Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03848 and CCNA_03849 are separated by 144 nucleotides CCNA_03849 and CCNA_03850 are separated by 7 nucleotides CCNA_03850 and CCNA_03851 are separated by 12 nucleotides
CCNA_03848: CCNA_03848 - ATP-grasp domain protein, at 4,013,963 to 4,014,820
_03848
CCNA_03849: CCNA_03849 - fructokinase, at 4,014,965 to 4,015,954
_03849
CCNA_03850: CCNA_03850 - imidazoleglycerol-phosphate dehydratase, at 4,015,962 to 4,016,552
_03850
CCNA_03851: CCNA_03851 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 4,016,565 to 4,017,206
_03851
Position (kb)
4014
4015
4016 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4014.003 kb on + strand at 4014.007 kb on + strand at 4014.013 kb on - strand at 4014.014 kb on + strand at 4014.014 kb on + strand at 4014.015 kb on - strand at 4014.069 kb on - strand, within CCNA_03848 at 4014.069 kb on - strand, within CCNA_03848 at 4014.086 kb on + strand, within CCNA_03848 at 4014.089 kb on - strand, within CCNA_03848 at 4014.101 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.107 kb on + strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.115 kb on - strand, within CCNA_03848 at 4014.133 kb on + strand, within CCNA_03848 at 4014.155 kb on + strand, within CCNA_03848 at 4014.162 kb on - strand, within CCNA_03848 at 4014.231 kb on + strand, within CCNA_03848 at 4014.312 kb on + strand, within CCNA_03848 at 4014.312 kb on + strand, within CCNA_03848 at 4014.315 kb on - strand, within CCNA_03848 at 4014.317 kb on + strand, within CCNA_03848 at 4014.323 kb on + strand, within CCNA_03848 at 4014.323 kb on + strand, within CCNA_03848 at 4014.398 kb on - strand, within CCNA_03848 at 4014.410 kb on - strand, within CCNA_03848 at 4014.416 kb on + strand, within CCNA_03848 at 4014.441 kb on - strand, within CCNA_03848 at 4014.485 kb on - strand, within CCNA_03848 at 4014.523 kb on + strand, within CCNA_03848 at 4014.523 kb on + strand, within CCNA_03848 at 4014.531 kb on - strand, within CCNA_03848 at 4014.545 kb on + strand, within CCNA_03848 at 4014.592 kb on - strand, within CCNA_03848 at 4014.594 kb on + strand, within CCNA_03848 at 4014.602 kb on - strand, within CCNA_03848 at 4014.636 kb on + strand, within CCNA_03848 at 4014.641 kb on + strand, within CCNA_03848 at 4014.643 kb on - strand, within CCNA_03848 at 4014.644 kb on - strand, within CCNA_03848 at 4014.644 kb on - strand, within CCNA_03848 at 4014.670 kb on + strand, within CCNA_03848 at 4014.673 kb on - strand, within CCNA_03848 at 4014.684 kb on + strand, within CCNA_03848 at 4014.684 kb on + strand, within CCNA_03848 at 4014.698 kb on - strand, within CCNA_03848 at 4014.703 kb on - strand, within CCNA_03848 at 4014.705 kb on - strand, within CCNA_03848 at 4014.715 kb on + strand, within CCNA_03848 at 4014.744 kb on + strand at 4014.759 kb on + strand at 4014.759 kb on + strand at 4014.792 kb on + strand at 4014.811 kb on - strand at 4014.836 kb on + strand at 4014.836 kb on + strand at 4014.836 kb on + strand at 4014.836 kb on + strand at 4014.841 kb on + strand at 4014.844 kb on - strand at 4014.844 kb on - strand at 4014.844 kb on - strand at 4014.844 kb on - strand at 4014.844 kb on - strand at 