Strain Fitness in Rahnella sp. WP5 around EX31_RS09715

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09710 and EX31_RS09715 are separated by 156 nucleotidesEX31_RS09715 and EX31_RS09720 overlap by 4 nucleotides EX31_RS09710: EX31_RS09710 - LysR family transcriptional regulator, at 142,241 to 143,164 _RS09710 EX31_RS09715: EX31_RS09715 - M20 family metallopeptidase, at 143,321 to 144,742 _RS09715 EX31_RS09720: EX31_RS09720 - MFS transporter, at 144,739 to 146,022 _RS09720 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1 2 3at 142.364 kb on - strand, within EX31_RS09710at 142.364 kb on - strand, within EX31_RS09710at 142.364 kb on - strand, within EX31_RS09710at 142.364 kb on - strand, within EX31_RS09710at 142.385 kb on - strand, within EX31_RS09710at 142.425 kb on + strand, within EX31_RS09710at 142.425 kb on + strand, within EX31_RS09710at 142.426 kb on - strand, within EX31_RS09710at 142.426 kb on - strand, within EX31_RS09710at 142.429 kb on + strand, within EX31_RS09710at 142.429 kb on + strand, within EX31_RS09710at 143.038 kb on + strand, within EX31_RS09710at 143.091 kb on - strandat 143.091 kb on - strandat 143.180 kb on + strandat 143.180 kb on + strandat 143.180 kb on + strandat 143.199 kb on + strandat 143.200 kb on - strandat 143.234 kb on - strandat 143.288 kb on + strandat 143.288 kb on + strandat 143.288 kb on + strandat 143.288 kb on + strandat 143.288 kb on + strandat 143.288 kb on + strandat 143.288 kb on + strandat 143.288 kb on + strandat 143.288 kb on + strandat 143.289 kb on - strandat 143.289 kb on - strandat 143.375 kb on + strandat 143.376 kb on - strandat 143.404 kb on + strandat 143.404 kb on + strandat 143.454 kb on - strandat 143.551 kb on + strand, within EX31_RS09715at 143.552 kb on - strand, within EX31_RS09715at 143.584 kb on - strand, within EX31_RS09715at 143.722 kb on + strand, within EX31_RS09715at 143.722 kb on + strand, within EX31_RS09715at 143.725 kb on + strand, within EX31_RS09715at 143.982 kb on - strand, within EX31_RS09715at 144.072 kb on + strand, within EX31_RS09715at 144.089 kb on - strand, within EX31_RS09715at 144.215 kb on + strand, within EX31_RS09715at 144.215 kb on + strand, within EX31_RS09715at 144.216 kb on - strand, within EX31_RS09715at 144.216 kb on - strand, within EX31_RS09715at 144.226 kb on + strand, within EX31_RS09715at 144.312 kb on + strand, within EX31_RS09715at 144.715 kb on + strandat 144.715 kb on + strandat 144.716 kb on - strandat 144.716 kb on - strandat 144.749 kb on + strandat 144.749 kb on + strandat 144.766 kb on - strandat 144.877 kb on + strand, within EX31_RS09720at 144.878 kb on - strand, within EX31_RS09720at 144.878 kb on - strand, within EX31_RS09720at 144.893 kb on - strand, within EX31_RS09720at 145.071 kb on + strand, within EX31_RS09720at 145.071 kb on + strand, within EX31_RS09720at 145.072 kb on - strand, within EX31_RS09720at 145.073 kb on + strand, within EX31_RS09720at 145.074 kb on - strand, within EX31_RS09720at 145.115 kb on + strand, within EX31_RS09720at 145.329 kb on + strand, within EX31_RS09720at 145.370 kb on + strand, within EX31_RS09720at 145.372 kb on + strand, within EX31_RS09720at 145.372 kb on + strand, within EX31_RS09720at 145.372 kb on + strand, within EX31_RS09720at 145.372 kb on + strand, within EX31_RS09720at 145.386 kb on + strand, within EX31_RS09720at 145.500 kb on + strand, within EX31_RS09720at 145.513 kb on + strand, within EX31_RS09720at 145.513 kb on + strand, within EX31_RS09720at 145.513 kb on + strand, within EX31_RS09720at 145.513 kb on + strand, within EX31_RS09720at 145.513 kb on + strand, within EX31_RS09720at 145.513 kb on + strand, within EX31_RS09720at 145.513 kb on + strand, within EX31_RS09720at 145.513 kb on + strand, within EX31_RS09720at 145.513 kb on + strand, within EX31_RS09720at 145.514 kb on - strand, within EX31_RS09720at 145.514 kb on - strand, within EX31_RS09720at 145.514 kb on - strand, within EX31_RS09720at 145.514 kb on - strand, within EX31_RS09720at 145.514 kb on - strand, within EX31_RS09720at 145.515 kb on + strand, within EX31_RS09720at 145.515 kb on + strand, within EX31_RS09720at 145.515 kb on + strand, within EX31_RS09720at 145.516 kb on - strand, within EX31_RS09720at 145.525 kb on + strand, within EX31_RS09720at 145.525 kb on + strand, within EX31_RS09720at 145.537 kb on + strand, within EX31_RS09720at 145.680 kb on + strand, within EX31_RS09720at 145.680 kb on + strand, within EX31_RS09720at 145.681 kb on - strand, within EX31_RS09720at 145.681 kb on - strand, within EX31_RS09720

