Experiment: Ammonium chloride (N); ShewMM media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18910 and EX31_RS18915 are separated by 414 nucleotides EX31_RS18915 and EX31_RS18920 are separated by 622 nucleotides
EX31_RS18910: EX31_RS18910 - hypothetical protein, at 367,570 to 368,247
_RS18910
EX31_RS18915: EX31_RS18915 - DNA starvation/stationary phase protection protein Dps, at 368,662 to 369,165
_RS18915
EX31_RS18920: EX31_RS18920 - ABC transporter permease, at 369,788 to 370,564
_RS18920
Position (kb) 368
369
370 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 367.782 kb on + strand, within EX31_RS18910 at 367.782 kb on + strand, within EX31_RS18910 at 367.805 kb on + strand, within EX31_RS18910 at 367.806 kb on - strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.840 kb on + strand, within EX31_RS18910 at 367.841 kb on - strand, within EX31_RS18910 at 367.841 kb on - strand, within EX31_RS18910 at 367.841 kb on - strand, within EX31_RS18910 at 367.841 kb on - strand, within EX31_RS18910 at 367.841 kb on - strand, within EX31_RS18910 at 367.841 kb on - strand, within EX31_RS18910 at 367.842 kb on + strand, within EX31_RS18910 at 367.842 kb on + strand, within EX31_RS18910 at 367.843 kb on - strand, within EX31_RS18910 at 367.843 kb on - strand, within EX31_RS18910 at 367.843 kb on - strand, within EX31_RS18910 at 367.843 kb on - strand, within EX31_RS18910 at 368.157 kb on + strand, within EX31_RS18910 at 368.158 kb on - strand, within EX31_RS18910 at 368.169 kb on - strand, within EX31_RS18910 at 368.224 kb on + strand at 368.224 kb on + strand at 368.225 kb on - strand at 368.225 kb on - strand at 368.292 kb on + strand at 368.292 kb on + strand at 368.303 kb on + strand at 368.304 kb on - strand at 368.304 kb on - strand at 368.388 kb on - strand at 368.388 kb on - strand at 368.388 kb on - strand at 368.388 kb on - strand at 368.399 kb on + strand at 368.426 kb on + strand at 368.435 kb on + strand at 368.435 kb on + strand at 368.494 kb on - strand at 368.507 kb on - strand at 368.507 kb on - strand at 368.507 kb on - strand at 368.535 kb on + strand at 368.537 kb on + strand at 368.537 kb on + strand at 368.538 kb on - strand at 368.590 kb on + strand at 368.597 kb on - strand at 368.611 kb on + strand at 368.619 kb on - strand at 368.623 kb on + strand at 368.623 kb on + strand at 368.655 kb on + strand at 368.655 kb on + strand at 368.655 kb on + strand at 368.655 kb on + strand at 368.656 kb on - strand at 368.659 kb on + strand at 368.659 kb on + strand at 368.659 kb on + strand at 368.659 kb on + strand at 368.659 kb on + strand at 368.659 kb on + strand at 368.660 kb on - strand at 368.660 kb on - strand at 368.660 kb on - strand at 368.661 kb on + strand at 368.662 kb on - strand at 368.708 kb on - strand at 368.708 kb on - strand at 368.723 kb on + strand, within EX31_RS18915 at 368.745 kb on + strand, within EX31_RS18915 