Strain Fitness in Rahnella sp. WP5 around EX31_RS02000

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01995 and EX31_RS02000 are separated by 49 nucleotidesEX31_RS02000 and EX31_RS02005 are separated by 547 nucleotides EX31_RS01995: EX31_RS01995 - type VI secretion protein ImpA, at 436,319 to 437,704 _RS01995 EX31_RS02000: EX31_RS02000 - hypothetical protein, at 437,754 to 438,224 _RS02000 EX31_RS02005: EX31_RS02005 - cytochrome ubiquinol oxidase subunit I, at 438,772 to 440,196 _RS02005 Position (kb) 437 438 439Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 436.795 kb on + strand, within EX31_RS01995at 436.796 kb on - strand, within EX31_RS01995at 436.810 kb on + strand, within EX31_RS01995at 436.810 kb on + strand, within EX31_RS01995at 436.832 kb on - strand, within EX31_RS01995at 436.832 kb on - strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.928 kb on + strand, within EX31_RS01995at 436.929 kb on - strand, within EX31_RS01995at 436.929 kb on - strand, within EX31_RS01995at 437.075 kb on + strand, within EX31_RS01995at 437.158 kb on + strand, within EX31_RS01995at 437.158 kb on + strand, within EX31_RS01995at 437.158 kb on + strand, within EX31_RS01995at 437.159 kb on - strand, within EX31_RS01995at 437.159 kb on - strand, within EX31_RS01995at 437.159 kb on - strand, within EX31_RS01995at 437.284 kb on - strand, within EX31_RS01995at 437.284 kb on - strand, within EX31_RS01995at 437.356 kb on + strand, within EX31_RS01995at 437.415 kb on + strand, within EX31_RS01995at 437.465 kb on + strand, within EX31_RS01995at 437.465 kb on + strand, within EX31_RS01995at 437.465 kb on + strand, within EX31_RS01995at 437.465 kb on + strand, within EX31_RS01995at 437.466 kb on - strand, within EX31_RS01995at 437.466 kb on - strand, within EX31_RS01995at 437.642 kb on + strandat 437.642 kb on + strandat 437.642 kb on + strandat 437.642 kb on + strandat 437.642 kb on + strandat 437.643 kb on - strandat 437.643 kb on - strandat 437.643 kb on - strandat 437.737 kb on + strandat 437.737 kb on + strandat 437.737 kb on + strandat 437.743 kb on - strandat 437.753 kb on + strandat 437.753 kb on + strandat 437.753 kb on + strandat 437.753 kb on + strandat 437.754 kb on - strandat 437.754 kb on - strandat 437.754 kb on - strandat 437.822 kb on + strand, within EX31_RS02000at 437.906 kb on + strand, within EX31_RS02000at 437.927 kb on + strand, within EX31_RS02000at 437.927 kb on + strand, within EX31_RS02000at 437.928 kb on - strand, within EX31_RS02000at 437.980 kb on + strand, within EX31_RS02000at 437.980 kb on + strand, within EX31_RS02000at 437.980 kb on + strand, within EX31_RS02000at 437.981 kb on - strand, within EX31_RS02000at 438.024 kb on + strand, within EX31_RS02000at 438.024 kb on + strand, within EX31_RS02000at 438.025 kb on - strand, within EX31_RS02000at 438.028 kb on + strand, within EX31_RS02000at 438.028 kb on + strand, within EX31_RS02000at 438.028 kb on + strand, within EX31_RS02000at 438.028 kb on + strand, within EX31_RS02000at 438.028 kb on + strand, within EX31_RS02000at 438.028 kb on + strand, within EX31_RS02000at 438.030 kb on + strand, within EX31_RS02000at 438.030 kb on + strand, within EX31_RS02000at 438.031 kb on - strand, within EX31_RS02000at 438.180 kb on - strandat 438.205 kb on + strandat 438.205 kb on + strandat 438.214 kb on + strandat 438.214 kb on + strandat 438.214 kb on + strandat 438.214 kb on + strandat 438.215 kb on - strandat 438.272 kb on - strandat 438.638 kb on + strandat 438.639 kb on - strandat 438.639 kb on - strandat 438.639 kb on - strandat 438.705 kb on + strandat 438.705 kb on + strandat 438.705 kb on + strandat 438.705 kb on + strandat 438.705 kb on + strandat 438.705 kb on + strandat 438.705 kb on + strandat 438.705 kb on + strandat 438.705 kb on + strandat 438.706 kb on - strandat 438.706 kb on - strandat 438.706 kb on - strandat 438.706 kb on - strandat 438.706 kb on - strandat 438.771 kb on + strandat 438.771 kb on + strandat 438.772 kb on - strandat 438.772 kb on - strandat 438.772 kb on - strandat 438.772 kb on - strandat 438.772 kb on - strandat 438.772 kb on - strandat 438.849 kb on + strandat 438.849 kb on + strandat 438.852 kb on + strandat 438.853 kb on - strandat 438.920 kb on - strand, within EX31_RS02005at 439.000 kb on + strand, within EX31_RS02005at 439.001 kb on - strand, within EX31_RS02005at 439.023 kb on + strand, within EX31_RS02005at 439.023 kb on + strand, within EX31_RS02005at 439.069 kb on + strand, within EX31_RS02005at 439.069 kb on + strand, within EX31_RS02005at 439.069 kb on + strand, within EX31_RS02005at 439.069 kb on + strand, within EX31_RS02005

