Strain Fitness in Rahnella sp. WP5 around EX31_RS09970

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09965 and EX31_RS09970 are separated by 3 nucleotidesEX31_RS09970 and EX31_RS09975 are separated by 44 nucleotides EX31_RS09965: EX31_RS09965 - anthranilate phosphoribosyltransferase, at 202,138 to 203,151 _RS09965 EX31_RS09970: EX31_RS09970 - bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF, at 203,155 to 204,519 _RS09970 EX31_RS09975: EX31_RS09975 - tryptophan synthase subunit beta, at 204,564 to 205,754 _RS09975 Position (kb) 203 204 205Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 202.217 kb on + strandat 202.218 kb on - strandat 202.218 kb on - strandat 202.419 kb on + strand, within EX31_RS09965at 202.419 kb on + strand, within EX31_RS09965at 202.420 kb on - strand, within EX31_RS09965at 202.518 kb on - strand, within EX31_RS09965at 202.647 kb on + strand, within EX31_RS09965at 202.732 kb on + strand, within EX31_RS09965at 202.783 kb on + strand, within EX31_RS09965at 202.874 kb on + strand, within EX31_RS09965at 202.882 kb on + strand, within EX31_RS09965at 202.882 kb on + strand, within EX31_RS09965at 202.882 kb on + strand, within EX31_RS09965at 202.914 kb on + strand, within EX31_RS09965at 202.914 kb on + strand, within EX31_RS09965at 202.918 kb on + strand, within EX31_RS09965at 202.918 kb on + strand, within EX31_RS09965at 202.926 kb on - strand, within EX31_RS09965at 202.979 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.982 kb on + strand, within EX31_RS09965at 202.983 kb on - strand, within EX31_RS09965at 202.983 kb on - strand, within EX31_RS09965at 202.983 kb on - strand, within EX31_RS09965at 202.983 kb on - strand, within EX31_RS09965at 202.989 kb on + strand, within EX31_RS09965at 203.116 kb on + strandat 203.150 kb on - strandat 203.218 kb on - strandat 203.255 kb on + strandat 203.255 kb on + strandat 203.255 kb on + strandat 203.255 kb on + strandat 203.255 kb on + strandat 203.256 kb on - strandat 203.256 kb on - strandat 203.256 kb on - strandat 203.278 kb on + strandat 203.278 kb on + strandat 203.278 kb on + strandat 203.278 kb on + strandat 203.399 kb on - strand, within EX31_RS09970at 203.399 kb on - strand, within EX31_RS09970at 203.420 kb on + strand, within EX31_RS09970at 203.434 kb on + strand, within EX31_RS09970at 203.522 kb on - strand, within EX31_RS09970at 203.596 kb on + strand, within EX31_RS09970at 203.596 kb on + strand, within EX31_RS09970at 203.596 kb on + strand, within EX31_RS09970at 203.596 kb on + strand, within EX31_RS09970at 203.596 kb on + strand, within EX31_RS09970at 203.597 kb on - strand, within EX31_RS09970at 203.628 kb on + strand, within EX31_RS09970at 203.811 kb on + strand, within EX31_RS09970at 203.811 kb on + strand, within EX31_RS09970at 203.811 kb on + strand, within EX31_RS09970at 203.811 kb on + strand, within EX31_RS09970at 203.812 kb on - strand, within EX31_RS09970at 203.814 kb on + strand, within EX31_RS09970at 203.814 kb on + strand, within EX31_RS09970at 203.814 kb