Strain Fitness in Rahnella sp. WP5 around EX31_RS13855

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13845 and EX31_RS13850 are separated by 78 nucleotidesEX31_RS13850 and EX31_RS13855 are separated by 254 nucleotidesEX31_RS13855 and EX31_RS13860 are separated by 221 nucleotidesEX31_RS13860 and EX31_RS13865 are separated by 29 nucleotidesEX31_RS13865 and EX31_RS13870 are separated by 547 nucleotides EX31_RS13845: EX31_RS13845 - cyclopropane fatty acyl phospholipid synthase, at 28,498 to 29,649 _RS13845 EX31_RS13850: EX31_RS13850 - riboflavin synthase, at 29,728 to 30,381 _RS13850 EX31_RS13855: EX31_RS13855 - MATE family efflux transporter, at 30,636 to 32,009 _RS13855 EX31_RS13860: EX31_RS13860 - tRNA-Val, at 32,231 to 32,307 _RS13860 EX31_RS13865: EX31_RS13865 - tRNA-Val, at 32,337 to 32,413 _RS13865 EX31_RS13870: EX31_RS13870 - pyruvate kinase PykF, at 32,961 to 34,373 _RS13870 Position (kb) 30 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 29.640 kb on - strandat 29.651 kb on - strandat 29.656 kb on + strandat 29.656 kb on + strandat 29.656 kb on + strandat 29.657 kb on - strandat 29.663 kb on + strandat 29.667 kb on + strandat 29.668 kb on - strandat 29.725 kb on - strandat 29.729 kb on + strandat 29.730 kb on - strandat 29.730 kb on - strandat 29.740 kb on - strandat 29.789 kb on - strandat 30.415 kb on - strandat 30.415 kb on - strandat 30.448 kb on - strandat 30.448 kb on - strandat 30.478 kb on + strandat 30.479 kb on - strandat 30.479 kb on - strandat 30.479 kb on - strandat 30.514 kb on + strandat 30.515 kb on - strandat 30.515 kb on - strandat 30.552 kb on - strandat 30.552 kb on - strandat 30.552 kb on - strandat 30.568 kb on + strandat 30.568 kb on + strandat 30.569 kb on - strandat 30.569 kb on - strandat 30.612 kb on - strandat 30.613 kb on + strandat 30.632 kb on - strandat 30.632 kb on - strandat 30.645 kb on + strandat 30.645 kb on + strandat 30.646 kb on - strandat 30.736 kb on + strandat 30.736 kb on + strandat 30.737 kb on - strandat 30.826 kb on + strand, within EX31_RS13855at 30.859 kb on + strand, within EX31_RS13855at 30.859 kb on + strand, within EX31_RS13855at 30.859 kb on + strand, within EX31_RS13855at 30.968 kb on + strand, within EX31_RS13855at 30.969 kb on - strand, within EX31_RS13855at 30.987 kb on - strand, within EX31_RS13855at 30.987 kb on - strand, within EX31_RS13855at 30.987 kb on - strand, within EX31_RS13855at 30.989 kb on + strand, within EX31_RS13855at 30.989 kb on + strand, within EX31_RS13855at 31.037 kb on + strand, within EX31_RS13855at 31.037 kb on + strand, within EX31_RS13855at 31.037 kb on + strand, within EX31_RS13855at 31.037 kb on + strand, within EX31_RS13855at 31.037 kb on + strand, within EX31_RS13855at 31.037 kb on + strand, within EX31_RS13855at 31.038 kb on - strand, within EX31_RS13855at 31.038 kb on - strand, within EX31_RS13855at 31.038 kb on - strand, within EX31_RS13855at 31.038 kb on - strand, within EX31_RS13855at 31.060 kb on + strand, within EX31_RS13855at 31.060 kb on + strand, within EX31_RS13855at 31.060 kb on + strand, within EX31_RS13855at 31.170 kb on - strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.234 kb on + strand, within EX31_RS13855at 31.235 kb on - strand, within EX31_RS13855at 31.236 kb on + strand, within EX31_RS13855at 31.237 kb on - strand, within EX31_RS13855at 31.266 kb on + strand, within EX31_RS13855at 31.270 kb