Strain Fitness in Rahnella sp. WP5 around EX31_RS13055

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13050 and EX31_RS13055 are separated by 144 nucleotidesEX31_RS13055 and EX31_RS13060 are separated by 93 nucleotidesEX31_RS13060 and EX31_RS13065 are separated by 42 nucleotides EX31_RS13050: EX31_RS13050 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 37,653 to 38,477 _RS13050 EX31_RS13055: EX31_RS13055 - DUF3461 family protein, at 38,622 to 39,011 _RS13055 EX31_RS13060: EX31_RS13060 - flavodoxin, at 39,105 to 39,554 _RS13060 EX31_RS13065: EX31_RS13065 - tRNA pseudouridine(65) synthase TruC, at 39,597 to 40,376 _RS13065 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 38.476 kb on - strandat 38.487 kb on + strandat 38.532 kb on + strandat 38.552 kb on + strandat 38.552 kb on + strandat 38.553 kb on - strandat 38.606 kb on - strandat 38.621 kb on + strandat 38.621 kb on + strandat 38.622 kb on - strandat 38.622 kb on - strandat 38.622 kb on - strandat 38.622 kb on - strandat 38.625 kb on + strandat 38.625 kb on + strandat 38.625 kb on + strandat 38.625 kb on + strandat 38.625 kb on + strandat 38.625 kb on + strandat 38.625 kb on + strandat 38.626 kb on - strandat 38.626 kb on - strandat 38.626 kb on - strandat 38.626 kb on - strandat 38.651 kb on + strandat 38.651 kb on + strandat 38.652 kb on - strandat 38.652 kb on - strandat 38.652 kb on - strandat 38.654 kb on + strandat 38.655 kb on - strandat 38.655 kb on - strandat 38.666 kb on + strand, within EX31_RS13055at 38.667 kb on - strand, within EX31_RS13055at 38.677 kb on - strand, within EX31_RS13055at 38.677 kb on - strand, within EX31_RS13055at 38.677 kb on - strand, within EX31_RS13055at 38.718 kb on + strand, within EX31_RS13055at 38.718 kb on + strand, within EX31_RS13055at 38.718 kb on + strand, within EX31_RS13055at 38.719 kb on - strand, within EX31_RS13055at 38.719 kb on - strand, within EX31_RS13055at 38.732 kb on + strand, within EX31_RS13055at 38.732 kb on + strand, within EX31_RS13055at 38.732 kb on + strand, within EX31_RS13055at 38.732 kb on + strand, within EX31_RS13055at 38.733 kb on - strand, within EX31_RS13055at 38.765 kb on + strand, within EX31_RS13055at 38.765 kb on + strand, within EX31_RS13055at 38.765 kb on + strand, within EX31_RS13055at 38.765 kb on + strand, within EX31_RS13055at 38.766 kb on - strand, within EX31_RS13055at 38.818 kb on - strand, within EX31_RS13055at 38.853 kb on + strand, within EX31_RS13055at 38.916 kb on - strand, within EX31_RS13055at 38.932 kb on + strand, within EX31_RS13055at 38.932 kb on + strand, within EX31_RS13055at 39.012 kb on + strandat 39.012 kb on + strandat 39.037 kb on - strandat 39.037 kb on - strandat 39.107 kb on - strandat 39.107 kb on - strandat 39.110 kb on + strandat 39.111 kb on - strandat 39.226 kb on - strand, within EX31_RS13060at 39.240 kb on - strand, within EX31_RS13060at 39.240 kb on - strand, within EX31_RS13060at 39.265 kb on + strand, within EX31_RS13060at 39.265 kb on + strand, within EX31_RS13060at 39.266 kb on - strand, within EX31_RS13060at 39.266 kb on - strand, within EX31_RS13060at 39.266 kb on - strand, within EX31_RS13060at 39.272 kb on + strand, within EX31_RS13060at 39.273 kb on - strand, within EX31_RS13060at 39.340 kb on + strand, within EX31_RS13060at 39.340 