Strain Fitness in Rahnella sp. WP5 around EX31_RS11270

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11265 and EX31_RS11270 are separated by 27 nucleotidesEX31_RS11270 and EX31_RS11275 are separated by 140 nucleotides EX31_RS11265: EX31_RS11265 - flagellar hook-filament junction protein FlgL, at 185,409 to 186,371 _RS11265 EX31_RS11270: EX31_RS11270 - flagellar hook-associated protein FlgK, at 186,399 to 188,051 _RS11270 EX31_RS11275: EX31_RS11275 - flagellar assembly peptidoglycan hydrolase FlgJ, at 188,192 to 189,142 _RS11275 Position (kb) 186 187 188 189Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 185.407 kb on + strandat 185.408 kb on - strandat 185.408 kb on - strandat 185.435 kb on + strandat 185.435 kb on + strandat 185.435 kb on + strandat 185.436 kb on - strandat 185.436 kb on - strandat 185.436 kb on - strandat 185.436 kb on - strandat 185.452 kb on + strandat 185.453 kb on - strandat 185.459 kb on + strandat 185.459 kb on + strandat 185.459 kb on + strandat 185.460 kb on - strandat 185.460 kb on - strandat 185.460 kb on - strandat 185.460 kb on - strandat 185.460 kb on - strandat 185.460 kb on - strandat 185.460 kb on - strandat 185.460 kb on - strandat 185.461 kb on + strandat 185.461 kb on + strandat 185.461 kb on + strandat 185.461 kb on + strandat 185.461 kb on + strandat 185.461 kb on + strandat 185.461 kb on + strandat 185.462 kb on - strandat 185.462 kb on - strandat 185.462 kb on - strandat 185.462 kb on - strandat 185.462 kb on - strandat 185.462 kb on - strandat 185.462 kb on - strandat 185.462 kb on - strandat 185.462 kb on - strandat 185.494 kb on + strandat 185.494 kb on + strandat 185.495 kb on - strandat 185.495 kb on - strandat 185.652 kb on - strand, within EX31_RS11265at 185.696 kb on + strand, within EX31_RS11265at 185.760 kb on + strand, within EX31_RS11265at 185.865 kb on - strand, within EX31_RS11265at 185.879 kb on + strand, within EX31_RS11265at 185.882 kb on + strand, within EX31_RS11265at 185.882 kb on + strand, within EX31_RS11265at 185.883 kb on - strand, within EX31_RS11265at 185.903 kb on - strand, within EX31_RS11265at 185.933 kb on + strand, within EX31_RS11265at 185.933 kb on + strand, within EX31_RS11265at 185.933 kb on + strand, within EX31_RS11265at 185.933 kb on + strand, within EX31_RS11265at 185.934 kb on - strand, within EX31_RS11265at 185.934 kb on - strand, within EX31_RS11265at 185.934 kb on - strand, within EX31_RS11265at 185.934 kb on - strand, within EX31_RS11265at 185.934 kb on - strand, within EX31_RS11265at 185.934 kb on - strand, within EX31_RS11265at 185.934 kb on - strand, within EX31_RS11265at 185.945 kb on + strand, within EX31_RS11265at 185.945 kb on + strand, within EX31_RS11265at 186.155 kb on + strand, within EX31_RS11265at 186.156 kb on - strand, within EX31_RS11265at 186.156 kb on - strand, within EX31_RS11265at 186.288 kb on + strandat 186.288 kb on + strandat 186.347 kb on - strandat 186.347 kb on - strandat 186.347 kb on - strandat 186.347 kb on - strandat 186.347 kb on - strandat 186.354 kb on - strandat 186.362 kb on + strandat 186.362 kb on + strandat 186.363 kb on - strandat 186.467 kb on - strandat 186.467 kb on - strandat 186.467 kb on - strandat 186.467 kb on - strandat 186.467 kb on - strandat 186.467 kb on - strandat 186.467 kb on - strandat 186.470 kb on - strandat 186.470 kb on - strandat 186.470 kb on - strandat 186.478 kb on + strandat 186.497 kb on - strandat 186.524 kb on + strandat 186.611 kb on + strand, within EX31_RS11270at 186.611 kb on + strand, within EX31_RS11270at 186.611 kb on + strand, within EX31_RS11270at 186.611 kb on + strand, within EX31_RS11270at 186.611 kb on + strand, within EX31_RS11270at 186.611 kb on + strand, within EX31_RS11270at 186.612 kb on - strand, within EX31_RS11270at 186.612 kb on - strand, within EX31_RS11270at 186.615 kb on + strand, within EX31_RS11270at 186.615 kb on + strand, within EX31_RS11270at 186.616 kb on - strand, within EX31_RS11270at 186.616 kb on - strand, within EX31_RS11270at 186.616 kb on - strand, within EX31_RS11270at 186.822 kb on - strand, within EX31_RS11270at 186.933 kb on + strand, within EX31_RS11270at 186.934 kb on - strand, within EX31_RS11270at 186.955 kb on + strand, within EX31_RS11270at 186.956 kb on - strand, within EX31_RS11270at 186.963 kb on - strand, within EX31_RS11270at 186.967 kb on + strand, within EX31_RS11270at 186.967 kb on + strand, within EX31_RS11270at 186.968 kb on - strand, within EX31_RS11270at 186.999 kb on - strand, within EX31_RS11270at 187.000 kb on + strand, within EX31_RS11270at 187.000 kb on + strand, within EX31_RS11270at 187.001 kb on - strand, within EX31_RS11270at 187.001 kb on - strand, within EX31_RS11270at 187.001 kb on - strand, within EX31_RS11270at 187.001 kb on - strand, within EX31_RS11270at 187.374 kb on - strand, within EX31_RS11270at 187.374 kb on - strand, within EX31_RS11270at 187.374 kb on - strand, within EX31_RS11270at 187.374 kb on - strand, within EX31_RS11270at 187.378 kb on + strand, within EX31_RS11270at 187.378 kb on + strand, within EX31_RS11270at 187.378 kb on + strand, within EX31_RS11270at 187.378 kb on + strand, within EX31_RS11270at 187.378 kb on + strand, within EX31_RS11270at 187.378 kb on + strand, within EX31_RS11270at 187.379 kb on - strand, within EX31_RS11270at 187.379 kb on - strand, within EX31_RS11270at 187.382 kb on + strand, within EX31_RS11270at 187.382 kb on + strand, within EX31_RS11270at 187.382 kb on + strand, within EX31_RS11270at 187.382 kb on + strand, within EX31_RS11270at 187.467 kb on - strand, within EX31_RS11270at 187.467 kb on - strand, within EX31_RS11270at 187.534 kb on + strand, within EX31_RS11270at 187.534 kb on + strand, within EX31_RS11270at 187.534 kb on + strand, within EX31_RS11270at 187.534 kb on + strand, within EX31_RS11270at 187.534 kb on + strand, within EX31_RS11270at 187.534 kb on + strand, within EX31_RS11270at 187.535 kb on - strand, within EX31_RS11270at 187.535 kb on - strand, within EX31_RS11270at 187.535 kb on - strand, within EX31_RS11270at 187.535 kb on - strand, within EX31_RS11270at 187.535 kb on - strand, within EX31_RS11270at 187.600 kb on + strand, within EX31_RS11270at 187.601 kb on - strand, within EX31_RS11270at 187.850 kb on - strand, within EX31_RS11270at 187.890 kb on - strandat 187.892 kb on - strandat 187.905 kb on - strandat 187.917 kb on - strandat 187.926 kb on - strandat 187.947 kb on - strandat 187.949 kb on - strandat 188.033 kb on + strandat 188.034 kb on - strandat 188.037 kb on + strandat 188.038 kb on - strandat 