on + strand, within EX31_RS13855at 31.270 kb on + strand, within EX31_RS13855at 31.271 kb on - strand, within EX31_RS13855at 31.271 kb on - strand, within EX31_RS13855at 31.508 kb on - strand, within EX31_RS13855at 31.581 kb on + strand, within EX31_RS13855at 31.581 kb on + strand, within EX31_RS13855at 31.581 kb on + strand, within EX31_RS13855at 31.582 kb on - strand, within EX31_RS13855at 31.583 kb on + strand, within EX31_RS13855at 31.583 kb on + strand, within EX31_RS13855at 31.584 kb on - strand, within EX31_RS13855at 31.584 kb on - strand, within EX31_RS13855at 31.584 kb on - strand, within EX31_RS13855at 31.589 kb on + strand, within EX31_RS13855at 31.591 kb on + strand, within EX31_RS13855at 31.591 kb on + strand, within EX31_RS13855at 31.591 kb on + strand, within EX31_RS13855at 31.591 kb on + strand, within EX31_RS13855at 31.592 kb on - strand, within EX31_RS13855at 31.592 kb on - strand, within EX31_RS13855at 31.592 kb on - strand, within EX31_RS13855at 31.592 kb on - strand, within EX31_RS13855at 31.604 kb on + strand, within EX31_RS13855at 31.665 kb on + strand, within EX31_RS13855at 31.668 kb on - strand, within EX31_RS13855at 31.776 kb on + strand, within EX31_RS13855at 31.777 kb on - strand, within EX31_RS13855at 31.778 kb on + strand, within EX31_RS13855at 31.779 kb on - strand, within EX31_RS13855at 31.779 kb on - strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.800 kb on + strand, within EX31_RS13855at 31.801 kb on - strand, within EX31_RS13855at 31.801 kb on - strand, within EX31_RS13855at 31.801 kb on - strand, within EX31_RS13855at 31.801 kb on - strand, within EX31_RS13855at 31.802 kb on + strand, within EX31_RS13855at 31.803 kb on - strand, within EX31_RS13855at 31.805 kb on + strand, within EX31_RS13855at 31.805 kb on + strand, within EX31_RS13855at 31.805 kb on + strand, within EX31_RS13855at 31.806 kb on - strand, within EX31_RS13855at 31.818 kb on + strand, within EX31_RS13855at 31.845 kb on + strand, within EX31_RS13855at 31.980 kb on + strandat 32.083 kb on + strandat 32.083 kb on + strandat 32.111 kb on + strandat 32.111 kb on + strandat 32.111 kb on + strandat 32.112 kb on - strandat 32.112 kb on - strandat 32.112 kb on - strandat 32.112 kb on - strandat 32.112 kb on - strandat 32.133 kb on + strandat 32.134 kb on - strandat 32.238 kb on + strandat 32.238 kb on + strandat 32.315 kb on + strandat 32.315 kb on + strandat 32.331 kb on + strandat 32.331 kb on + strandat 32.331 kb on + strandat 32.331 kb on + strandat 32.331 kb on + strandat 32.544 kb on - strandat 32.701 kb on + strandat 32.823 kb on + strandat 32.823 kb on + strandat 32.826 kb on + strandat 32.850 kb on + strandat 32.856 kb on + strandat 32.856 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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29,640 - +0.5
29,651 - +0.1
29,656 + +0.2
29,656 + -0.5
29,656 + -0.5
29,657 - +0.0
29,663 + +1.5
29,667 + +0.1
29,668 - +1.2
29,725 - +0.9
29,729 + +1.1
29,730 - -1.2
29,730 - +0.8
29,740 - -0.2
29,789 - +0.0
30,415 - +0.0
30,415 - -0.6
30,448 - +0.3
30,448 - +1.2
30,478 + +1.2
30,479 - +0.2
30,479 - +1.8
30,479 - +0.5
30,514 + +0.2
30,515 - -0.2
30,515 - -1.2
30,552 - -0.3
30,552 - -0.9
30,552 - -0.1
30,568 + +0.2
30,568 + +2.4
30,569 - +0.1
30,569 - +1.8
30,612 - +1.3
30,613 + +0.8
30,632 - -0.6
30,632 - +0.2
30,645 + +1.5
30,645 + +1.1
30,646 - +1.0
30,736 + -0.3
30,736 + -0.9