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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436,795 + EX31_RS01995 0.34 -0.4
436,796 - EX31_RS01995 0.34 -1.4
436,810 + EX31_RS01995 0.35 +0.6
436,810 + EX31_RS01995 0.35 +0.8
436,832 - EX31_RS01995 0.37 -0.6
436,832 - EX31_RS01995 0.37 +1.2
436,928 + EX31_RS01995 0.44 +1.7
436,928 + EX31_RS01995 0.44 +1.1
436,928 + EX31_RS01995 0.44 -1.3
436,928 + EX31_RS01995 0.44 -0.2
436,928 + EX31_RS01995 0.44 +0.0
436,928 + EX31_RS01995 0.44 -0.6
436,928 + EX31_RS01995 0.44 -0.2
436,928 + EX31_RS01995 0.44 -0.4
436,929 - EX31_RS01995 0.44 +0.3
436,929 - EX31_RS01995 0.44 -1.3
437,075 + EX31_RS01995 0.55 -0.3
437,158 + EX31_RS01995 0.61 +1.7
437,158 + EX31_RS01995 0.61 -1.3
437,158 + EX31_RS01995 0.61 +1.0
437,159 - EX31_RS01995 0.61 +0.9
437,159 - EX31_RS01995 0.61 -0.3
437,159 - EX31_RS01995 0.61 +0.9
437,284 - EX31_RS01995 0.70 +1.7
437,284 - EX31_RS01995 0.70 +0.3
437,356 + EX31_RS01995 0.75 -0.5
437,415 + EX31_RS01995 0.79 +2.9
437,465 + EX31_RS01995 0.83 +0.4
437,465 + EX31_RS01995 0.83 -1.4
437,465 + EX31_RS01995 0.83 -0.7
437,465 + EX31_RS01995 0.83 +0.5
437,466 - EX31_RS01995 0.83 -0.2
437,466 - EX31_RS01995 0.83 -0.2
437,642 + -0.3
437,642 + -1.2
437,642 + +1.5
437,642 + +0.8
437,642 + +0.0
437,643 - +0.0
437,643 - -1.2
437,643 - +1.9
437,737 + +1.3
437,737 + -3.2
437,737 + -1.1
437,743 - -0.6
437,753 + +1.2
437,753 + +1.2
437,753 + +0.2
437,753 + -2.8
437,754 - -0.4
437,754 - +1.4
437,754 - -0.9
437,822 + EX31_RS02000 0.14 -0.5
437,906 + EX31_RS02000 0.32 +0.9
437,927 + EX31_RS02000 0.37 -0.4
437,927 + EX31_RS02000 0.37 -0.0
437,928 - EX31_RS02000 0.37 -0.2
437,980 + EX31_RS02000 0.48 +1.4
437,980 + EX31_RS02000 0.48 +1.7
437,980 + EX31_RS02000 0.48 +2.3
437,981 - EX31_RS02000 0.48 +0.6
438,024 + EX31_RS02000 0.57 +1.2
438,024 + EX31_RS02000 0.57 +0.9
438,025 - EX31_RS02000 0.58 -1.1
438,028 + EX31_RS02000 0.58 +1.0
438,028 + EX31_RS02000 0.58 -0.3
438,028 + EX31_RS02000 0.58 +0.6
438,028 + EX31_RS02000 0.58 +0.6
438,028 + EX31_RS02000 0.58 +0.3
438,028 + EX31_RS02000 0.58 +0.3
438,030 + EX31_RS02000 0.59 +1.7
438,030 + EX31_RS02000 0.59 -0.7
438,031 - EX31_RS02000 0.59 -1.3
438,180 - -0.2
438,205 + -1.1
438,205 + +1.3
438,214 + -0.5
438,214 + +1.2
438,214 + +1.2
438,214 + -0.1
438,215 - -1.2
438,272 - -1.2
438,638 + +0.3
438,639 - +0.7
438,639 - -0.2
438,639 - -2.1
438,705 + -0.2
438,705 + -1.8
438,705 + +1.4
438,705 + +0.9
438,705 + +0.0
438,705 + +0.3
438,705 + +1.4
438,705 + -0.2
438,705 + +0.2
438,706 - -2.3
438,706 - +0.9
438,706 - -0.8
438,706 - +0.2
438,706 - -0.7
438,771 + +0.9
438,771 + +0.3
438,772 - -0.3
438,772 - +0.9
438,772 - -0.5
438,772 - +0.6
438,772 - -0.4
438,772 - +1.7
438,849 + +0.8
438,849 + +0.6
438,852 + -0.7
438,853 - +0.6
438,920 - EX31_RS02005 0.10 -0.1
439,000 + EX31_RS02005 0.16 +0.8
439,001 - EX31_RS02005 0.16 +0.2
439,023 + EX31_RS02005 0.18 +0.8
439,023 + EX31_RS02005 0.18 -0.3
439,069 + EX31_RS02005 0.21 +0.7
439,069 + EX31_RS02005 0.21 +0.1
439,069 + EX31_RS02005 0.21 -0.7
439,069 + EX31_RS02005 0.21 -3.1

Or see this region's nucleotide sequence