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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142,364 - EX31_RS09710 0.13 -0.2
142,364 - EX31_RS09710 0.13 -0.8
142,364 - EX31_RS09710 0.13 +0.9
142,364 - EX31_RS09710 0.13 -0.9
142,385 - EX31_RS09710 0.16 +1.7
142,425 + EX31_RS09710 0.20 +0.0
142,425 + EX31_RS09710 0.20 -0.3
142,426 - EX31_RS09710 0.20 -0.3
142,426 - EX31_RS09710 0.20 -0.9
142,429 + EX31_RS09710 0.20 -1.6
142,429 + EX31_RS09710 0.20 +0.7
143,038 + EX31_RS09710 0.86 -0.7
143,091 - +1.7
143,091 - +0.5
143,180 + -1.3
143,180 + +1.0
143,180 + -1.1
143,199 + -0.1
143,200 - +1.7
143,234 - +1.6
143,288 + -1.3
143,288 + -0.7
143,288 + +0.2
143,288 + +0.6
143,288 + +0.4
143,288 + -1.0
143,288 + -0.7
143,288 + +0.7
143,288 + +0.6
143,289 - +0.1
143,289 - -0.2
143,375 + -0.4
143,376 - +1.7
143,404 + +0.5
143,404 + +0.4
143,454 - +0.4
143,551 + EX31_RS09715 0.16 -0.7
143,552 - EX31_RS09715 0.16 -1.2
143,584 - EX31_RS09715 0.18 +1.4
143,722 + EX31_RS09715 0.28 +0.4
143,722 + EX31_RS09715 0.28 +1.7
143,725 + EX31_RS09715 0.28 +0.5
143,982 - EX31_RS09715 0.46 -0.3
144,072 + EX31_RS09715 0.53 +1.5
144,089 - EX31_RS09715 0.54 -1.3
144,215 + EX31_RS09715 0.63 -1.5
144,215 + EX31_RS09715 0.63 +0.3
144,216 - EX31_RS09715 0.63 -1.1
144,216 - EX31_RS09715 0.63 +1.1
144,226 + EX31_RS09715 0.64 -1.6
144,312 + EX31_RS09715 0.70 -0.4
144,715 + +0.7
144,715 + -1.3
144,716 - +0.9
144,716 - +0.1
144,749 + +1.1
144,749 + +0.7
144,766 - -1.7
144,877 + EX31_RS09720 0.11 +1.0
144,878 - EX31_RS09720 0.11 -0.4
144,878 - EX31_RS09720 0.11 +0.1
144,893 - EX31_RS09720 0.12 +0.7
145,071 + EX31_RS09720 0.26 +0.2
145,071 + EX31_RS09720 0.26 +2.3
145,072 - EX31_RS09720 0.26 +1.7
145,073 + EX31_RS09720 0.26 -0.0
145,074 - EX31_RS09720 0.26 +1.9
145,115 + EX31_RS09720 0.29 -0.3
145,329 + EX31_RS09720 0.46 -0.1
145,370 + EX31_RS09720 0.49 -1.9
145,372 + EX31_RS09720 0.49 -1.0
145,372 + EX31_RS09720 0.49 +1.1
145,372 + EX31_RS09720 0.49 +0.7
145,372 + EX31_RS09720 0.49 -0.5
145,386 + EX31_RS09720 0.50 +0.3
145,500 + EX31_RS09720 0.59 +0.6
145,513 + EX31_RS09720 0.60 +0.0
145,513 + EX31_RS09720 0.60 +2.7
145,513 + EX31_RS09720 0.60 +2.7
145,513 + EX31_RS09720 0.60 +0.4
145,513 + EX31_RS09720 0.60 -0.9
145,513 + EX31_RS09720 0.60 -0.1
145,513 + EX31_RS09720 0.60 -0.0
145,513 + EX31_RS09720 0.60 +0.0
145,513 + EX31_RS09720 0.60 +3.3
145,514 - EX31_RS09720 0.60 +1.7
145,514 - EX31_RS09720 0.60 +0.7
145,514 - EX31_RS09720 0.60 +1.0
145,514 - EX31_RS09720 0.60 +0.1
145,514 - EX31_RS09720 0.60 -2.1
145,515 + EX31_RS09720 0.60 +0.0
145,515 + EX31_RS09720 0.60 +0.5
145,515 + EX31_RS09720 0.60 +0.1
145,516 - EX31_RS09720 0.61 -0.2
145,525 + EX31_RS09720 0.61 +0.5
145,525 + EX31_RS09720 0.61 -1.6
145,537 + EX31_RS09720 0.62 -0.4
145,680 + EX31_RS09720 0.73 +0.1
145,680 + EX31_RS09720 0.73 +1.0
145,681 - EX31_RS09720 0.73 +0.5
145,681 - EX31_RS09720 0.73 +1.7

Or see this region's nucleotide sequence