Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01837

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01835 and CCNA_01836 are separated by 57 nucleotidesCCNA_01836 and CCNA_01837 are separated by 148 nucleotidesCCNA_01837 and CCNA_01840 are separated by 800 nucleotides CCNA_01835: CCNA_01835 - ABC transporter ATP-binding protein, at 1,967,528 to 1,968,214 _01835 CCNA_01836: CCNA_01836 - acyl-CoA thioesterase I/lysophospholipase, at 1,968,272 to 1,968,904 _01836 CCNA_01837: CCNA_01837 - transposase, IS30 family, at 1,969,053 to 1,970,081 _01837 CCNA_01840: CCNA_01840 - MerR-family transcriptional regulator, at 1,970,882 to 1,972,324 _01840 Position (kb) 1969 1970 1971Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1968.102 kb on - strand, within CCNA_01835at 1968.120 kb on - strand, within CCNA_01835at 1968.157 kb on + strandat 1968.161 kb on - strandat 1968.166 kb on - strandat 1968.166 kb on - strandat 1968.242 kb on - strandat 1968.261 kb on - strandat 1968.271 kb on - strandat 1968.274 kb on + strandat 1968.362 kb on + strand, within CCNA_01836at 1968.434 kb on + strand, within CCNA_01836at 1968.436 kb on + strand, within CCNA_01836at 1968.436 kb on + strand, within CCNA_01836at 1968.444 kb on - strand, within CCNA_01836at 1968.444 kb on - strand, within CCNA_01836at 1968.444 kb on - strand, within CCNA_01836at 1968.564 kb on - strandat 1968.613 kb on + strand, within CCNA_01836at 1968.679 kb on - strand, within CCNA_01836at 1968.801 kb on - strand, within CCNA_01836at 1968.855 kb on - strandat 1968.926 kb on - strandat 1968.982 kb on - strandat 1968.982 kb on - strandat 1969.010 kb on + strandat 1969.068 kb on - strandat 1969.068 kb on - strandat 1969.093 kb on - strandat 1969.159 kb on + strand, within CCNA_01837at 1969.208 kb on - strand, within CCNA_01837at 1969.323 kb on + strand, within CCNA_01837at 1969.323 kb on + strand, within CCNA_01837at 1969.323 kb on + strand, within CCNA_01837at 1969.341 kb on + strand, within CCNA_01837at 1969.409 kb on + strand, within CCNA_01837at 1969.417 kb on - strand, within CCNA_01837at 1969.420 kb on + strand, within CCNA_01837at 1969.500 kb on + strand, within CCNA_01837at 1969.509 kb on + strand, within CCNA_01837at 1969.509 kb on + strand, within CCNA_01837at 1969.509 kb on + strand, within CCNA_01837at 1969.517 kb on - strand, within CCNA_01837at 1969.517 kb on - strand, within CCNA_01837at 1969.542 kb on + strand, within CCNA_01837at 1969.552 kb on - strand, within CCNA_01837at 1969.552 kb on - strand, within CCNA_01837at 1969.597 kb on - strand, within CCNA_01837at 1969.656 kb on - strand, within CCNA_01837at 1969.678 kb on + strand, within CCNA_01837at 1969.683 kb on - strand, within CCNA_01837at 1969.700 kb on + strand, within CCNA_01837at 1969.754 kb on - strand, within CCNA_01837at 1969.787 kb on + strand, within CCNA_01837at 1969.787 kb on + strand, within CCNA_01837at 1969.835 kb on + strand, within CCNA_01837at 1969.843 kb on - strand, within CCNA_01837at 1969.843 kb on - strand, within CCNA_01837at 1969.863 kb on - strand, within CCNA_01837at 1969.882 kb on - strand, within CCNA_01837at 1969.933 kb on - strand, within CCNA_01837at 1969.951 kb on + strand, within CCNA_01837at 1969.987 kb on - strandat 1969.993 kb on + strandat 1969.996 kb on - strandat 1970.013 kb on - strandat 1970.064 kb on + strandat 1970.267 kb on + strandat 1970.381 kb on + strandat 1970.413 kb on - strandat 1970.425 kb on + strandat 1970.452 kb on + strandat 1970.532 kb on + strandat 1970.547 kb on + strandat 1970.548 kb on - strandat 1970.575 kb on + strandat 1970.575 kb on + strandat 1970.599 kb on + strandat 1970.609 kb on + strandat 1970.633 kb on + strandat 1970.633 kb on + strandat 1970.633 kb on + strandat 1970.633 kb on + strandat 1970.641 kb on - strandat 1970.641 kb on - strandat 1970.641 kb on - strandat 1970.651 kb on - strandat 1970.656 kb on + strandat 1970.656 kb on + strandat 1970.669 kb on - strandat 1970.674 kb on - strandat 1970.674 kb on - strandat 1970.751 kb on - strandat 1970.751 kb on - strandat 1970.760 kb on - strandat 1970.803 kb on + strandat 1970.811 kb on - strandat 1970.836 kb on - strandat 1970.846 kb on + strandat 1970.854 kb on - strandat 1970.854 kb on - strandat 1970.883 kb on - strandat 1970.909 kb on - strandat 1970.938 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,968,102 - CCNA_01835 0.84 -0.7
1,968,120 - CCNA_01835 0.86 +1.5
1,968,157 + -1.6
1,968,161 - -0.1
1,968,166 - +0.4
1,968,166 - -0.3
1,968,242 - +2.7
1,968,261 - -1.6
1,968,271 - +1.2
1,968,274 + -0.3
1,968,362 + CCNA_01836 0.14 -0.8
1,968,434 + CCNA_01836 0.26 -0.0
1,968,436 + CCNA_01836 0.26 -0.1
1,968,436 + CCNA_01836 0.26 +0.3
1,968,444 - CCNA_01836 0.27 +0.9
1,968,444 - CCNA_01836 0.27 -2.0
1,968,444 - CCNA_01836 0.27 -0.8
1,968,564 - +0.2
1,968,613 + CCNA_01836 0.54 -0.6
1,968,679 - CCNA_01836 0.64 +0.9
1,968,801 - CCNA_01836 0.84 +0.5
1,968,855 - +0.4
1,968,926 - -1.6
1,968,982 - -1.1
1,968,982 - -2.6
1,969,010 + -1.2
1,969,068 - +1.7
1,969,068 - +0.7
1,969,093 - -0.3
1,969,159 + CCNA_01837 0.10 -0.6
1,969,208 - CCNA_01837 0.15 -1.9
1,969,323 + CCNA_01837 0.26 -0.8
1,969,323 + CCNA_01837 0.26 +0.9
1,969,323 + CCNA_01837 0.26 -0.6
1,969,341 + CCNA_01837 0.28 -0.3
1,969,409 + CCNA_01837 0.35 -0.3
1,969,417 - CCNA_01837 0.35 -3.2
1,969,420 + CCNA_01837 0.36 -0.4
1,969,500 + CCNA_01837 0.43 +0.2
1,969,509 + CCNA_01837 0.44 -1.8
1,969,509 + CCNA_01837 0.44 -1.1
1,969,509 + CCNA_01837 0.44 +0.2
1,969,517 - CCNA_01837 0.45 -0.4
1,969,517 - CCNA_01837 0.45 -1.4
1,969,542 + CCNA_01837 0.48 -0.2
1,969,552 - CCNA_01837 0.48 -2.7
1,969,552 - CCNA_01837 0.48 -1.2
1,969,597 - CCNA_01837 0.53 +0.2
1,969,656 - CCNA_01837 0.59 -1.7
1,969,678 + CCNA_01837 0.61 +0.2
1,969,683 - CCNA_01837 0.61 -1.8
1,969,700 + CCNA_01837 0.63 -1.3
1,969,754 - CCNA_01837 0.68 -0.3
1,969,787 + CCNA_01837 0.71 +0.2
1,969,787 + CCNA_01837 0.71 -0.8
1,969,835 + CCNA_01837 0.76 -1.0
1,969,843 - CCNA_01837 0.77 +0.6
1,969,843 - CCNA_01837 0.77 +2.0
1,969,863 - CCNA_01837 0.79 -0.4
1,969,882 - CCNA_01837 0.81 -0.6
1,969,933 - CCNA_01837 0.86 -1.3
1,969,951 + CCNA_01837 0.87 +0.1
1,969,987 - +0.4
1,969,993 + +0.2
1,969,996 - -1.0
1,970,013 - -1.2
1,970,064 + -0.1
1,970,267 + +0.2
1,970,381 + -2.6
1,970,413 - -1.7
1,970,425 + -2.5
1,970,452 + -1.9
1,970,532 + +0.8
1,970,547 + -1.4
1,970,548 - -1.5
1,970,575 + +0.0
1,970,575 + -0.5
1,970,599 + -1.5
1,970,609 + -0.4
1,970,633 + -0.3
1,970,633 + +1.1
1,970,633 + -0.6
1,970,633 + -0.2
1,970,641 - -0.7
1,970,641 - -0.4
1,970,641 - -0.7
1,970,651 - -1.9
1,970,656 + -0.1
1,970,656 + -0.9
1,970,669 - +0.6
1,970,674 - -2.7
1,970,674 - +1.2
1,970,751 - +0.6
1,970,751 - +1.2
1,970,760 - -0.3
1,970,803 + -1.3
1,970,811 - +2.2
1,970,836 - +0.1
1,970,846 + -2.3
1,970,854 - -0.2
1,970,854 - +1.6
1,970,883 - +0.0
1,970,909 - +0.7
1,970,938 - +1.5

Or see this region's nucleotide sequence