on + strand, within EX31_RS09970at 203.814 kb on + strand, within EX31_RS09970at 203.815 kb on - strand, within EX31_RS09970at 204.079 kb on + strand, within EX31_RS09970at 204.079 kb on + strand, within EX31_RS09970at 204.079 kb on + strand, within EX31_RS09970at 204.079 kb on + strand, within EX31_RS09970at 204.080 kb on - strand, within EX31_RS09970at 204.080 kb on - strand, within EX31_RS09970at 204.080 kb on - strand, within EX31_RS09970at 204.080 kb on - strand, within EX31_RS09970at 204.137 kb on + strand, within EX31_RS09970at 204.137 kb on + strand, within EX31_RS09970at 204.181 kb on + strand, within EX31_RS09970at 204.181 kb on + strand, within EX31_RS09970at 204.181 kb on + strand, within EX31_RS09970at 204.364 kb on - strand, within EX31_RS09970at 204.393 kb on + strandat 204.393 kb on + strandat 204.495 kb on - strandat 204.517 kb on + strandat 204.517 kb on + strandat 204.571 kb on + strandat 204.583 kb on - strandat 204.606 kb on + strandat 204.606 kb on + strandat 204.606 kb on + strandat 204.606 kb on + strandat 204.607 kb on - strandat 204.703 kb on + strand, within EX31_RS09975at 204.714 kb on + strand, within EX31_RS09975at 204.746 kb on + strand, within EX31_RS09975at 204.780 kb on + strand, within EX31_RS09975at 204.780 kb on + strand, within EX31_RS09975at 204.780 kb on + strand, within EX31_RS09975at 204.781 kb on - strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.957 kb on + strand, within EX31_RS09975at 204.958 kb on - strand, within EX31_RS09975at 204.958 kb on - strand, within EX31_RS09975at 204.958 kb on - strand, within EX31_RS09975at 205.040 kb on + strand, within EX31_RS09975at 205.040 kb on + strand, within EX31_RS09975at 205.070 kb on + strand, within EX31_RS09975at 205.101 kb on + strand, within EX31_RS09975at 205.116 kb on + strand, within EX31_RS09975at 205.116 kb on + strand, within EX31_RS09975at 205.179 kb on - strand, within EX31_RS09975at 205.179 kb on - strand, within EX31_RS09975at 205.277 kb on + strand, within EX31_RS09975at 205.391 kb on + strand, within EX31_RS09975at 205.395 kb on + strand, within EX31_RS09975at 205.395 kb on + strand, within EX31_RS09975at 205.395 kb on + strand, within EX31_RS09975at 205.396 kb on - strand, within EX31_RS09975

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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202,217 + -1.7
202,218 - -2.4
202,218 - -1.6
202,419 + EX31_RS09965 0.28 +0.1
202,419 + EX31_RS09965 0.28 -2.6
202,420 - EX31_RS09965 0.28 +1.7
202,518 - EX31_RS09965 0.37 -2.3
202,647 + EX31_RS09965 0.50 -2.3
202,732 + EX31_RS09965 0.59 -3.7
202,783 + EX31_RS09965 0.64 -1.4
202,874 + EX31_RS09965 0.73 -1.9
202,882 + EX31_RS09965 0.73 -0.9
202,882 + EX31_RS09965 0.73 -1.6
202,882 + EX31_RS09965 0.73 -2.7
202,914 + EX31_RS09965 0.77 -3.0
202,914 + EX31_RS09965 0.77 -0.6
202,918 + EX31_RS09965 0.77 -1.9
202,918 + EX31_RS09965 0.77 -2.9
202,926 - EX31_RS09965 0.78 -1.9
202,979 + EX31_RS09965 0.83 -1.1
202,982 + EX31_RS09965 0.83 -1.4
202,982 + EX31_RS09965 0.83 -2.7