4014.844 kb on - strand at 4014.844 kb on - strand at 4014.844 kb on - strand at 4014.854 kb on - strand at 4014.859 kb on + strand at 4014.863 kb on - strand at 4014.867 kb on + strand at 4014.880 kb on - strand at 4014.930 kb on - strand at 4014.935 kb on + strand at 4015.033 kb on + strand at 4015.044 kb on + strand at 4015.047 kb on - strand at 4015.060 kb on - strand at 4015.065 kb on - strand, within CCNA_03849 at 4015.065 kb on - strand, within CCNA_03849 at 4015.100 kb on + strand, within CCNA_03849 at 4015.103 kb on - strand, within CCNA_03849 at 4015.141 kb on - strand, within CCNA_03849 at 4015.193 kb on + strand, within CCNA_03849 at 4015.312 kb on - strand, within CCNA_03849 at 4015.364 kb on - strand, within CCNA_03849 at 4015.368 kb on + strand, within CCNA_03849 at 4015.373 kb on + strand, within CCNA_03849 at 4015.373 kb on + strand, within CCNA_03849 at 4015.394 kb on + strand, within CCNA_03849 at 4015.428 kb on - strand, within CCNA_03849 at 4015.518 kb on + strand, within CCNA_03849 at 4015.526 kb on - strand, within CCNA_03849 at 4015.565 kb on + strand, within CCNA_03849 at 4015.565 kb on + strand, within CCNA_03849 at 4015.565 kb on + strand, within CCNA_03849 at 4015.575 kb on - strand, within CCNA_03849 at 4015.606 kb on - strand, within CCNA_03849 at 4015.606 kb on - strand, within CCNA_03849 at 4015.613 kb on + strand, within CCNA_03849 at 4015.619 kb on - strand, within CCNA_03849 at 4015.638 kb on - strand, within CCNA_03849 at 4015.638 kb on - strand, within CCNA_03849 at 4015.669 kb on + strand at 4015.686 kb on - strand, within CCNA_03849 at 4015.904 kb on - strand at 4015.972 kb on + strand at 4015.972 kb on + strand at 4015.972 kb on + strand at 4015.972 kb on + strand at 4015.998 kb on - strand at 4016.006 kb on + strand at 4016.064 kb on + strand, within CCNA_03850 at 4016.074 kb on + strand, within CCNA_03850 at 4016.082 kb on + strand, within CCNA_03850 at 4016.082 kb on + strand, within CCNA_03850 at 4016.087 kb on - strand, within CCNA_03850 at 4016.107 kb on + strand, within CCNA_03850 at 4016.129 kb on - strand, within CCNA_03850 at 4016.156 kb on + strand, within CCNA_03850 at 4016.163 kb on + strand, within CCNA_03850 at 4016.163 kb on + strand, within CCNA_03850 at 4016.189 kb on - strand, within CCNA_03850 at 4016.205 kb on + strand, within CCNA_03850 at 4016.205 kb on + strand, within CCNA_03850 at 4016.213 kb on - strand, within CCNA_03850 at 4016.215 kb on + strand, within CCNA_03850 at 4016.215 kb on + strand, within CCNA_03850 at 4016.234 kb on - strand, within CCNA_03850 at 4016.244 kb on + strand, within CCNA_03850 at 4016.266 kb on + strand, within CCNA_03850 at 4016.266 kb on + strand, within CCNA_03850 at 4016.323 kb on + strand, within CCNA_03850 at 4016.333 kb on + strand, within CCNA_03850 at 4016.333 kb on + strand, within CCNA_03850 at 4016.333 kb on + strand, within CCNA_03850 at 4016.341 kb on - strand, within CCNA_03850 at 4016.363 kb on + strand, within CCNA_03850 at 4016.363 kb on + strand, within CCNA_03850 at 4016.393 kb on + strand, within CCNA_03850 at 4016.393 kb on + strand, within CCNA_03850 at 4016.401 kb on - strand, within CCNA_03850 at 4016.469 kb on + strand, within