Strain Fitness in Rahnella sp. WP5 around EX31_RS19960

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19955 and EX31_RS19960 overlap by 8 nucleotidesEX31_RS19960 and EX31_RS19965 are separated by 11 nucleotidesEX31_RS19965 and EX31_RS19970 are separated by 90 nucleotidesEX31_RS19970 and EX31_RS19975 are separated by 39 nucleotides EX31_RS19955: EX31_RS19955 - carbamoyltransferase HypF, at 620,883 to 623,210 _RS19955 EX31_RS19960: EX31_RS19960 - HoxN/HupN/NixA family nickel/cobalt transporter, at 623,203 to 624,228 _RS19960 EX31_RS19965: EX31_RS19965 - hypothetical protein, at 624,240 to 624,569 _RS19965 EX31_RS19970: EX31_RS19970 - curlin, at 624,660 to 625,136 _RS19970 EX31_RS19975: EX31_RS19975 - curlin, at 625,176 to 625,664 _RS19975 Position (kb) 623 624 625Strain fitness (log2 ratio) -2 -1 0 1 2at 622.242 kb on + strand, within EX31_RS19955at 622.242 kb on + strand, within EX31_RS19955at 622.243 kb on - strand, within EX31_RS19955at 622.243 kb on - strand, within EX31_RS19955at 622.250 kb on + strand, within EX31_RS19955at 622.250 kb on + strand, within EX31_RS19955at 622.250 kb on + strand, within EX31_RS19955at 622.250 kb on + strand, within EX31_RS19955at 622.250 kb on + strand, within EX31_RS19955at 622.250 kb on + strand, within EX31_RS19955at 622.250 kb on + strand, within EX31_RS19955at 622.250 kb on + strand, within EX31_RS19955at 622.250 kb on + strand, within EX31_RS19955at 622.251 kb on - strand, within EX31_RS19955at 622.251 kb on - strand, within EX31_RS19955at 622.251 kb on - strand, within EX31_RS19955at 622.251 kb on - strand, within EX31_RS19955at 622.251 kb on - strand, within EX31_RS19955at 622.251 kb on - strand, within EX31_RS19955at 622.251 kb on - strand, within EX31_RS19955at 622.251 kb on - strand, within EX31_RS19955at 622.287 kb on + strand, within EX31_RS19955at 622.287 kb on + strand, within EX31_RS19955at 622.287 kb on + strand, within EX31_RS19955at 622.287 kb on + strand, within EX31_RS19955at 622.287 kb on + strand, within EX31_RS19955at 622.287 kb on + strand, within EX31_RS19955at 622.287 kb on + strand, within EX31_RS19955at 622.287 kb on + strand, within EX31_RS19955at 622.287 kb on + strand, within EX31_RS19955at 622.287 kb on + strand, within EX31_RS19955at 622.287 kb on + strand, within EX31_RS19955at 622.288 kb on - strand, within EX31_RS19955at 622.288 kb on - strand, within EX31_RS19955at 622.288 kb on - strand, within EX31_RS19955at 622.288 kb on - strand, within EX31_RS19955at 622.290 kb on - strand, within EX31_RS19955at 622.290 kb on - strand, within EX31_RS19955at 622.321 kb on + strand, within EX31_RS19955at 622.321 kb on + strand, within EX31_RS19955at 622.321 kb on + strand, within EX31_RS19955at 622.321 kb on + strand, within EX31_RS19955at 622.321 kb on + strand, within EX31_RS19955at 622.322 kb on - strand, within EX31_RS19955at 622.322 kb on - strand, within EX31_RS19955at 622.322 kb on - strand, within EX31_RS19955at 622.322 kb on - strand, within EX31_RS19955at 622.322 kb on - strand, within EX31_RS19955at 622.355 kb on + strand, within EX31_RS19955at 