188.038 kb on - strandat 188.038 kb on - strandat 188.082 kb on - strandat 188.091 kb on + strandat 188.092 kb on - strandat 188.092 kb on - strandat 188.095 kb on + strandat 188.095 kb on + strandat 188.200 kb on + strandat 188.200 kb on + strandat 188.220 kb on + strandat 188.286 kb on + strandat 188.287 kb on - strand, within EX31_RS11275at 188.344 kb on + strand, within EX31_RS11275at 188.344 kb on + strand, within EX31_RS11275at 188.384 kb on - strand, within EX31_RS11275at 188.397 kb on + strand, within EX31_RS11275at 188.398 kb on - strand, within EX31_RS11275at 188.398 kb on - strand, within EX31_RS11275at 188.398 kb on - strand, within EX31_RS11275at 188.418 kb on + strand, within EX31_RS11275at 188.419 kb on - strand, within EX31_RS11275at 188.419 kb on - strand, within EX31_RS11275at 188.419 kb on - strand, within EX31_RS11275at 188.427 kb on + strand, within EX31_RS11275at 188.427 kb on + strand, within EX31_RS11275at 188.470 kb on + strand, within EX31_RS11275at 188.471 kb on - strand, within EX31_RS11275at 188.471 kb on - strand, within EX31_RS11275at 188.471 kb on - strand, within EX31_RS11275at 188.642 kb on - strand, within EX31_RS11275at 188.755 kb on - strand, within EX31_RS11275at 188.926 kb on - strand, within EX31_RS11275at 188.926 kb on - strand, within EX31_RS11275at 188.926 kb on - strand, within EX31_RS11275at 188.935 kb on + strand, within EX31_RS11275

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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185,407 + -1.0
185,408 - -0.2
185,408 - +0.5
185,435 + -0.5
185,435 + -0.4
185,435 + +1.0
185,436 - -0.5
185,436 - +0.6
185,436 - -0.8
185,436 - -1.0
185,452 + +2.8
185,453 - -1.2
185,459 + -0.9
185,459 + -0.7
185,459 + +0.5
185,460 - +1.1
185,460 - -1.4
185,460 - +1.1
185,460 - +0.2
185,460 - -0.2
185,460 - +0.8
185,460 - -0.5
185,460 - -2.0
185,461 + +1.0
185,461 + +0.1
185,461 + -0.2
185,461 + +2.8
185,461 + +0.4
185,461 + +0.2
185,461 + -2.3
185,462 - -0.8
185,462 - -1.9
185,462 - +0.2
185,462 - +1.4
185,462 - -1.4
185,462 - -0.6
185,462 - +0.2
185,462 - +0.6
185,462 - -0.5
185,494 + -0.9
185,494 + -2.4
185,495 - +0.2
185,495 - +1.6
185,652 - EX31_RS11265 0.25 +1.6
185,696 + EX31_RS11265 0.30 -1.0
185,760 + EX31_RS11265 0.36 -0.7
185,865 - EX31_RS11265 0.47 -1.2
185,879 + EX31_RS11265 0.49 -2.8
185,882 + EX31_RS11265 0.49 +0.8
185,882 + EX31_RS11265 0.49 +1.4
185,883 - EX31_RS11265 0.49 +0.8
185,903 - EX31_RS11265 0.51 -0.5
185,933 + EX31_RS11265 0.54 -1.0
185,933 + EX31_RS11265 0.54 +0.7
185,933 + EX31_RS11265 0.54 +0.5
185,933 + EX31_RS11265 0.54 +0.2
185,934 - EX31_RS11265 0.55 -0.4
185,934 - EX31_RS11265 0.55 -0.8
185,934 - EX31_RS11265 0.55 +0.6
185,934 - EX31_RS11265 0.55 +2.2
185,934 - EX31_RS11265 0.55 -0.3
185,934 - EX31_RS11265 0.55 -0.4
185,934 - EX31_RS11265 0.55 -2.7
185,945 + EX31_RS11265 0.56 -1.9
185,945 + EX31_RS11265 0.56 -0.8
186,155 + EX31_RS11265 0.77 -1.4
186,156 - EX31_RS11265 0.78 -1.4
186,156 - EX31_RS11265 0.78 -1.0
186,288 + -0.6
186,288 + -0.1
186,347 - -1.0
186,347 - -1.6
186,347 - +1.5
186,347 - -0.5
186,347 - +0.2
186,354 - -1.2
186,362 + -0.3
186,362 + -1.2
186,363 - -0.8
186,467 - +0.0
186,467 - +0.8
186,467 - -1.0
186,467 - -0.5
186,467 - -0.3
186,467 - -1.0
186,467 - -1.6
186,470 - +0.2