202,982 + EX31_RS09965 0.83 -2.1
202,982 + EX31_RS09965 0.83 -1.9
202,982 + EX31_RS09965 0.83 -3.2
202,982 + EX31_RS09965 0.83 -2.7
202,982 + EX31_RS09965 0.83 -2.9
202,982 + EX31_RS09965 0.83 +0.1
202,983 - EX31_RS09965 0.83 -1.6
202,983 - EX31_RS09965 0.83 -1.1
202,983 - EX31_RS09965 0.83 -2.7
202,983 - EX31_RS09965 0.83 -2.7
202,989 + EX31_RS09965 0.84 -1.4
203,116 + -2.4
203,150 - -3.0
203,218 - -2.9
203,255 + -1.3
203,255 + -0.3
203,255 + -0.3
203,255 + +0.7
203,255 + -2.2
203,256 - -0.3
203,256 - -2.9
203,256 - -3.0
203,278 + -2.9
203,278 + -0.9
203,278 + -3.4
203,278 + +0.1
203,399 - EX31_RS09970 0.18 -1.7
203,399 - EX31_RS09970 0.18 +0.7
203,420 + EX31_RS09970 0.19 -0.9
203,434 + EX31_RS09970 0.20 -1.6
203,522 - EX31_RS09970 0.27 -3.2
203,596 + EX31_RS09970 0.32 -0.3
203,596 + EX31_RS09970 0.32 -1.7
203,596 + EX31_RS09970 0.32 -3.0
203,596 + EX31_RS09970 0.32 -2.9
203,596 + EX31_RS09970 0.32 -1.7
203,597 - EX31_RS09970 0.32 -1.4
203,628 + EX31_RS09970 0.35 -2.8
203,811 + EX31_RS09970 0.48 -1.4
203,811 + EX31_RS09970 0.48 -2.3
203,811 + EX31_RS09970 0.48 -2.4
203,811 + EX31_RS09970 0.48 -2.5
203,812 - EX31_RS09970 0.48 -1.9
203,814 + EX31_RS09970 0.48 -2.5
203,814 + EX31_RS09970 0.48 -2.6
203,814 + EX31_RS09970 0.48 -2.3
203,814 + EX31_RS09970 0.48 -0.6
203,815 - EX31_RS09970 0.48 -2.3
204,079 + EX31_RS09970 0.68 -2.9
204,079 + EX31_RS09970 0.68 -1.1
204,079 + EX31_RS09970 0.68 -2.7
204,079 + EX31_RS09970 0.68 -2.1
204,080 - EX31_RS09970 0.68 -1.6
204,080 - EX31_RS09970 0.68 -1.7
204,080 - EX31_RS09970 0.68 -2.5
204,080 - EX31_RS09970 0.68 -1.4
204,137 + EX31_RS09970 0.72 -3.7
204,137 + EX31_RS09970 0.72 -2.9
204,181 + EX31_RS09970 0.75 -2.3
204,181 + EX31_RS09970 0.75 -1.1
204,181 + EX31_RS09970 0.75 -2.4
204,364 - EX31_RS09970 0.89 -1.6
204,393 + -1.6
204,393 + -2.9
204,495 - -0.6
204,517 + -0.2
204,517 + -2.4
204,571 + -1.7
204,583 - -1.4
204,606 + -2.0
204,606 + -1.1
204,606 + -3.5
204,606 + -2.0
204,607 - -3.0
204,703 + EX31_RS09975 0.12 -1.3
204,714 + EX31_RS09975 0.13 -2.9
204,746 + EX31_RS09975 0.15 -3.0
204,780 + EX31_RS09975 0.18 -2.1
204,780 + EX31_RS09975 0.18 -1.4
204,780 + EX31_RS09975 0.18 -1.1
204,781 - EX31_RS09975 0.18 +0.1
204,957 + EX31_RS09975 0.33 -2.4
204,957 + EX31_RS09975 0.33 -5.3
204,957 + EX31_RS09975 0.33 -0.9
204,957 + EX31_RS09975 0.33 -0.6
204,957 + EX31_RS09975 0.33 -1.6
204,957 + EX31_RS09975 0.33 -2.4
204,957 + EX31_RS09975 0.33 -2.2
204,958 - EX31_RS09975 0.33 -2.0
204,958 - EX31_RS09975 0.33 -1.6
204,958 - EX31_RS09975 0.33 -1.6
205,040 + EX31_RS09975 0.40 -1.9
205,040 + EX31_RS09975 0.40 -3.0
205,070 + EX31_RS09975 0.42 -2.2
205,101 + EX31_RS09975 0.45 -2.7
205,116 + EX31_RS09975 0.46 -1.3
205,116 + EX31_RS09975 0.46 -2.8
205,179 - EX31_RS09975 0.52 -0.4
205,179 - EX31_RS09975 0.52 -1.4
205,277 + EX31_RS09975 0.60 -2.7
205,391 + EX31_RS09975 0.69 -2.4
205,395 + EX31_RS09975 0.70 +0.1
205,395 + EX31_RS09975 0.70 -1.4
205,395 + EX31_RS09975 0.70 -1.4
205,396 - EX31_RS09975 0.70 -3.4

Or see this region's nucleotide sequence