622.355 kb on + strand, within EX31_RS19955at 622.356 kb on - strand, within EX31_RS19955at 622.356 kb on - strand, within EX31_RS19955at 622.434 kb on + strand, within EX31_RS19955at 622.451 kb on + strand, within EX31_RS19955at 622.481 kb on + strand, within EX31_RS19955at 622.483 kb on + strand, within EX31_RS19955at 622.483 kb on + strand, within EX31_RS19955at 622.483 kb on + strand, within EX31_RS19955at 622.494 kb on + strand, within EX31_RS19955at 622.513 kb on + strand, within EX31_RS19955at 622.513 kb on + strand, within EX31_RS19955at 622.751 kb on + strand, within EX31_RS19955at 622.751 kb on + strand, within EX31_RS19955at 622.752 kb on - strand, within EX31_RS19955at 622.823 kb on + strand, within EX31_RS19955at 622.823 kb on + strand, within EX31_RS19955at 622.857 kb on - strand, within EX31_RS19955at 622.857 kb on - strand, within EX31_RS19955at 622.883 kb on - strand, within EX31_RS19955at 622.987 kb on - strandat 623.065 kb on + strandat 623.065 kb on + strandat 623.066 kb on - strandat 623.066 kb on - strandat 623.073 kb on + strandat 623.073 kb on + strandat 623.073 kb on + strandat 623.073 kb on + strandat 623.073 kb on + strandat 623.073 kb on + strandat 623.073 kb on + strandat 623.073 kb on + strandat 623.074 kb on - strandat 623.074 kb on - strandat 623.074 kb on - strandat 623.074 kb on - strandat 623.074 kb on - strandat 623.077 kb on + strandat 623.077 kb on + strandat 623.078 kb on - strandat 623.186 kb on + strandat 623.208 kb on + strandat 623.347 kb on + strand, within EX31_RS19960at 623.348 kb on - strand, within EX31_RS19960at 623.385 kb on + strand, within EX31_RS19960at 623.385 kb on + strand, within EX31_RS19960at 623.385 kb on + strand, within EX31_RS19960at 623.386 kb on - strand, within EX31_RS19960at 623.386 kb on - strand, within EX31_RS19960at 623.386 kb on - strand, within EX31_RS19960at 623.395 kb on - strand, within EX31_RS19960at 623.554 kb on + strand, within EX31_RS19960at 623.554 kb on + strand, within EX31_RS19960at 623.554 kb on + strand, within EX31_RS19960at 623.743 kb on - strand, within EX31_RS19960at 623.743 kb on - strand, within EX31_RS19960at 623.754 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.770 kb on + strand, within EX31_RS19960at 623.771 kb on - strand, within EX31_RS19960at 623.771 kb on - strand, within EX31_RS19960at 623.771 kb on - strand, within EX31_RS19960at 623.771 kb on - strand, within EX31_RS19960at 623.990 kb on - strand, within EX31_RS19960at 623.990 kb on - strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.992 kb on + strand, within EX31_RS19960at 623.993 kb on - strand, within EX31_RS19960at 623.993 kb on - strand, within EX31_RS19960at 623.993 kb on - strand, within EX31_RS19960at 624.006 kb on + strand, within EX31_RS19960at 624.006 kb on + strand, within EX31_RS19960at 624.083 kb on + strand, within EX31_RS19960at 624.083 kb on + strand, within EX31_RS19960at 624.096 kb on - strand, within EX31_RS19960at 624.126 kb on + strandat 624.190 kb on - strandat 624.208 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.260 kb on + strandat 624.261 kb on - strandat 624.297 kb on - strand, within EX31_RS19965at 624.297 kb on - strand, within EX31_RS19965at 624.308 kb on + strand, within EX31_RS19965at 624.308 kb on + strand, within EX31_RS19965at 624.308 kb on + strand, within EX31_RS19965at 624.308 kb on + strand, within EX31_RS19965at 624.309 kb on - strand, within EX31_RS19965at 624.309 kb on - strand, within EX31_RS19965at 624.309 kb on - strand, within EX31_RS19965at 624.491 kb on + strand, within EX31_RS19965at 624.491 kb on + strand, within EX31_RS19965at 624.491 kb on + strand, within EX31_RS19965at 624.491 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.496 kb on + strand, within EX31_RS19965at 624.497 kb on - strand, within EX31_RS19965at 624.497 kb on - strand, within EX31_RS19965at 624.497 kb on - strand, within EX31_RS19965at 624.519 kb on - strand, within EX31_RS19965at 624.561 kb on + strandat 624.562 kb on - strandat 624.562 kb on - strandat 624.577 kb on - strandat 624.609 kb on + strandat 624.627 kb on + strandat 624.627 kb on + strandat 624.627 kb on + strandat 624.657 kb on + strandat 624.658 kb on - strandat 624.658 kb on - strandat 624.676 kb on + strandat 624.705 kb on - strandat 624.705 kb on - strandat 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.748 kb on + strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.749 kb on - strand, within EX31_RS19970at 624.753 kb on - strand, within EX31_RS19970at 624.753 kb on - strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.820 kb on + strand, within EX31_RS19970at 624.821 kb on - strand, within EX31_RS19970at 624.821 kb on - strand, within EX31_RS19970at 624.821 kb on - strand, within EX31_RS19970at 624.834 kb on + strand, within EX31_RS19970at 624.834 kb on + strand, within EX31_RS19970at 624.881 kb on + strand, within EX31_RS19970at 624.889 kb on + strand, within EX31_RS19970at 624.971 kb on - strand, within EX31_RS19970at 624.971 kb on - strand, within EX31_RS19970at 625.037 kb on + strand, within EX31_RS19970at 625.101 kb on + strandat 625.101 kb on + strandat 625.102 kb on - strandat 625.102 kb on - strandat 625.155 kb on + strandat 625.155 kb on + strandat 625.156 kb on - strandat 625.156 kb on - strandat 625.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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622,242 + EX31_RS19955 0.58 -0.5
622,242 + EX31_RS19955 0.58 +1.6
622,243 - EX31_RS19955 0.58 +0.2
622,243 - EX31_RS19955 0.58 +0.7
622,250 + EX31_RS19955 0.59 +0.2
622,250 + EX31_RS19955 0.59 -0.8
622,250 + EX31_RS19955 0.59 +0.9
622,250 + EX31_RS19955 0.59 +0.1
622,250 + EX31_RS19955 0.59 +0.6
622,250 + EX31_RS19955 0.59 +1.6
622,250 + EX31_RS19955 0.59 -0.1
622,250 + EX31_RS19955 0.59 -0.2
622,250 + EX31_RS19955 0.59 -0.2
622,251 - EX31_RS19955 0.59 +0.7
622,251 - EX31_RS19955 0.59 -0.4
622,251 - EX31_RS19955 0.59 -0.8
622,251 - EX31_RS19955 0.59 +1.1
622,251 - EX31_RS19955 0.59 -0.3
622,251 - EX31_RS19955 0.59 -1.1
622,251 - EX31_RS19955 0.59 -0.4
622,251 - EX31_RS19955 0.59 +0.6
622,287 + EX31_RS19955 0.60 -1.2
622,287 + EX31_RS19955 0.60 -0.1