186,470 - -1.0
186,470 - +0.8
186,478 + +1.8
186,497 - +1.0
186,524 + +0.2
186,611 + EX31_RS11270 0.13 -1.6
186,611 + EX31_RS11270 0.13 -1.0
186,611 + EX31_RS11270 0.13 -0.5
186,611 + EX31_RS11270 0.13 -1.8
186,611 + EX31_RS11270 0.13 +1.8
186,611 + EX31_RS11270 0.13 -1.0
186,612 - EX31_RS11270 0.13 +0.2
186,612 - EX31_RS11270 0.13 -0.2
186,615 + EX31_RS11270 0.13 -0.4
186,615 + EX31_RS11270 0.13 +1.0
186,616 - EX31_RS11270 0.13 +0.2
186,616 - EX31_RS11270 0.13 -2.7
186,616 - EX31_RS11270 0.13 +0.6
186,822 - EX31_RS11270 0.26 +0.4
186,933 + EX31_RS11270 0.32 -2.6
186,934 - EX31_RS11270 0.32 -1.4
186,955 + EX31_RS11270 0.34 +1.5
186,956 - EX31_RS11270 0.34 -0.2
186,963 - EX31_RS11270 0.34 -0.3
186,967 + EX31_RS11270 0.34 -1.5
186,967 + EX31_RS11270 0.34 +0.7
186,968 - EX31_RS11270 0.34 -1.9
186,999 - EX31_RS11270 0.36 -0.6
187,000 + EX31_RS11270 0.36 +0.7
187,000 + EX31_RS11270 0.36 -0.4
187,001 - EX31_RS11270 0.36 -0.4
187,001 - EX31_RS11270 0.36 -1.8
187,001 - EX31_RS11270 0.36 -1.6
187,001 - EX31_RS11270 0.36 -1.5
187,374 - EX31_RS11270 0.59 +0.2
187,374 - EX31_RS11270 0.59 +1.1
187,374 - EX31_RS11270 0.59 -1.9
187,374 - EX31_RS11270 0.59 +0.1
187,378 + EX31_RS11270 0.59 +0.1
187,378 + EX31_RS11270 0.59 -1.8
187,378 + EX31_RS11270 0.59 +0.8
187,378 + EX31_RS11270 0.59 -1.6
187,378 + EX31_RS11270 0.59 +1.1
187,378 + EX31_RS11270 0.59 -1.1
187,379 - EX31_RS11270 0.59 -1.2
187,379 - EX31_RS11270 0.59 -0.8
187,382 + EX31_RS11270 0.59 +1.3
187,382 + EX31_RS11270 0.59 -0.3
187,382 + EX31_RS11270 0.59 +0.8
187,382 + EX31_RS11270 0.59 +0.0
187,467 - EX31_RS11270 0.65 -0.8
187,467 - EX31_RS11270 0.65 -0.0
187,534 + EX31_RS11270 0.69 +1.2
187,534 + EX31_RS11270 0.69 +0.2
187,534 + EX31_RS11270 0.69 -0.4
187,534 + EX31_RS11270 0.69 -0.4
187,534 + EX31_RS11270 0.69 -0.5
187,534 + EX31_RS11270 0.69 -0.7
187,535 - EX31_RS11270 0.69 -1.2
187,535 - EX31_RS11270 0.69 -0.1
187,535 - EX31_RS11270 0.69 -1.3
187,535 - EX31_RS11270 0.69 +0.4
187,535 - EX31_RS11270 0.69 +0.5
187,600 + EX31_RS11270 0.73 +0.3
187,601 - EX31_RS11270 0.73 +0.5
187,850 - EX31_RS11270 0.88 +1.5
187,890 - -1.1
187,892 - -1.1
187,905 - +0.8
187,917 - +0.1
187,926 - +0.4
187,947 - -0.2
187,949 - +0.5
188,033 + -0.1
188,034 - +0.5
188,037 + +2.4
188,038 - +0.2
188,038 - +0.3
188,038 - -0.8
188,082 - +0.5
188,091 + +1.1
188,092 - -0.4
188,092 - -0.3
188,095 + -2.2
188,095 + -0.4
188,200 + +0.0
188,200 + -1.0
188,220 + +0.5
188,286 + +1.6
188,287 - EX31_RS11275 0.10 -0.7
188,344 + EX31_RS11275 0.16 +0.8
188,344 + EX31_RS11275 0.16 +0.3
188,384 - EX31_RS11275 0.20 +1.8
188,397 + EX31_RS11275 0.22 -0.5
188,398 - EX31_RS11275 0.22 -0.4
188,398 - EX31_RS11275 0.22 -0.4
188,398 - EX31_RS11275 0.22 +0.8
188,418 + EX31_RS11275 0.24 +1.1
188,419 - EX31_RS11275 0.24 +0.2
188,419 - EX31_RS11275 0.24 -0.8
188,419 - EX31_RS11275 0.24 +0.2
188,427 + EX31_RS11275 0.25 -0.3
188,427 + EX31_RS11275 0.25 +0.8
188,470 + EX31_RS11275 0.29 +3.0
188,471 - EX31_RS11275 0.29 -0.1
188,471 - EX31_RS11275 0.29 +2.1
188,471 - EX31_RS11275 0.29 -0.5
188,642 - EX31_RS11275 0.47 +0.8
188,755 - EX31_RS11275 0.59 -0.1
188,926 - EX31_RS11275 0.77 +1.2
188,926 - EX31_RS11275 0.77 -0.2
188,926 - EX31_RS11275 0.77 +0.3
188,935 + EX31_RS11275 0.78 +1.6

Or see this region's nucleotide sequence