Strain Fitness in Rahnella sp. WP5

Strain Fitness in Rahnella sp. WP5 around EX31_RS04480

Experiment: Ammonium chloride (N); ShewMM media; no shaking

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Ammonium chloride (N); ShewMM media; no shaking
				remove
6,039	+	EX31_RS04475	0.26	+0.1
6,039	+	EX31_RS04475	0.26	-0.0
6,077	+	EX31_RS04475	0.30	+0.5
6,077	+	EX31_RS04475	0.30	-0.3
6,079	+	EX31_RS04475	0.30	-0.1
6,079	+	EX31_RS04475	0.30	-1.1
6,079	+	EX31_RS04475	0.30	+0.6
6,079	+	EX31_RS04475	0.30	+0.3
6,079	+	EX31_RS04475	0.30	-0.5
6,080	-	EX31_RS04475	0.30	+0.1
6,121	+	EX31_RS04475	0.35	+0.9
6,122	-	EX31_RS04475	0.35	+1.0
6,122	-	EX31_RS04475	0.35	-0.1
6,125	+	EX31_RS04475	0.36	+0.2
6,184	+	EX31_RS04475	0.43	+0.3
6,185	-	EX31_RS04475	0.43	-0.4
6,185	-	EX31_RS04475	0.43	+0.3
6,185	-	EX31_RS04475	0.43	-0.8
6,263	+	EX31_RS04475	0.52	-0.6
6,287	+	EX31_RS04475	0.55	-0.0
6,288	-	EX31_RS04475	0.55	-2.2
6,457	+	EX31_RS04475	0.75	+0.2
6,457	+	EX31_RS04475	0.75	+0.3
6,458	-	EX31_RS04475	0.75	-0.9
6,458	-	EX31_RS04475	0.75	+0.3
6,458	-	EX31_RS04475	0.75	+0.3
6,484	+	EX31_RS04475	0.78	+0.4
6,521	+	EX31_RS04475	0.82	+0.1
6,522	-	EX31_RS04475	0.82	+0.9
6,654	+			+1.0
6,655	-			+0.8
6,655	-			+0.4
6,655	-			+0.1
6,655	-			+0.7
6,655	-			+0.3
6,659	+			+0.8
6,660	-			+0.6
6,660	-			-0.2
6,713	+			+0.2
6,713	+			+0.2
6,713	+			-0.4
6,713	+			-0.2
6,713	+			+0.4
6,714	-			+0.3
6,714	-			-0.6
6,735	-			-1.4
6,735	-			+0.4
6,737	+			+0.7
6,737	+			+0.2
6,737	+			+0.7
6,737	+			+0.0
6,737	+			+0.0
6,737	+			+0.4
6,737	+			-0.3
6,737	+			-0.9
6,737	+			-0.6
6,737	+			-0.4
6,737	+			+0.1
6,737	+			+0.9
6,737	+			+1.2
6,737	+			-0.0
6,737	+			+0.3
6,737	+			+0.4
6,737	+			-0.6
6,737	+			-0.4
6,738	-			-0.4
6,738	-			+0.5
6,738	-			-0.0
6,738	-			+0.3
6,738	-			-2.0
6,738	-			+1.2
6,738	-			+0.7
6,738	-			-0.3
6,738	-			+0.3
6,738	-			-0.4
6,738	-			-0.0
6,738	-			-1.7
6,738	-			+1.2
6,738	-			+0.1
6,738	-			+0.1
6,739	+			+1.3
6,739	+			+0.0
6,739	+			-0.2
6,739	+			+0.2
6,739	+			+0.3
6,739	+			-0.2
6,739	+			+0.8
6,739	+			+0.4
6,739	+			-0.4
6,739	+			+0.6
6,739	+			-0.5
6,739	+			+0.4
6,739	+			+0.6