at 368.748 kb on + strand, within EX31_RS18915 at 368.748 kb on + strand, within EX31_RS18915 at 368.748 kb on + strand, within EX31_RS18915 at 368.748 kb on + strand, within EX31_RS18915 at 368.749 kb on - strand, within EX31_RS18915 at 368.779 kb on + strand, within EX31_RS18915 at 368.779 kb on + strand, within EX31_RS18915 at 368.839 kb on - strand, within EX31_RS18915 at 368.921 kb on + strand, within EX31_RS18915 at 368.921 kb on + strand, within EX31_RS18915 at 368.921 kb on + strand, within EX31_RS18915 at 368.922 kb on - strand, within EX31_RS18915 at 368.922 kb on - strand, within EX31_RS18915 at 368.922 kb on - strand, within EX31_RS18915 at 368.962 kb on - strand, within EX31_RS18915 at 369.034 kb on + strand, within EX31_RS18915 at 369.035 kb on - strand, within EX31_RS18915 at 369.078 kb on - strand, within EX31_RS18915 at 369.099 kb on + strand, within EX31_RS18915 at 369.156 kb on + strand at 369.156 kb on + strand at 369.157 kb on - strand at 369.164 kb on - strand at 369.190 kb on + strand at 369.190 kb on + strand at 369.191 kb on - strand at 369.211 kb on + strand at 369.266 kb on + strand at 369.267 kb on - strand at 369.267 kb on - strand at 369.267 kb on - strand at 369.296 kb on + strand at 369.297 kb on - strand at 369.297 kb on - strand at 369.322 kb on - strand at 369.322 kb on - strand at 369.327 kb on + strand at 369.328 kb on - strand at 369.328 kb on - strand at 369.352 kb on + strand at 369.353 kb on - strand at 369.422 kb on - strand at 369.488 kb on - strand at 369.510 kb on + strand at 369.510 kb on + strand at 369.587 kb on + strand at 369.653 kb on + strand at 369.653 kb on + strand at 369.781 kb on + strand at 369.796 kb on + strand at 369.797 kb on - strand at 369.804 kb on + strand at 369.804 kb on + strand at 369.805 kb on - strand at 369.810 kb on + strand at 369.810 kb on + strand at 369.865 kb on + strand at 369.869 kb on + strand, within EX31_RS18920 at 369.869 kb on + strand, within EX31_RS18920 at 369.870 kb on - strand, within EX31_RS18920 at 369.881 kb on + strand, within EX31_RS18920 at 369.881 kb on + strand, within EX31_RS18920 at 370.024 kb on + strand, within EX31_RS18920 at 370.026 kb on + strand, within EX31_RS18920 at 370.026 kb on + strand, within EX31_RS18920 at 370.026 kb on + strand, within EX31_RS18920 at 370.108 kb on - strand, within EX31_RS18920
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking remove 367,782 + EX31_RS18910 0.31 +0.5 367,782 + EX31_RS18910 0.31 -1.2 367,805 + EX31_RS18910 0.35 +0.6 367,806 - EX31_RS18910 0.35 +1.4 367,840 + EX31_RS18910 0.40 +0.2 367,840 + EX31_RS18910 0.40 +0.4 367,840 + EX31_RS18910 0.40 -0.3 367,840 + EX31_RS18910 0.40 +0.2 367,840 + EX31_RS18910 0.40 -0.8 367,840 + EX31_RS18910 0.40 +0.6 367,840 + EX31_RS18910 0.40 +0.6 367,840 + EX31_RS18910 0.40 +0.2 367,840 + EX31_RS18910 0.40 +0.1 367,840 + EX31_RS18910 0.40 +0.3 367,840 + EX31_RS18910 