30,737 - -1.5
30,826 + EX31_RS13855 0.14 +0.8
30,859 + EX31_RS13855 0.16 -0.9
30,859 + EX31_RS13855 0.16 +0.1
30,859 + EX31_RS13855 0.16 +0.4
30,968 + EX31_RS13855 0.24 +0.8
30,969 - EX31_RS13855 0.24 +0.5
30,987 - EX31_RS13855 0.26 +3.8
30,987 - EX31_RS13855 0.26 -0.1
30,987 - EX31_RS13855 0.26 +0.2
30,989 + EX31_RS13855 0.26 -1.2
30,989 + EX31_RS13855 0.26 +0.0
31,037 + EX31_RS13855 0.29 +0.8
31,037 + EX31_RS13855 0.29 -0.8
31,037 + EX31_RS13855 0.29 -0.2
31,037 + EX31_RS13855 0.29 -1.5
31,037 + EX31_RS13855 0.29 +0.2
31,037 + EX31_RS13855 0.29 +1.1
31,038 - EX31_RS13855 0.29 +1.8
31,038 - EX31_RS13855 0.29 -0.3
31,038 - EX31_RS13855 0.29 +0.1
31,038 - EX31_RS13855 0.29 -1.0
31,060 + EX31_RS13855 0.31 +0.5
31,060 + EX31_RS13855 0.31 -0.6
31,060 + EX31_RS13855 0.31 +0.8
31,170 - EX31_RS13855 0.39 -1.2
31,234 + EX31_RS13855 0.44 +0.1
31,234 + EX31_RS13855 0.44 +1.2
31,234 + EX31_RS13855 0.44 +1.2
31,234 + EX31_RS13855 0.44 -0.2
31,234 + EX31_RS13855 0.44 +1.3
31,234 + EX31_RS13855 0.44 -0.6
31,234 + EX31_RS13855 0.44 +0.5
31,234 + EX31_RS13855 0.44 +0.5
31,235 - EX31_RS13855 0.44 -1.0
31,236 + EX31_RS13855 0.44 +0.8
31,237 - EX31_RS13855 0.44 -0.2
31,266 + EX31_RS13855 0.46 -0.4
31,270 + EX31_RS13855 0.46 +0.7
31,270 + EX31_RS13855 0.46 +0.1
31,271 - EX31_RS13855 0.46 +0.9
31,271 - EX31_RS13855 0.46 -0.0
31,508 - EX31_RS13855 0.63 -0.3
31,581 + EX31_RS13855 0.69 +0.7
31,581 + EX31_RS13855 0.69 -1.0
31,581 + EX31_RS13855 0.69 +1.2
31,582 - EX31_RS13855 0.69 +1.1
31,583 + EX31_RS13855 0.69 +2.0
31,583 + EX31_RS13855 0.69 -1.0
31,584 - EX31_RS13855 0.69 -1.8
31,584 - EX31_RS13855 0.69 -1.0
31,584 - EX31_RS13855 0.69 +0.8
31,589 + EX31_RS13855 0.69 +0.8
31,591 + EX31_RS13855 0.70 -0.3
31,591 + EX31_RS13855 0.70 -0.2
31,591 + EX31_RS13855 0.70 -0.7
31,591 + EX31_RS13855 0.70 +2.8
31,592 - EX31_RS13855 0.70 +0.9
31,592 - EX31_RS13855 0.70 -1.5
31,592 - EX31_RS13855 0.70 +0.0
31,592 - EX31_RS13855 0.70 +1.8
31,604 + EX31_RS13855 0.70 +1.5
31,665 + EX31_RS13855 0.75 -0.1
31,668 - EX31_RS13855 0.75 -0.6
31,776 + EX31_RS13855 0.83 +0.4
31,777 - EX31_RS13855 0.83 -0.8
31,778 + EX31_RS13855 0.83 -0.5
31,779 - EX31_RS13855 0.83 +1.0
31,779 - EX31_RS13855 0.83 -0.3
31,800 + EX31_RS13855 0.85 -0.1
31,800 + EX31_RS13855 0.85 +1.1
31,800 + EX31_RS13855 0.85 -1.0
31,800 + EX31_RS13855 0.85 +1.0
31,800 + EX31_RS13855 0.85 +2.0
31,800 + EX31_RS13855 0.85 +0.7
31,800 + EX31_RS13855 0.85 +1.5
31,800 + EX31_RS13855 0.85 +0.8
31,800 + EX31_RS13855 0.85 +1.8
31,800 + EX31_RS13855 0.85 +1.5
31,800 + EX31_RS13855 0.85 -0.9
31,801 - EX31_RS13855 0.85 +0.4
31,801 - EX31_RS13855 0.85 +1.1
31,801 - EX31_RS13855 0.85 +1.2
31,801 - EX31_RS13855 0.85 +0.0
31,802 + EX31_RS13855 0.85 -0.1
31,803 - EX31_RS13855 0.85 +1.1
31,805 + EX31_RS13855 0.85 +1.2
31,805 + EX31_RS13855 0.85 +0.9
31,805 + EX31_RS13855 0.85 +1.0
31,806 - EX31_RS13855 0.85 -0.1
31,818 + EX31_RS13855 0.86 +0.5
31,845 + EX31_RS13855 0.88 -0.8
31,980 + +1.5
32,083 + -0.4
32,083 + -0.5
32,111 + -0.2
32,111 + +1.2
32,111 + +0.3
32,112 - +1.0
32,112 - +0.1
32,112 - +0.5
32,112 - +2.4
32,112 - +0.5
32,133 + +0.5
32,134 - +0.0
32,238 + +0.5
32,238 + -0.8
32,315 + +0.4
32,315 + +1.0
32,331 + -0.4
32,331 + +0.0
32,331 + +0.7
32,331 + +0.4
32,331 + +0.1
32,544 - +0.8
32,701 + +0.2
32,823 + +0.2
32,823 + -1.6
32,826 + +0.9
32,850 + +0.3
32,856 + -1.0
32,856 + -1.3

Or see this region's nucleotide sequence