Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00104 and CCNA_00105 are separated by 97 nucleotides CCNA_00105 and CCNA_00106 are separated by 47 nucleotides CCNA_00106 and CCNA_00107 are separated by 160 nucleotides CCNA_00107 and CCNA_00108 are separated by 9 nucleotides
CCNA_00104: CCNA_00104 - orotidine 5'-phosphate decarboxylase, at 115,289 to 115,990
_00104
CCNA_00105: CCNA_00105 - MarC family integral membrane protein, at 116,088 to 116,786
_00105
CCNA_00106: CCNA_00106 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 116,834 to 118,099
_00106
CCNA_00107: CCNA_00107 - Trm112p-like protein, at 118,260 to 118,457
_00107
CCNA_00108: CCNA_00108 - lon endopeptidase-related protein, at 118,467 to 119,144
_00108
Position (kb)
116
117
118
119 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 115.852 kb on + strand, within CCNA_00104 at 115.884 kb on - strand, within CCNA_00104 at 115.916 kb on - strand, within CCNA_00104 at 115.954 kb on + strand at 115.955 kb on - strand at 115.967 kb on + strand at 115.978 kb on + strand at 115.986 kb on - strand at 116.018 kb on + strand at 116.025 kb on - strand at 116.039 kb on + strand at 116.064 kb on - strand at 116.720 kb on + strand at 116.770 kb on - strand at 116.794 kb on + strand at 116.794 kb on + strand at 116.794 kb on + strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.867 kb on + strand at 118.069 kb on + strand at 118.086 kb on + strand at 118.094 kb on + strand at 118.162 kb on + strand at 118.165 kb on - strand at 118.170 kb on - strand at 118.170 kb on - strand at 118.175 kb on - strand at 118.177 kb on + strand at 118.231 kb on - strand at 118.254 kb on - strand at 118.264 kb on - strand at 118.290 kb on - strand, within CCNA_00107 at 118.461 kb on - strand at 118.461 kb on - strand at 118.461 kb on - strand at 118.465 kb on + strand at 118.521 kb on - strand at 118.521 kb on - strand at 118.561 kb on + strand, within CCNA_00108 at 118.615 kb on + strand, within CCNA_00108 at 118.615 kb on + strand, within CCNA_00108 at 118.623 kb on - strand, within CCNA_00108 at 118.628 kb on - strand, within CCNA_00108 at 118.629 kb on + strand, within CCNA_00108 at 118.687 kb on - strand, within CCNA_00108 at 118.699 kb on - strand at 118.752 kb on + strand, within CCNA_00108 at 118.762 kb on + strand, within CCNA_00108 at 118.770 kb on - strand, within CCNA_00108 at 118.770 kb on - strand, within CCNA_00108 at 118.796 kb on - strand, within CCNA_00108 at 118.817 kb on + strand, within CCNA_00108 at 118.825 kb on - strand, within CCNA_00108 at 118.828 kb on + strand, within CCNA_00108 at 118.836 kb on - strand, within CCNA_00108 at 118.848 kb on + strand, within CCNA_00108 at 118.860 kb on - strand, within CCNA_00108 at 118.881 kb on - strand, within CCNA_00108 at 118.881 kb on - strand, within CCNA_00108 at 118.893 kb on + strand, within CCNA_00108 at 118.906 kb on + strand, within CCNA_00108 at 118.914 kb on - strand, within CCNA_00108 at 118.925 kb on + strand, within CCNA_00108 at 118.928 kb on - strand, within CCNA_00108 at 118.928 kb on - strand, within CCNA_00108 at 118.933 kb on - strand, within CCNA_00108 at 118.973 kb on + strand, within CCNA_00108 at 119.018 kb on + strand, within CCNA_00108 at 119.026 kb on - strand, within CCNA_00108 at 119.033 kb on + strand, within CCNA_00108 at 119.033 kb on + strand, within CCNA_00108 at 119.041 kb on - strand, within CCNA_00108 at 119.054 kb on + strand, within CCNA_00108 at 119.059 kb on + strand, within CCNA_00108 at 119.080 kb on - strand at 119.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 115,852 + CCNA_00104 0.80 -1.2 115,884 - CCNA_00104 0.85 -1.3 115,916 - CCNA_00104 0.89 -1.1 115,954 + -1.4 115,955 - -1.0 115,967 + -1.3 115,978 + -1.9 115,986 - -2.6 116,018 + -0.7 116,025 - -0.1 116,039 + -1.7 116,064 - -3.4 116,720 + +0.5 116,770 - -0.2 116,794 + +0.6 116,794 + +0.6 116,794 + +0.5 116,802 - -0.5 116,802 - -0.3 116,802 - -0.9 116,802 - -0.1 116,802 - -0.2 116,802 - +0.5 116,867 + +1.5 118,069 + +0.9 118,086 + -0.5 118,094 + +1.0 118,162 + +1.0 118,165 - +2.1 118,170 - -0.5 118,170 - +1.8 118,175 - -0.1 118,177 + +0.3 118,231 - -0.2 118,254 - +0.2 118,264 - -0.4 118,290 - CCNA_00107 0.15 +1.5 118,461 - +0.7 118,461 - +0.5 118,461 - -0.2 118,465 + +0.4 118,521 - -1.4 118,521 - +0.3 118,561 + CCNA_00108 0.14 -2.2 118,615 + CCNA_00108 0.22 -0.8 118,615 + CCNA_00108 0.22 -1.2 118,623 - CCNA_00108 0.23 +3.0 118,628 - CCNA_00108 0.24 -0.9 118,629 + CCNA_00108 0.24 -0.2 118,687 - CCNA_00108 0.32 +0.7 118,699 - -0.2 118,752 + CCNA_00108 0.42 +0.4 118,762 + CCNA_00108 0.44 +0.2 118,770 - CCNA_00108 0.45 +0.8 118,770 - CCNA_00108 0.45 +0.5 118,796 - CCNA_00108 0.49 +0.2 118,817 + CCNA_00108 0.52 -0.3 118,825 - CCNA_00108 0.53 +0.1 118,828 + CCNA_00108 0.53 -2.3 118,836 - CCNA_00108 0.54 +0.2 118,848 + CCNA_00108 0.56 +0.3 118,860 - CCNA_00108 0.58 +2.4 118,881 - CCNA_00108 0.61 +0.6 118,881 - CCNA_00108 0.61 +0.8 118,893 + CCNA_00108 0.63 -0.6 118,906 + CCNA_00108 0.65 +0.7 118,914 - CCNA_00108 0.66 +0.7 118,925 + CCNA_00108 0.68 +1.6 118,928 - CCNA_00108 0.68 +1.0 118,928 - CCNA_00108 0.68 +0.6 118,933 - CCNA_00108 0.69 +2.3 118,973 + CCNA_00108 0.75 -1.6 119,018 + CCNA_00108 0.81 -0.2 119,026 - CCNA_00108 0.82 +0.3 119,033 + CCNA_00108 0.83 -0.6 119,033 + CCNA_00108 0.83 -1.3 119,041 - CCNA_00108 0.85 +0.8 119,054 + CCNA_00108 0.87 +1.3 119,059 + CCNA_00108 0.87 +1.6 119,080 - +1.2 119,080 - +1.9
Or see this region's nucleotide sequence