Strain Fitness in Rahnella sp. WP5 around EX31_RS11450

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11445 and EX31_RS11450 overlap by 4 nucleotidesEX31_RS11450 and EX31_RS11455 overlap by 1 nucleotidesEX31_RS11455 and EX31_RS11460 are separated by 5 nucleotides EX31_RS11445: EX31_RS11445 - histidinol-phosphate transaminase, at 223,334 to 224,467 _RS11445 EX31_RS11450: EX31_RS11450 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 224,464 to 225,546 _RS11450 EX31_RS11455: EX31_RS11455 - imidazole glycerol phosphate synthase subunit HisH, at 225,546 to 226,136 _RS11455 EX31_RS11460: EX31_RS11460 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 226,142 to 226,879 _RS11460 Position (kb) 224 225 226Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 223.550 kb on + strand, within EX31_RS11445at 223.550 kb on + strand, within EX31_RS11445at 223.679 kb on + strand, within EX31_RS11445at 223.679 kb on + strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.793 kb on + strand, within EX31_RS11445at 223.793 kb on + strand, within EX31_RS11445at 223.825 kb on + strand, within EX31_RS11445at 223.884 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.902 kb on - strand, within EX31_RS11445at 223.902 kb on - strand, within EX31_RS11445at 223.902 kb on - strand, within EX31_RS11445at 223.903 kb on + strand, within EX31_RS11445at 223.904 kb on - strand, within EX31_RS11445at 224.046 kb on + strand, within EX31_RS11445at 224.046 kb on + strand, within EX31_RS11445at 224.047 kb on - strand, within EX31_RS11445at 224.050 kb on - strand, within EX31_RS11445at 224.070 kb on - strand, within EX31_RS11445at 224.076 kb on + strand, within EX31_RS11445at 224.080 kb on + strand, within EX31_RS11445at 224.081 kb on - strand, within EX31_RS11445at 224.233 kb on + strand, within EX31_RS11445at 224.233 kb on + strand, within EX31_RS11445at 224.234 kb on - strand, within EX31_RS11445at 224.234 kb on - strand, within EX31_RS11445at 224.234 kb on - strand, within EX31_RS11445at 224.237 kb on + strand, within EX31_RS11445at 224.237 kb on + strand, within EX31_RS11445at 224.237 kb on + strand, within EX31_RS11445at 224.238 kb on - strand, within EX31_RS11445at 224.238 kb on - strand, within EX31_RS11445at 224.238 kb on - strand, within EX31_RS11445at 224.255 kb on + strand, within EX31_RS11445at 224.255 kb on + strand, within EX31_RS11445at 224.276 kb on - strand, within EX31_RS11445at 224.434 kb on + strandat 224.600 kb on + strand, within EX31_RS11450at 224.601 kb on - strand, within EX31_RS11450at 224.834 kb on + strand, within EX31_RS11450at 224.834 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.855 kb on - strand, within EX31_RS11450at 225.087 kb on + strand, within EX31_RS11450at 225.087 kb on + strand, within EX31_RS11450at 225.087 kb on + strand, within EX31_RS11450at 225.087 kb on + strand, within EX31_RS11450at 225.088 kb on - strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.152 kb on - strand, within EX31_RS11450at 225.225 kb on + strand, within EX31_RS11450at 225.320 kb on - strand, within EX31_RS11450at 225.334 kb on - strand, within EX31_RS11450at 225.337 kb on + strand, within EX31_RS11450at 225.397 kb on + strand, within EX31_RS11450at 225.397 kb on + strand, within EX31_RS11450at 225.397 kb on + strand, within EX31_RS11450at 225.398 kb on - strand, within EX31_RS11450at 225.597 kb on + strandat 225.891 kb on - strand, within EX31_RS11455at 225.891 kb on - strand, within EX31_RS11455at 225.891 kb on - strand, within EX31_RS11455at 225.932 kb on - strand, within EX31_RS11455at 225.932 kb on - strand, within EX31_RS11455at 225.957 kb on + strand, within EX31_RS11455at 225.957 kb on + strand, within EX31_RS11455at 225.957 kb on + strand, within EX31_RS11455at 225.958 kb on - strand, within EX31_RS11455at 225.958 kb on - strand, within EX31_RS11455at 225.964 kb on - strand, within EX31_RS11455at 225.964 kb on - strand, within EX31_RS11455at 225.964 kb on - strand, within EX31_RS11455at 226.020 kb on + strand, within EX31_RS11455at 226.134 kb on + strandat 226.134 kb on + strandat 226.134 kb on + strandat 226.134 kb on + strandat 226.134 kb on + strandat 226.135 kb on - strandat 226.135 kb on - strandat 226.135 kb on - strandat 226.147 kb on + strandat 226.202 kb on + strandat 226.202 kb on + strandat 226.345 kb on - strand, within EX31_RS11460at 226.530 kb on + strand, within EX31_RS11460at 226.530 kb on + strand, within EX31_RS11460at 226.531 kb on - strand, within EX31_RS11460

