Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001237

Experiment: L-Histidine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Histidine (C)
1,380,215	+		ABIE53_001235	0.83	+0.0
1,380,215	+		ABIE53_001235	0.83	-0.7
1,380,320	+				-0.2
1,380,320	+				+0.0
1,380,480	+				+0.8
1,380,480	+				+0.3
1,380,533	+				-0.5
1,380,533	+				+1.5
1,380,533	+				-0.7
1,380,533	+				-0.8
1,380,534	-				-0.8
1,380,948	+				-1.4
1,380,948	+				-0.3
1,380,948	+				+2.3
1,380,948	+				+0.2
1,380,948	+				-0.7
1,380,948	+				+1.1
1,380,948	+				+2.3
1,380,948	+				-0.2
1,380,948	+				-2.0
1,380,948	+				+0.0
1,380,948	+				-0.8
1,380,948	+				+0.2
1,380,948	+				-1.7
1,380,948	+				-0.6
1,380,948	+				-0.5
1,380,948	+				-0.9
1,380,948	+				+0.9
1,380,948	+				-0.4
1,380,948	+				-0.5
1,380,948	+				+1.2
1,380,948	+				+0.0
1,380,948	+				-0.8
1,380,948	+				+2.8
1,380,949	-				+0.2
1,380,949	-				+0.3
1,380,949	-				+0.0
1,380,949	-				+1.6
1,380,949	-				+0.3
1,380,949	-				+1.3
1,380,949	-				-0.5
1,380,949	-				+0.0
1,380,949	-				+1.9
1,380,949	-				+1.3
1,380,949	-				-0.5
1,380,949	-				+1.8
1,380,949	-				-1.4
1,380,949	-				-0.2
1,380,949	-				-0.8
1,380,950	+				+2.2
1,380,950	+				-1.6
1,380,950	+				-0.3
1,380,950	+				-1.4
1,380,950	+				+0.3
1,380,950	+				-1.0
1,380,950	+				+0.5
1,380,950	+				+1.4
1,380,950	+				-0.5
1,380,951	-				-0.7
1,380,951	-				-0.1
1,380,951	-				-1.0
1,380,951	-				+1.4
1,380,951	-				-0.1
1,380,951	-				-1.0
1,380,951	-				+0.8
1,380,951	-				+0.3
1,380,951	-				-0.2
1,380,951	-				+1.0
1,380,951	-				-0.5
1,380,951	-				-1.3
1,380,951	-				+0.8
1,380,951	-				+0.9
1,380,951	-				+0.3
1,381,025	+				+0.5
1,381,025	+				-1.2
1,381,026	-				+1.3
1,381,043	+				+3.3
1,381,043	+				-0.2
1,381,085	+				+0.2
1,381,085	+				+0.3
1,381,086	-				+0.9
1,381,097	+				+0.2
1,381,097	+				+0.2
1,381,098	-				-1.3
1,381,235	+		ABIE53_001237	0.18	-0.8
1,381,235	+		ABIE53_001237	0.18	-0.0
1,381,235	+		ABIE53_001237	0.18	-1.8
1,381,236	-		ABIE53_001237	0.19	-0.8
1,381,250	+		ABIE53_001237	0.20	+0.0
1,381,250	+		ABIE53_001237	0.20	-2.3
1,381,250	+		ABIE53_001237	0.20	+0.3
1,381,268	+		ABIE53_001237	0.22	+1.0
1,381,268	+		ABIE53_001237	0.22	-0.8
1,381,269	-		ABIE53_001237	0.22	-2.1
1,381,271	+		ABIE53_001237	0.22	+0.1
1,381,272	-		ABIE53_001237	0.23	+0.2
1,381,272	-		ABIE53_001237	0.23	-0.6
1,381,340	+		ABIE53_001237	0.30	-1.0
1,381,340	+		ABIE53_001237	0.30	-2.1
1,381,340	+		ABIE53_001237	0.30	-0.4
1,381,400	+		ABIE53_001237	0.37	+1.9
1,381,400	+		ABIE53_001237	0.37	-2.6
1,381,401	-		ABIE53_001237	0.37	+0.6
1,381,401	-		ABIE53_001237	0.37	+0.5
1,381,575	+		ABIE53_001237	0.56	+0.6