6,739	+			+1.2
6,740	-			+0.3
6,740	-			+0.7
6,740	-			-0.3
6,740	-			+0.0
6,740	-			-0.1
6,740	-			+0.1
6,740	-			-0.5
6,740	-			-0.4
6,740	-			-0.4
6,740	-			-0.1
6,740	-			-0.4
6,769	+			-0.7
6,769	+			-0.7
6,769	+			+0.5
6,769	+			-1.0
6,769	+			-0.4
6,769	+			+0.8
6,769	+			-0.2
6,769	+			+0.5
6,769	+			+2.2
6,769	+			+1.6
6,769	+			-0.1
6,769	+			-0.4
6,769	+			-0.9
6,770	-			-0.4
6,770	-			-0.2
6,770	-			-0.2
6,770	-			-0.5
6,770	-			+0.2
6,770	-			-0.3
6,770	-			-0.1
6,771	+			+0.2
6,771	+			+0.2
6,771	+			-0.2
6,772	-			-0.2
6,772	-			+0.2
6,772	-			-1.1
6,782	-			+0.4
6,789	+			+0.6
6,790	-			-2.9
6,790	-			+0.4
6,804	+			+0.5
6,804	+			+0.2
6,804	+			+0.3
6,805	-			-0.5
6,812	+			+0.1
6,812	+			-1.1
6,812	+			+0.0
6,812	+			-0.3
6,812	+			+0.1
6,835	+			-1.0
6,835	+			-0.9
6,837	+			-0.1
6,837	+			+0.9
6,837	+			+0.0
6,837	+			-0.7
6,837	+			-0.3
6,837	+			+0.2
6,837	+			+0.4
6,837	+			-1.3
6,837	+			+0.8
6,837	+			+0.6
6,837	+			-0.4
6,837	+			-0.2
6,838	-			+0.3
6,838	-			-0.3
6,838	-			+0.7
6,839	-			+0.1
6,864	+			+0.6
6,865	-			+0.7
6,865	-			-1.1
6,865	-			+0.7
6,885	-			+0.1
6,898	+			-0.5
6,898	+			-0.4
6,898	+			+1.4
6,899	-			+0.3
6,899	-			+0.0
6,899	-			+0.5
6,899	-			-0.9
6,903	+			+1.3
6,903	+			+0.7
6,904	-			+0.8
6,904	-			+0.8
6,950	+			+0.2
6,950	+			+1.1
6,950	+			+0.3
6,950	+			+0.6
6,951	-			+0.5
6,960	+			+0.9
6,960	+			+0.0
6,960	+			-0.0
6,961	-			-0.9
6,961	-			-1.5
6,961	-			+0.5
6,961	-			-0.1
6,979	+			-0.7
6,979	+			+0.2
6,979	+			-0.8
6,979	+			+0.2
7,033	+	EX31_RS04480	0.30	-0.9
7,033	+	EX31_RS04480	0.30	-1.1
7,033	+	EX31_RS04480	0.30	+0.2
7,033	+	EX31_RS04480	0.30	-0.5
7,034	-	EX31_RS04480	0.30	-0.1
7,034	-	EX31_RS04480	0.30	+1.0
7,034	-	EX31_RS04480	0.30	-1.8
7,146	+	EX31_RS04480	0.81	-0.4
7,181	+			+0.2
7,182	-			+0.7
7,234	+			-0.6
7,234	+			+0.9
7,234	+			-0.4
7,235	-			-0.3
7,235	-			+1.0
7,235	-			-1.0
7,235	-			+0.1
7,235	-			-0.4
7,236	+			+0.4
7,236	+			+0.2
7,236	+			-0.2
7,237	-			-0.2
7,237	-			+0.0
7,237	-			+0.5
7,297	+			-0.8
7,298	-			-0.4
7,618	+	EX31_RS04485	0.60	-0.0
7,619	-	EX31_RS04485	0.60	-0.5
7,619	-	EX31_RS04485	0.60	-0.8