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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223,550 + EX31_RS11445 0.19 -2.1
223,550 + EX31_RS11445 0.19 -2.2
223,679 + EX31_RS11445 0.30 -3.0
223,679 + EX31_RS11445 0.30 -2.0
223,680 - EX31_RS11445 0.31 -1.5
223,680 - EX31_RS11445 0.31 +0.2
223,680 - EX31_RS11445 0.31 -3.5
223,680 - EX31_RS11445 0.31 -0.5
223,680 - EX31_RS11445 0.31 -2.1
223,793 + EX31_RS11445 0.40 -1.0
223,793 + EX31_RS11445 0.40 -2.0
223,825 + EX31_RS11445 0.43 -2.4
223,884 + EX31_RS11445 0.49 -1.2
223,901 + EX31_RS11445 0.50 -1.9
223,901 + EX31_RS11445 0.50 -0.2
223,901 + EX31_RS11445 0.50 -2.5
223,901 + EX31_RS11445 0.50 -2.9
223,901 + EX31_RS11445 0.50 -2.2
223,901 + EX31_RS11445 0.50 -0.8
223,901 + EX31_RS11445 0.50 -2.4
223,901 + EX31_RS11445 0.50 -3.8
223,902 - EX31_RS11445 0.50 -1.2
223,902 - EX31_RS11445 0.50 -1.5
223,902 - EX31_RS11445 0.50 -2.5
223,903 + EX31_RS11445 0.50 -2.5
223,904 - EX31_RS11445 0.50 -1.6
224,046 + EX31_RS11445 0.63 -2.6
224,046 + EX31_RS11445 0.63 -2.9
224,047 - EX31_RS11445 0.63 +0.2
224,050 - EX31_RS11445 0.63 -3.3
224,070 - EX31_RS11445 0.65 -2.4
224,076 + EX31_RS11445 0.65 -1.3
224,080 + EX31_RS11445 0.66 +0.8
224,081 - EX31_RS11445 0.66 -1.0
224,233 + EX31_RS11445 0.79 -3.0
224,233 + EX31_RS11445 0.79 -2.4
224,234 - EX31_RS11445 0.79 -1.4
224,234 - EX31_RS11445 0.79 -2.0
224,234 - EX31_RS11445 0.79 -2.1
224,237 + EX31_RS11445 0.80 -0.6
224,237 + EX31_RS11445 0.80 -1.0
224,237 + EX31_RS11445 0.80 +0.2
224,238 - EX31_RS11445 0.80 -0.8
224,238 - EX31_RS11445 0.80 -1.4
224,238 - EX31_RS11445 0.80 -0.5
224,255 + EX31_RS11445 0.81 -0.5
224,255 + EX31_RS11445 0.81 -1.8
224,276 - EX31_RS11445 0.83 -2.5
224,434 + +1.1
224,600 + EX31_RS11450 0.13 -3.1
224,601 - EX31_RS11450 0.13 -1.5
224,834 + EX31_RS11450 0.34 -0.5
224,834 + EX31_RS11450 0.34 -2.7
224,854 + EX31_RS11450 0.36 -1.0
224,854 + EX31_RS11450 0.36 -1.6
224,854 + EX31_RS11450 0.36 -1.0
224,854 + EX31_RS11450 0.36 -1.0
224,854 + EX31_RS11450 0.36 -1.9
224,854 + EX31_RS11450 0.36 -2.4
224,854 + EX31_RS11450 0.36 -0.8
224,855 - EX31_RS11450 0.36 -2.0
225,087 + EX31_RS11450 0.58 -0.5
225,087 + EX31_RS11450 0.58 -0.8
225,087 + EX31_RS11450 0.58 -1.9
225,087 + EX31_RS11450 0.58 +0.2
225,088 - EX31_RS11450 0.58 -2.7
225,151 + EX31_RS11450 0.63 -2.9
225,151 + EX31_RS11450 0.63 -1.2
225,151 + EX31_RS11450 0.63 -2.0
225,151 + EX31_RS11450 0.63 -1.9
225,151 + EX31_RS11450 0.63 -2.4
225,151 + EX31_RS11450 0.63 -3.4
225,151 + EX31_RS11450 0.63 -1.2
225,151 + EX31_RS11450 0.63 -0.2
225,152 - EX31_RS11450 0.64 -0.8
225,225 + EX31_RS11450 0.70 +0.2
225,320 - EX31_RS11450 0.79 -1.6
225,334 - EX31_RS11450 0.80 -2.4
225,337 + EX31_RS11450 0.81 -1.6
225,397 + EX31_RS11450 0.86 +0.2
225,397 + EX31_RS11450 0.86 -1.9
225,397 + EX31_RS11450 0.86 -2.7
225,398 - EX31_RS11450 0.86 -2.4
225,597 + +0.8
225,891 - EX31_RS11455 0.58 -1.1
225,891 - EX31_RS11455 0.58 -1.0
225,891 - EX31_RS11455 0.58 -0.8
225,932 - EX31_RS11455 0.65 -1.9
225,932 - EX31_RS11455 0.65 +0.6
225,957 + EX31_RS11455 0.70 -1.5
225,957 + EX31_RS11455 0.70 -2.6
225,957 + EX31_RS11455 0.70 -1.0
225,958 - EX31_RS11455 0.70 -3.4
225,958 - EX31_RS11455 0.70 -1.0
225,964 - EX31_RS11455 0.71 -2.1
225,964 - EX31_RS11455 0.71 -3.2
225,964 - EX31_RS11455 0.71 -2.4
226,020 + EX31_RS11455 0.80 -2.4
226,134 + -1.5
226,134 + -2.9
226,134 + -2.4
226,134 + -0.8
226,134 + -3.5
226,135 - -1.3
226,135 - -2.1
226,135 - -0.8
226,147 + -2.3
226,202 + -1.4
226,202 + -1.4
226,345 - EX31_RS11460 0.28 -2.1
226,530 + EX31_RS11460 0.53 -2.2
226,530 + EX31_RS11460 0.53 -0.2
226,531 - EX31_RS11460 0.53 -2.4

Or see this region's nucleotide sequence