79 +0.6
1,408,992 - -0.5
1,409,015 + -0.1
1,409,015 + -0.6
1,409,016 - -0.9
1,409,016 - -0.1
1,409,016 - -0.5
1,409,016 - +1.5
1,409,016 - -1.5
1,409,101 - +0.0
1,409,767 - +0.5
1,409,767 - +0.5
1,409,773 - -1.9
1,409,773 - -1.6

Or see this region's nucleotide sequence