kb on + strand, within EX31_RS13060at 39.340 kb on + strand, within EX31_RS13060at 39.340 kb on + strand, within EX31_RS13060at 39.340 kb on + strand, within EX31_RS13060at 39.340 kb on + strand, within EX31_RS13060at 39.340 kb on + strand, within EX31_RS13060at 39.340 kb on + strand, within EX31_RS13060at 39.341 kb on - strand, within EX31_RS13060at 39.341 kb on - strand, within EX31_RS13060at 39.341 kb on - strand, within EX31_RS13060at 39.341 kb on - strand, within EX31_RS13060at 39.341 kb on - strand, within EX31_RS13060at 39.341 kb on - strand, within EX31_RS13060at 39.341 kb on - strand, within EX31_RS13060at 39.341 kb on - strand, within EX31_RS13060at 39.341 kb on - strand, within EX31_RS13060at 39.341 kb on - strand, within EX31_RS13060at 39.341 kb on - strand, within EX31_RS13060at 39.415 kb on + strand, within EX31_RS13060at 39.418 kb on + strand, within EX31_RS13060at 39.419 kb on - strand, within EX31_RS13060at 39.520 kb on + strandat 39.520 kb on + strandat 39.521 kb on - strandat 39.521 kb on - strandat 39.523 kb on - strandat 39.528 kb on - strandat 39.528 kb on - strandat 39.580 kb on + strandat 39.580 kb on + strandat 39.580 kb on + strandat 39.580 kb on + strandat 39.611 kb on + strandat 39.761 kb on + strand, within EX31_RS13065at 39.761 kb on + strand, within EX31_RS13065at 39.761 kb on + strand, within EX31_RS13065at 39.762 kb on - strand, within EX31_RS13065at 39.762 kb on - strand, within EX31_RS13065at 39.762 kb on - strand, within EX31_RS13065at 39.762 kb on - strand, within EX31_RS13065at 39.762 kb on - strand, within EX31_RS13065at 39.826 kb on - strand, within EX31_RS13065at 39.826 kb on - strand, within EX31_RS13065at 39.826 kb on - strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.875 kb on + strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.876 kb on - strand, within EX31_RS13065at 39.897 kb on - strand, within EX31_RS13065at 39.897 kb on - strand, within EX31_RS13065at 39.929 kb on + strand, within EX31_RS13065at 39.929 kb on + strand, within EX31_RS13065at 39.929 kb on + strand, within EX31_RS13065at 39.930 kb on - strand, within EX31_RS13065at 39.930 kb on - strand, within EX31_RS13065at 39.941 kb on + strand, within EX31_RS13065at 39.941 kb on + strand, within EX31_RS13065at 39.941 kb on + strand, within EX31_RS13065at 39.946 kb on + strand, within EX31_RS13065

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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38,476 - +0.1
38,487 + +0.9
38,532 + +2.1
38,552 + -0.3
38,552 + +0.7
38,553 - -2.3
38,606 - +1.2
38,621 + -1.0
38,621 + -1.5
38,622 - -0.4
38,622 - +0.7
38,622 - +0.7
38,622 - -0.7
38,625 + +1.6
38,625 + +0.8
38,625 + +1.5
38,625 + -2.7
38,625 + -0.0
38,625 + -0.6
38,625 + +1.1
38,626 - +0.5
38,626 - -1.0
38,626 - +0.2
38,626 - -0.1
38,651 + +0.9
38,651 + -0.6
38,652 - +1.0
38,652 - +1.0
38,652 - +1.4
38,654 + -0.9
38,655 - -0.2
38,655 - +1.9
38,666 + EX31_RS13055 0.11 +0.4
38,667 - EX31_RS13055 0.12 +0.5
38,677 - EX31_RS13055 0.14 +0.6
38,677 - EX31_RS13055 0.14 -0.7
38,677 - EX31_RS13055 0.14 -1.5
38,718 + EX31_RS13055 0.25 +0.8
38,718 + EX31_RS13055 0.25 -0.1
38,718 + EX31_RS13055 0.25 +0.8
38,719 - EX31_RS13055 0.25 +0.9
38,719 - EX31_RS13055 0.25 -0.6
38,732 + EX31_RS13055 0.28 -0.3
38,732 + EX31_RS13055 0.28 +1.1