622,287 + EX31_RS19955 0.60 +0.2
622,287 + EX31_RS19955 0.60 -0.2
622,287 + EX31_RS19955 0.60 -1.0
622,287 + EX31_RS19955 0.60 -0.1
622,287 + EX31_RS19955 0.60 +0.1
622,287 + EX31_RS19955 0.60 +0.4
622,287 + EX31_RS19955 0.60 -1.6
622,287 + EX31_RS19955 0.60 +1.4
622,287 + EX31_RS19955 0.60 +0.5
622,288 - EX31_RS19955 0.60 +0.4
622,288 - EX31_RS19955 0.60 -1.7
622,288 - EX31_RS19955 0.60 +0.3
622,288 - EX31_RS19955 0.60 -1.9
622,290 - EX31_RS19955 0.60 +2.1
622,290 - EX31_RS19955 0.60 -2.3
622,321 + EX31_RS19955 0.62 -0.3
622,321 + EX31_RS19955 0.62 +0.8
622,321 + EX31_RS19955 0.62 +0.1
622,321 + EX31_RS19955 0.62 -0.6
622,321 + EX31_RS19955 0.62 -1.2
622,322 - EX31_RS19955 0.62 -0.9
622,322 - EX31_RS19955 0.62 -0.9
622,322 - EX31_RS19955 0.62 +1.1
622,322 - EX31_RS19955 0.62 -1.1
622,322 - EX31_RS19955 0.62 +0.3
622,355 + EX31_RS19955 0.63 -0.1
622,355 + EX31_RS19955 0.63 -0.0
622,356 - EX31_RS19955 0.63 -1.6
622,356 - EX31_RS19955 0.63 -0.0
622,434 + EX31_RS19955 0.67 +0.7
622,451 + EX31_RS19955 0.67 -0.3
622,481 + EX31_RS19955 0.69 +0.0
622,483 + EX31_RS19955 0.69 -1.6
622,483 + EX31_RS19955 0.69 +0.1
622,483 + EX31_RS19955 0.69 +0.3
622,494 + EX31_RS19955 0.69 +0.3
622,513 + EX31_RS19955 0.70 -0.2
622,513 + EX31_RS19955 0.70 -0.5
622,751 + EX31_RS19955 0.80 +1.1
622,751 + EX31_RS19955 0.80 +0.6
622,752 - EX31_RS19955 0.80 +0.0
622,823 + EX31_RS19955 0.83 -1.4
622,823 + EX31_RS19955 0.83 -0.1
622,857 - EX31_RS19955 0.85 +0.8
622,857 - EX31_RS19955 0.85 +1.1
622,883 - EX31_RS19955 0.86 +1.6
622,987 - +0.8
623,065 + +0.2
623,065 + -2.4
623,066 - -0.8
623,066 - +0.7
623,073 + -0.3
623,073 + +0.6
623,073 + +0.1
623,073 + +0.2
623,073 + +0.6
623,073 + -0.0
623,073 + -1.1
623,073 + -0.0
623,074 - -0.7
623,074 - +1.4
623,074 - +0.3
623,074 - -1.0
623,074 - +0.2
623,077 + -0.6
623,077 + -0.0
623,078 - +0.0
623,186 + +0.7
623,208 + -0.9
623,347 + EX31_RS19960 0.14 +0.4
623,348 - EX31_RS19960 0.14 +0.1
623,385 + EX31_RS19960 0.18 +0.1
623,385 + EX31_RS19960 0.18 +0.3
623,385 + EX31_RS19960 0.18 +1.6
623,386 - EX31_RS19960 0.18 +0.9
623,386 - EX31_RS19960 0.18 -0.1
623,386 - EX31_RS19960 0.18 +0.4
623,395 - EX31_RS19960 0.19 +0.0
623,554 + EX31_RS19960 0.34 +1.3
623,554 + EX31_RS19960 0.34 +0.4
623,554 + EX31_RS19960 0.34 -0.8
623,743 - EX31_RS19960 0.53 +0.4
623,743 - EX31_RS19960 0.53 +0.7
623,754 + EX31_RS19960 0.54 -0.2
623,770 + EX31_RS19960 0.55 -0.3
623,770 + EX31_RS19960 0.55 +0.8
623,770 + EX31_RS19960 0.55 +0.2
623,770 + EX31_RS19960 0.55 -0.1
623,770 + EX31_RS19960 0.55 +0.6
623,770 + EX31_RS19960 0.55 +0.4
623,770 + EX31_RS19960 0.55 +1.4
623,770 + EX31_RS19960 0.55 -0.6
623,770 + EX31_RS19960 0.55 +0.6
623,771 - EX31_RS19960 0.55 -0.4
623,771 - EX31_RS19960 0.55 +1.0
623,771 - EX31_RS19960 0.55 +1.4
623,771 - EX31_RS19960 0.55 -0.0
623,990 - EX31_RS19960 0.77 +0.3
623,990 - EX31_RS19960 0.77 +0.7
623,992 + EX31_RS19960 0.77 +0.6
623,992 + EX31_RS19960 0.77 -1.1
623,992 + EX31_RS19960 0.77 -1.3
623,992 + EX31_RS19960 0.77 -0.8
623,992 + EX31_RS19960 0.77 -0.1
623,992 + EX31_RS19960 0.77 -0.2
623,992 + EX31_RS19960 0.77 +1.1