1,381,575	+		ABIE53_001237	0.56	-0.2
1,381,575	+		ABIE53_001237	0.56	-0.1
1,381,575	+		ABIE53_001237	0.56	-1.0
1,381,575	+		ABIE53_001237	0.56	+3.3
1,381,771	+		ABIE53_001237	0.78	-0.2
1,381,771	+		ABIE53_001237	0.78	-2.1
1,381,771	+		ABIE53_001237	0.78	-1.0
1,381,772	-		ABIE53_001237	0.78	+0.0
1,381,991	+				+0.0
1,382,021	+				-1.5
1,382,021	+				-0.2
1,382,021	+				-0.3
1,382,021	+				-2.4
1,382,021	+				-0.5
1,382,021	+				+1.3
1,382,021	+				+0.2
1,382,022	-				+1.6
1,382,022	-				+1.7
1,382,022	-				+0.1
1,382,022	-				-1.4
1,382,022	-				-2.0
1,382,022	-				-0.2
1,382,022	-				-0.6
1,382,022	-				+0.8
1,382,022	-				+1.9
1,382,022	-				+0.3
1,382,044	-				-1.8
1,382,044	-				-0.5
1,382,137	-		ABIE53_001238	0.15	-0.8
1,382,145	-		ABIE53_001238	0.18	+0.2
1,382,209	+		ABIE53_001238	0.36	+1.3
1,382,209	+		ABIE53_001238	0.36	+2.3
1,382,209	+		ABIE53_001238	0.36	-0.7
1,382,209	+		ABIE53_001238	0.36	-0.2
1,382,209	+		ABIE53_001238	0.36	-0.2
1,382,209	+		ABIE53_001238	0.36	-0.7
1,382,210	-		ABIE53_001238	0.37	-1.6
1,382,210	-		ABIE53_001238	0.37	-0.5
1,382,210	-		ABIE53_001238	0.37	-1.0
1,382,210	-		ABIE53_001238	0.37	+0.8
1,382,236	+		ABIE53_001238	0.44	+1.3
1,382,236	+		ABIE53_001238	0.44	+0.3
1,382,237	-		ABIE53_001238	0.44	-0.8
1,382,283	+		ABIE53_001238	0.58	-0.9
1,382,410	+				-1.1
1,382,410	+				+1.3
1,382,410	+				+1.8
1,382,410	+				-1.5
1,382,410	+				+1.7
1,382,411	-				+0.8
1,382,411	-				-0.8
1,382,411	-				-0.8
1,382,411	-				+0.8
1,382,411	-				-1.0
1,382,411	-				-0.8
1,382,471	+				+1.3
1,382,471	+				+0.2
1,382,471	+				+0.0
1,382,472	-				-0.4
1,382,472	-				-1.0
1,382,472	-				-0.7
1,382,473	+				-0.8
1,382,473	+				+0.6
1,382,473	+				-0.1
1,382,473	+				+0.3
1,382,473	+				-0.2
1,382,473	+				-1.1
1,382,473	+				+0.3
1,382,473	+				-0.7
1,382,473	+				-0.4
1,382,473	+				-0.6
1,382,473	+				-0.8
1,382,474	-				-1.0
1,382,474	-				-0.5
1,382,474	-				+0.0
1,382,474	-				-0.2
1,382,474	-				+0.8
1,382,474	-				-1.6
1,382,474	-				+2.3
1,382,474	-				+0.8
1,382,474	-				-2.0
1,382,518	+				+4.3
1,382,518	+				+2.3
1,382,518	+				+1.6
1,382,518	+				+0.6
1,382,519	-				+0.3
1,382,522	+				+0.9
1,382,522	+				-1.4
1,382,523	-				+1.0
1,382,528	+				-0.6
1,382,529	-				+0.7
1,382,529	-				-0.7
1,382,529	-				+0.3
1,382,529	-				-2.2
1,382,560	+				+0.1
1,382,560	+				-3.0
1,382,561	-				+1.3
1,382,561	-				-0.4
1,382,561	-				-0.2
1,382,561	-				+0.9
1,382,644	+				-0.5
1,382,645	-				-1.1
1,382,645	-				-0.9
1,382,669	-				+1.0
1,382,669	-				+0.3
1,382,669	-				+0.8
1,382,966	-		ABIE53_001239	0.22	-0.2
1,382,966	-		ABIE53_001239	0.22	-0.8
1,382,966	-		ABIE53_001239	0.22	+0.3