38,732 + EX31_RS13055 0.28 +1.6
38,732 + EX31_RS13055 0.28 +0.1
38,733 - EX31_RS13055 0.28 -0.7
38,765 + EX31_RS13055 0.37 +0.4
38,765 + EX31_RS13055 0.37 -0.6
38,765 + EX31_RS13055 0.37 -0.4
38,765 + EX31_RS13055 0.37 +0.5
38,766 - EX31_RS13055 0.37 +1.8
38,818 - EX31_RS13055 0.50 +1.1
38,853 + EX31_RS13055 0.59 -2.1
38,916 - EX31_RS13055 0.75 -0.3
38,932 + EX31_RS13055 0.79 +1.3
38,932 + EX31_RS13055 0.79 -0.1
39,012 + +0.1
39,012 + +0.4
39,037 - -1.3
39,037 - -0.8
39,107 - -0.3
39,107 - +0.3
39,110 + +1.2
39,111 - -0.3
39,226 - EX31_RS13060 0.27 +0.6
39,240 - EX31_RS13060 0.30 +0.4
39,240 - EX31_RS13060 0.30 +1.4
39,265 + EX31_RS13060 0.36 +0.5
39,265 + EX31_RS13060 0.36 -0.8
39,266 - EX31_RS13060 0.36 -0.4
39,266 - EX31_RS13060 0.36 +0.3
39,266 - EX31_RS13060 0.36 +0.5
39,272 + EX31_RS13060 0.37 -0.5
39,273 - EX31_RS13060 0.37 +0.1
39,340 + EX31_RS13060 0.52 -1.9
39,340 + EX31_RS13060 0.52 +0.4
39,340 + EX31_RS13060 0.52 +1.6
39,340 + EX31_RS13060 0.52 +1.3
39,340 + EX31_RS13060 0.52 +0.1
39,340 + EX31_RS13060 0.52 -1.5
39,340 + EX31_RS13060 0.52 +0.2
39,340 + EX31_RS13060 0.52 +1.0
39,341 - EX31_RS13060 0.52 +0.9
39,341 - EX31_RS13060 0.52 +0.4
39,341 - EX31_RS13060 0.52 -1.6
39,341 - EX31_RS13060 0.52 -0.4
39,341 - EX31_RS13060 0.52 +0.3
39,341 - EX31_RS13060 0.52 +0.3
39,341 - EX31_RS13060 0.52 -0.1
39,341 - EX31_RS13060 0.52 -1.0
39,341 - EX31_RS13060 0.52 -0.3
39,341 - EX31_RS13060 0.52 -1.1
39,341 - EX31_RS13060 0.52 +0.6
39,415 + EX31_RS13060 0.69 +0.2
39,418 + EX31_RS13060 0.70 -0.3
39,419 - EX31_RS13060 0.70 +1.4
39,520 + +0.3
39,520 + +1.7
39,521 - +0.9
39,521 - -0.3
39,523 - -0.8
39,528 - -0.7
39,528 - +1.1
39,580 + +0.7
39,580 + +0.7
39,580 + -0.8
39,580 + -0.1
39,611 + -0.1
39,761 + EX31_RS13065 0.21 -0.3
39,761 + EX31_RS13065 0.21 -0.5
39,761 + EX31_RS13065 0.21 +0.6
39,762 - EX31_RS13065 0.21 +0.2
39,762 - EX31_RS13065 0.21 -0.6
39,762 - EX31_RS13065 0.21 -1.1
39,762 - EX31_RS13065 0.21 +0.5
39,762 - EX31_RS13065 0.21 +2.1
39,826 - EX31_RS13065 0.29 +0.3
39,826 - EX31_RS13065 0.29 +1.0
39,826 - EX31_RS13065 0.29 +0.2
39,875 + EX31_RS13065 0.36 -0.5
39,875 + EX31_RS13065 0.36 +0.1
39,875 + EX31_RS13065 0.36 -0.1
39,875 + EX31_RS13065 0.36 +0.1
39,875 + EX31_RS13065 0.36 +0.3
39,875 + EX31_RS13065 0.36 -0.4
39,875 + EX31_RS13065 0.36 +0.7
39,875 + EX31_RS13065 0.36 +0.3
39,875 + EX31_RS13065 0.36 -2.5
39,875 + EX31_RS13065 0.36 +0.4
39,876 - EX31_RS13065 0.36 +0.4
39,876 - EX31_RS13065 0.36 -0.9
39,876 - EX31_RS13065 0.36 -0.2
39,876 - EX31_RS13065 0.36 -0.3
39,876 - EX31_RS13065 0.36 -2.8
39,876 - EX31_RS13065 0.36 +0.3
39,876 - EX31_RS13065 0.36 +0.1
39,876 - EX31_RS13065 0.36 -0.1
39,876 - EX31_RS13065 0.36 +0.7
39,876 - EX31_RS13065 0.36 -0.5
39,876 - EX31_RS13065 0.36 +0.2
39,876 - EX31_RS13065 0.36 +0.1
39,876 - EX31_RS13065 0.36 -0.2
39,876 - EX31_RS13065 0.36 +0.3
39,876 - EX31_RS13065 0.36 +1.1
39,897 - EX31_RS13065 0.38 -0.1
39,897 - EX31_RS13065 0.38 +0.1
39,929 + EX31_RS13065 0.43 -0.5
39,929 + EX31_RS13065 0.43 -0.1
39,929 + EX31_RS13065 0.43 +0.4
39,930 - EX31_RS13065 0.43 +0.0
39,930 - EX31_RS13065 0.43 +0.6
39,941 + EX31_RS13065 0.44 +0.6
39,941 + EX31_RS13065 0.44 +0.8
39,941 + EX31_RS13065 0.44 +0.7
39,946 + EX31_RS13065 0.45 +0.5

Or see this region's nucleotide sequence