623,993 - EX31_RS19960 0.77 -0.2
623,993 - EX31_RS19960 0.77 +1.0
623,993 - EX31_RS19960 0.77 -0.3
624,006 + EX31_RS19960 0.78 -1.3
624,006 + EX31_RS19960 0.78 -1.8
624,083 + EX31_RS19960 0.86 -1.5
624,083 + EX31_RS19960 0.86 -1.7
624,096 - EX31_RS19960 0.87 -2.1
624,126 + -0.2
624,190 - -0.8
624,208 + +0.9
624,260 + +0.0
624,260 + -0.8
624,260 + -0.4
624,260 + -0.5
624,260 + -2.0
624,260 + +0.6
624,261 - -1.2
624,297 - EX31_RS19965 0.17 -0.4
624,297 - EX31_RS19965 0.17 -0.1
624,308 + EX31_RS19965 0.21 +1.0
624,308 + EX31_RS19965 0.21 -0.4
624,308 + EX31_RS19965 0.21 -1.5
624,308 + EX31_RS19965 0.21 -0.5
624,309 - EX31_RS19965 0.21 +1.6
624,309 - EX31_RS19965 0.21 -0.8
624,309 - EX31_RS19965 0.21 +1.4
624,491 + EX31_RS19965 0.76 -0.5
624,491 + EX31_RS19965 0.76 +0.5
624,491 + EX31_RS19965 0.76 -0.3
624,491 + EX31_RS19965 0.76 +0.2
624,496 + EX31_RS19965 0.78 +1.6
624,496 + EX31_RS19965 0.78 +0.0
624,496 + EX31_RS19965 0.78 +0.1
624,496 + EX31_RS19965 0.78 -1.4
624,496 + EX31_RS19965 0.78 +0.8
624,496 + EX31_RS19965 0.78 +0.4
624,497 - EX31_RS19965 0.78 -0.6
624,497 - EX31_RS19965 0.78 -1.1
624,497 - EX31_RS19965 0.78 -0.3
624,519 - EX31_RS19965 0.85 +1.6
624,561 + -1.3
624,562 - +0.5
624,562 - +0.1
624,577 - +0.6
624,609 + -0.2
624,627 + -0.6
624,627 + -0.5
624,627 + +0.7
624,657 + +0.2
624,658 - -0.3
624,658 - -0.7
624,676 + +0.4
624,705 - -0.3
624,705 - +0.7
624,748 + EX31_RS19970 0.18 +1.0
624,748 + EX31_RS19970 0.18 -0.3
624,748 + EX31_RS19970 0.18 -0.7
624,748 + EX31_RS19970 0.18 -0.3
624,748 + EX31_RS19970 0.18 +1.0
624,748 + EX31_RS19970 0.18 -0.1
624,748 + EX31_RS19970 0.18 -0.0
624,748 + EX31_RS19970 0.18 -1.4
624,748 + EX31_RS19970 0.18 +1.1
624,748 + EX31_RS19970 0.18 -0.1
624,749 - EX31_RS19970 0.19 -1.7
624,749 - EX31_RS19970 0.19 -2.0
624,749 - EX31_RS19970 0.19 +0.2
624,749 - EX31_RS19970 0.19 -1.5
624,749 - EX31_RS19970 0.19 +0.1
624,749 - EX31_RS19970 0.19 +0.1
624,749 - EX31_RS19970 0.19 +0.1
624,749 - EX31_RS19970 0.19 -0.5
624,749 - EX31_RS19970 0.19 -0.5
624,749 - EX31_RS19970 0.19 -0.3
624,749 - EX31_RS19970 0.19 +1.3
624,749 - EX31_RS19970 0.19 -0.3
624,749 - EX31_RS19970 0.19 -1.2
624,749 - EX31_RS19970 0.19 -0.1
624,749 - EX31_RS19970 0.19 +0.1
624,749 - EX31_RS19970 0.19 -0.5
624,749 - EX31_RS19970 0.19 -2.4
624,753 - EX31_RS19970 0.19 +0.5
624,753 - EX31_RS19970 0.19 -0.4
624,820 + EX31_RS19970 0.34 +0.7
624,820 + EX31_RS19970 0.34 -0.6
624,820 + EX31_RS19970 0.34 +0.1
624,820 + EX31_RS19970 0.34 -0.2
624,820 + EX31_RS19970 0.34 -0.2
624,820 + EX31_RS19970 0.34 -1.0
624,820 + EX31_RS19970 0.34 +0.5
624,821 - EX31_RS19970 0.34 -0.3
624,821 - EX31_RS19970 0.34 +0.4
624,821 - EX31_RS19970 0.34 -0.3
624,834 + EX31_RS19970 0.36 -0.2
624,834 + EX31_RS19970 0.36 -0.3
624,881 + EX31_RS19970 0.46 +0.3
624,889 + EX31_RS19970 0.48 +0.8
624,971 - EX31_RS19970 0.65 +1.0
624,971 - EX31_RS19970 0.65 +0.1
625,037 + EX31_RS19970 0.79 +1.1
625,101 + +0.0
625,101 + -0.1
625,102 - +0.8
625,102 - +0.6
625,155 + +1.2
625,155 + +0.6
625,156 - -2.0
625,156 - +0.9
625,156 - -0.2

Or see this region's nucleotide sequence