CCNA_03850 at 4016.469 kb on + strand, within CCNA_03850 at 4016.469 kb on + strand, within CCNA_03850 at 4016.470 kb on - strand, within CCNA_03850 at 4016.564 kb on + strand at 4016.572 kb on + strand at 4016.613 kb on + strand at 4016.622 kb on + strand at 4016.688 kb on - strand, within CCNA_03851 at 4016.701 kb on - strand, within CCNA_03851 at 4016.813 kb on + strand, within CCNA_03851 at 4016.841 kb on + strand, within CCNA_03851 at 4016.856 kb on + strand, within CCNA_03851 at 4016.875 kb on + strand, within CCNA_03851 at 4016.888 kb on - strand at 4016.944 kb on - strand, within CCNA_03851
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 4,014,003 + +1.4 4,014,007 + +0.3 4,014,013 - +0.8 4,014,014 + +1.4 4,014,014 + +0.6 4,014,015 - +0.3 4,014,069 - CCNA_03848 0.12 +0.7 4,014,069 - CCNA_03848 0.12 +1.0 4,014,086 + CCNA_03848 0.14 +0.8 4,014,089 - CCNA_03848 0.15 +0.6 4,014,101 + CCNA_03848 0.16 -2.0 4,014,107 + CCNA_03848 0.17 -0.1 4,014,107 + CCNA_03848 0.17 -0.3 4,014,107 + CCNA_03848 0.17 +1.6 4,014,107 + CCNA_03848 0.17 +1.8 4,014,107 + CCNA_03848 0.17 -0.2 4,014,107 + CCNA_03848 0.17 -0.5 4,014,107 + CCNA_03848 0.17 -0.5 4,014,107 + CCNA_03848 0.17 +0.5 4,014,107 + CCNA_03848 0.17 -1.4 4,014,107 + CCNA_03848 0.17 -0.8 4,014,107 + CCNA_03848 0.17 +2.4 4,014,107 + CCNA_03848 0.17 -0.4 4,014,107 + CCNA_03848 0.17 +1.5 4,014,107 + CCNA_03848 0.17 -2.5 4,014,107 + CCNA_03848 0.17 -0.3 4,014,107 + CCNA_03848 0.17 -0.5 4,014,107 + CCNA_03848 0.17 -2.3 4,014,115 - CCNA_03848 0.18 +0.7 4,014,115 - CCNA_03848 0.18 +0.8 4,014,115 - CCNA_03848 0.18 +0.3 4,014,115 - CCNA_03848 0.18 +1.0 4,014,115 - CCNA_03848 0.18 -0.5 4,014,115 - CCNA_03848 0.18 +0.1 4,014,115 - CCNA_03848 0.18 +0.0 4,014,115 - CCNA_03848 0.18 +1.1 4,014,115 - CCNA_03848 0.18 +0.8 4,014,115 - CCNA_03848 0.18 -0.5 4,014,115 - CCNA_03848 0.18 -0.6 4,014,115 - CCNA_03848 0.18 -0.3 4,014,115 - CCNA_03848 0.18 +1.2 4,014,115 - CCNA_03848 0.18 +0.5 4,014,115 - CCNA_03848 0.18 +1.0 4,014,115 - CCNA_03848 0.18 -0.0 4,014,115 - CCNA_03848 0.18 +0.2 4,014,115 - CCNA_03848 0.18 +0.3 4,014,115 - CCNA_03848 0.18 -0.4 4,014,115 - CCNA_03848 0.18 +0.7 4,014,115 - CCNA_03848 0.18 +0.4 4,014,115 - CCNA_03848 0.18 -0.2 4,014,115 - CCNA_03848 0.18 -0.5 4,014,115 - CCNA_03848 0.18 +0.9 4,014,133 + CCNA_03848 0.20 -0.7 4,014,155 + CCNA_03848 0.22 -0.2 4,014,162 - CCNA_03848 0.23 -0.3 4,014,231 + CCNA_03848 0.31 -1.4 4,014,312 + CCNA_03848 0.41 -0.1 4,014,312 + CCNA_03848 0.41 -1.0 4,014,315 - CCNA_03848 0.41 -0.9 4,014,317 + CCNA_03848 0.41 -0.2 4,014,323 + CCNA_03848 0.42 -0.4 4,014,323 + CCNA_03848 0.42 +2.9 4,014,398 - CCNA_03848 0.51 +2.8 4,014,410 - CCNA_03848 0.52 -0.1 4,014,416 + CCNA_03848 0.53 +2.1 4,014,441 - CCNA_03848 0.56 +0.2 4,014,485 - CCNA_03848 0.61 +0.2 4,014,523 + CCNA_03848 0.65 -0.7 4,014,523 + CCNA_03848 0.65 -1.7 4,014,531 - CCNA_03848 0.66 +0.8 4,014,545 + CCNA_03848 0.68 -0.8 4,014,592 - CCNA_03848 0.73 +0.1 4,014,594 + CCNA_03848 0.74 +0.3 4,014,602 - CCNA_03848 0.74 -1.8 4,014,636 + CCNA_03848 0.78 -1.5 4,014,641 + CCNA_03848 0.79 -0.4 4,014,643 - CCNA_03848 0.79 +0.1 4,014,644 - CCNA_03848 0.79 -0.3 4,014,644 - CCNA_03848 0.79 -0.1 4,014,670 + CCNA_03848 0.82 +0.2 4,014,673 - CCNA_03848 0.83 +0.3 4,014,684 + CCNA_03848 0.84 -0.1 4,014,684 + CCNA_03848 0.84 +0.6 4,014,698 - CCNA_03848 0.86 -2.5 4,014,703 - CCNA_03848 0.86 +0.1 4,014,705 - CCNA_03848 0.86 +0.1 4,014,715 + CCNA_03848 0.88 +0.4 4,014,744 + -0.2 4,014,759 + -0.8 4,014,759 + +0.0 4,014,792 + -0.9 4,014,811 - -0.6 4,014,836 + -2.1 4,014,836 + -0.0 4,014,836 + -1.8 4,014,836 + -2.4 4,014,841 + -0.4 4,014,844 - +1.1 4,014,844 - +0.9 4,014,844 - -1.0 4,014,844 - -0.5 4,014,844 - +0.3 4,014,844 - +0.2 4,014,844 - -1.6 4,014,844 - -0.7 4,014,854 - -0.7 4,014,859 + +0.4 4,014,863 - +0.2 4,014,867 + -1.8 4,014,880 - +1.0 4,014,930 - +1.4 4,014,935 + -0.0 4,015,033 + +0.6 4,015,044 + +0.7 4,015,047 - -0.8 4,015,060 - +1.9 4,015,065 - CCNA_03849 0.10 +1.8 4,015,065 - CCNA_03849 0.10 +0.8 4,015,100 + CCNA_03849 0.14 +2.3 4,015,103 - CCNA_03849 0.14 +0.3 4,015,141 - CCNA_03849 0.18 +2.2 4,015,193 + CCNA_03849 0.23 +2.8 4,015,312 - CCNA_03849 0.35 +1.8 4,015,364 - CCNA_03849 0.40 +2.2 4,015,368 + CCNA_03849 0.41 +2.1 4,015,373 + CCNA_03849 0.41 +2.9 4,015,373 + CCNA_03849 0.41 +2.1 4,015,394 + CCNA_03849 0.43 +2.0 4,015,428 - CCNA_03849 0.47 +0.7 4,015,518 + CCNA_03849 0.56 +1.5 4,015,526 - CCNA_03849 0.57 +0.6 4,015,565 + CCNA_03849 0.61 +2.1 4,015,565 + CCNA_03849 0.61 +3.0 4,015,565 + CCNA_03849 0.61 +2.3 4,015,575 - CCNA_03849 0.62 +1.4 4,015,606 - CCNA_03849 0.65 +1.6 4,015,606 - CCNA_03849 0.65 +2.1 4,015,613 + CCNA_03849 0.65 +2.1 4,015,619 - CCNA_03849 0.66 -1.3 4,015,638 - CCNA_03849 0.68 +0.5 4,015,638 - CCNA_03849 0.68 -1.2 4,015,669 + +2.4 4,015,686 - CCNA_03849 0.73 +1.3 4,015,904 - -1.5 4,015,972 + -3.9 4,015,972 + -3.3 4,015,972 + -2.0 4,015,972 + -2.4 4,015,998 - -2.2 4,016,006 + -1.6 4,016,064 + CCNA_03850 0.17 -3.0 4,016,074 + CCNA_03850 0.19 -2.7 4,016,082 + CCNA_03850 0.20 -2.5 4,016,082 + CCNA_03850 0.20 -1.1 4,016,087 - CCNA_03850 0.21 -3.6 4,016,107 + CCNA_03850 0.25 -2.3 4,016,129 - CCNA_03850 0.28 -2.6 4,016,156 + CCNA_03850 0.33 -1.3 4,016,163 + CCNA_03850 0.34 -0.2 4,016,163 + CCNA_03850 0.34 -3.6 4,016,189 - CCNA_03850 0.38 -2.4 4,016,205 + CCNA_03850 0.41 -1.6 4,016,205 + CCNA_03850 0.41 -0.4 4,016,213 - CCNA_03850 0.42 -1.5 4,016,215 + CCNA_03850 0.43 -1.5 4,016,215 + CCNA_03850 0.43 -1.0 4,016,234 - CCNA_03850 0.46 -2.2 4,016,244 + CCNA_03850 0.48 -2.9 4,016,266 + CCNA_03850 0.51 +0.8 4,016,266 + CCNA_03850 0.51 -1.3 4,016,323 + CCNA_03850 0.61 -2.8 4,016,333 + CCNA_03850 0.63 +0.3 4,016,333 + CCNA_03850 0.63 -2.4 4,016,333 + CCNA_03850 0.63 -1.8 4,016,341 - CCNA_03850 0.64 -0.6 4,016,363 + CCNA_03850 0.68 -2.8 4,016,363 + CCNA_03850 0.68 -1.4 4,016,393 + CCNA_03850 0.73 -2.0 4,016,393 + CCNA_03850 0.73 -1.5 4,016,401 - CCNA_03850 0.74 -3.2 4,016,469 + CCNA_03850 0.86 -2.4 4,016,469 + CCNA_03850 0.86 -3.0 4,016,469 + CCNA_03850 0.86 -0.9 4,016,470 - CCNA_03850 0.86 -1.8 4,016,564 + -0.7 4,016,572 + -2.4 4,016,613 + -3.9 4,016,622 + -2.4 4,016,688 - CCNA_03851 0.19 -2.7 4,016,701 - CCNA_03851 0.21 -3.8 4,016,813 + CCNA_03851 0.39 -2.2 4,016,841 + CCNA_03851 0.43 -2.0 4,016,856 + CCNA_03851 0.45 -2.0 4,016,875 + CCNA_03851 0.48 -3.8 4,016,888 - +0.8 4,016,944 - CCNA_03851 0.59 -1.7
Or see this region's nucleotide sequence