0.40 -0.8 367,840 + EX31_RS18910 0.40 +1.2 367,841 - EX31_RS18910 0.40 +0.5 367,841 - EX31_RS18910 0.40 +0.3 367,841 - EX31_RS18910 0.40 +0.5 367,841 - EX31_RS18910 0.40 -0.4 367,841 - EX31_RS18910 0.40 +0.6 367,841 - EX31_RS18910 0.40 +1.3 367,842 + EX31_RS18910 0.40 +0.8 367,842 + EX31_RS18910 0.40 -0.5 367,843 - EX31_RS18910 0.40 -0.7 367,843 - EX31_RS18910 0.40 -0.2 367,843 - EX31_RS18910 0.40 +1.4 367,843 - EX31_RS18910 0.40 -0.2 368,157 + EX31_RS18910 0.87 +0.2 368,158 - EX31_RS18910 0.87 -0.1 368,169 - EX31_RS18910 0.88 -0.7 368,224 + +0.8 368,224 + -1.4 368,225 - +0.9 368,225 - -0.6 368,292 + +0.6 368,292 + +0.9 368,303 + -1.0 368,304 - -0.2 368,304 - +0.7 368,388 - +0.4 368,388 - +0.1 368,388 - -0.7 368,388 - -1.2 368,399 + +0.5 368,426 + -0.6 368,435 + -1.1 368,435 + +1.4 368,494 - +1.2 368,507 - -2.1 368,507 - +0.6 368,507 - -0.0 368,535 + -1.3 368,537 + -1.9 368,537 + -0.2 368,538 - +1.6 368,590 + +0.5 368,597 - +1.0 368,611 + -0.2 368,619 - +0.9 368,623 + +1.0 368,623 + +0.3 368,655 + +1.2 368,655 + +1.0 368,655 + +0.1 368,655 + +0.6 368,656 - +0.5 368,659 + -0.6 368,659 + -0.8 368,659 + +0.4 368,659 + -1.2 368,659 + +0.6 368,659 + -0.8 368,660 - +0.7 368,660 - -0.5 368,660 - +0.6 368,661 + +2.4 368,662 - -2.4 368,708 - -2.0 368,708 - -0.1 368,723 + EX31_RS18915 0.12 +0.4 368,745 + EX31_RS18915 0.16 -0.1 368,748 + EX31_RS18915 0.17 -0.1 368,748 + EX31_RS18915 0.17 +0.6 368,748 + EX31_RS18915 0.17 -0.2 368,748 + EX31_RS18915 0.17 +0.2 368,749 - EX31_RS18915 0.17 -0.2 368,779 + EX31_RS18915 0.23 +1.2 368,779 + EX31_RS18915 0.23 +0.0 368,839 - EX31_RS18915 0.35 +0.6 368,921 + EX31_RS18915 0.51 -0.3 368,921 + EX31_RS18915 0.51 +1.3 368,921 + EX31_RS18915 0.51 -1.5 368,922 - EX31_RS18915 0.52 -0.9 368,922 - EX31_RS18915 0.52 +1.1 368,922 - EX31_RS18915 0.52 +1.6 368,962 - EX31_RS18915 0.60 -1.0 369,034 + EX31_RS18915 0.74 -0.1 369,035 - EX31_RS18915 0.74 -1.3 369,078 - EX31_RS18915 0.83 -0.6 369,099 + EX31_RS18915 0.87 -1.5 369,156 + +0.8 369,156 + +0.9 369,157 - -0.0 369,164 - +0.9 369,190 + +0.9 369,190 + +0.2 369,191 - +2.9 369,211 + +0.3 369,266 + -0.5 369,267 - +0.0 369,267 - -1.9 369,267 - +1.2 369,296 + -0.8 369,297 - +0.3 369,297 - -1.2 369,322 - +1.6 369,322 - +0.3 369,327 + +0.4 369,328 - -0.2 369,328 - -0.4 369,352 + +1.0 369,353 - -0.3 369,422 - +0.7 369,488 - -0.0 369,510 + +1.2 369,510 + -0.7 369,587 + -0.5 369,653 + -0.7 369,653 + -0.7 369,781 + +0.4 369,796 + -1.4 369,797 - +0.1 369,804 + -1.3 369,804 + +1.2 369,805 - -1.6 369,810 + -1.1 369,810 + +2.2 369,865 + -0.6 369,869 + EX31_RS18920 0.10 -1.9 369,869 + EX31_RS18920 0.10 +1.3 369,870 - EX31_RS18920 0.11 -1.8 369,881 + EX31_RS18920 0.12 -0.7 369,881 + EX31_RS18920 0.12 +0.8 370,024 + EX31_RS18920 0.30 +0.5 370,026 + EX31_RS18920 0.31 +0.5 370,026 + EX31_RS18920 0.31 +0.2 370,026 + EX31_RS18920 0.31 -0.3 370,108 - EX31_RS18920 0.41 +1.3
Or see this region's nucleotide sequence