7,647	+	EX31_RS04485	0.65	-0.0
7,647	+	EX31_RS04485	0.65	-0.1
7,647	+	EX31_RS04485	0.65	+0.4
7,647	+	EX31_RS04485	0.65	-0.1
7,647	+	EX31_RS04485	0.65	+0.8
7,647	+	EX31_RS04485	0.65	+2.2
7,648	-	EX31_RS04485	0.65	-0.5
7,648	-	EX31_RS04485	0.65	-1.4
7,657	-	EX31_RS04485	0.67	-1.0
7,679	+	EX31_RS04485	0.70	-0.6
7,679	+	EX31_RS04485	0.70	+1.2
7,679	+	EX31_RS04485	0.70	-0.4
7,680	-	EX31_RS04485	0.70	-1.0
7,680	-	EX31_RS04485	0.70	-1.6
7,680	-	EX31_RS04485	0.70	-0.1
7,680	-	EX31_RS04485	0.70	+0.0
7,680	-	EX31_RS04485	0.70	-0.3
7,680	-	EX31_RS04485	0.70	-1.1
7,680	-	EX31_RS04485	0.70	-0.3
7,680	-	EX31_RS04485	0.70	+1.8
7,680	-	EX31_RS04485	0.70	+0.3
7,680	-	EX31_RS04485	0.70	-1.5
7,680	-	EX31_RS04485	0.70	-0.8
7,680	-	EX31_RS04485	0.70	-0.8
7,680	-	EX31_RS04485	0.70	-0.1
7,680	-	EX31_RS04485	0.70	-0.0
7,688	+	EX31_RS04485	0.72	+0.8
7,688	+	EX31_RS04485	0.72	+0.3
7,688	+	EX31_RS04485	0.72	-1.5
7,688	+	EX31_RS04485	0.72	-0.0
7,688	+	EX31_RS04485	0.72	+0.2
7,688	+	EX31_RS04485	0.72	-0.1
7,688	+	EX31_RS04485	0.72	-0.4
7,688	+	EX31_RS04485	0.72	-0.3
7,689	-	EX31_RS04485	0.72	-1.4
7,689	-	EX31_RS04485	0.72	+0.3
7,759	-	EX31_RS04485	0.83	-0.3
7,759	-	EX31_RS04485	0.83	-0.2
7,810	+			-0.2
7,810	+			+0.7
7,810	+			-0.2
7,810	+			-0.2
7,811	-			-0.8
7,811	-			-0.5
7,814	+			+1.0
7,814	+			-1.0
7,814	+			-0.0
7,815	-			+0.2
7,815	-			-0.6
7,815	-			+0.2
7,821	+			+0.3
7,821	+			-0.4
7,850	+			-0.7
7,861	+			-0.2
7,861	+			-1.4
7,862	-			-0.3
7,862	-			-0.0
7,862	-			+1.4
7,862	-			-1.8
7,868	+			+0.2
7,869	-			+1.0
7,869	-			-0.6
7,907	+			-0.6
7,907	+			-0.3
7,907	+			+1.0
7,908	-			+0.4
7,908	-			-0.6
7,932	+			-0.3
7,932	+			+0.6
7,933	-			+0.2
7,933	-			-0.4
7,933	-			+0.5
7,986	-			+1.2
8,003	+			+1.9
8,003	+			+0.2
8,004	-			-0.3
8,024	+			+0.4
8,024	+			-0.0
8,024	+			+0.9
8,025	-			+0.6
8,027	+			+0.1
8,027	+			-2.5
8,027	+			-0.2
8,027	+			+0.6
8,028	-			-0.1
8,028	-			-0.1
8,052	+			-1.8
8,053	-			-0.2
8,058	+			-0.9
8,059	-			-0.7
8,059	-			+0.3
8,059	-			+0.6
8,059	-			-0.4
8,075	-			+0.5
8,075	-			+0.8
8,075	-			-0.3
8,075	-			+1.5
8,186	+	EX31_RS04490	0.63	-1.3

Or see this region's nucleotide sequence