Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00106

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00104 and CCNA_00105 are separated by 97 nucleotidesCCNA_00105 and CCNA_00106 are separated by 47 nucleotidesCCNA_00106 and CCNA_00107 are separated by 160 nucleotidesCCNA_00107 and CCNA_00108 are separated by 9 nucleotides CCNA_00104: CCNA_00104 - orotidine 5'-phosphate decarboxylase, at 115,289 to 115,990 _00104 CCNA_00105: CCNA_00105 - MarC family integral membrane protein, at 116,088 to 116,786 _00105 CCNA_00106: CCNA_00106 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 116,834 to 118,099 _00106 CCNA_00107: CCNA_00107 - Trm112p-like protein, at 118,260 to 118,457 _00107 CCNA_00108: CCNA_00108 - lon endopeptidase-related protein, at 118,467 to 119,144 _00108 Position (kb) 116 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 115.852 kb on + strand, within CCNA_00104at 115.884 kb on - strand, within CCNA_00104at 115.916 kb on - strand, within CCNA_00104at 115.954 kb on + strandat 115.955 kb on - strandat 115.967 kb on + strandat 115.978 kb on + strandat 115.986 kb on - strandat 116.018 kb on + strandat 116.025 kb on - strandat 116.039 kb on + strandat 116.064 kb on - strandat 116.720 kb on + strandat 116.770 kb on - strandat 116.794 kb on + strandat 116.794 kb on + strandat 116.794 kb on + strandat 116.802 kb on - strandat 116.802 kb on - strandat 116.802 kb on - strandat 116.802 kb on - strandat 116.802 kb on - strandat 116.802 kb on - strandat 116.867 kb on + strandat 118.069 kb on + strandat 118.086 kb on + strandat 118.094 kb on + strandat 118.162 kb on + strandat 118.165 kb on - strandat 118.170 kb on - strandat 118.170 kb on - strandat 118.175 kb on - strandat 118.177 kb on + strandat 118.231 kb on - strandat 118.254 kb on - strandat 118.264 kb on - strandat 118.290 kb on - strand, within CCNA_00107at 118.461 kb on - strandat 118.461 kb on - strandat 118.461 kb on - strandat 118.465 kb on + strandat 118.521 kb on - strandat 118.521 kb on - strandat 118.561 kb on + strand, within CCNA_00108at 118.615 kb on + strand, within CCNA_00108at 118.615 kb on + strand, within CCNA_00108at 118.623 kb on - strand, within CCNA_00108at 118.628 kb on - strand, within CCNA_00108at 118.629 kb on + strand, within CCNA_00108at 118.687 kb on - strand, within CCNA_00108at 118.699 kb on - strandat 118.752 kb on + strand, within CCNA_00108at 118.762 kb on + strand, within CCNA_00108at 118.770 kb on - strand, within CCNA_00108at 118.770 kb on - strand, within CCNA_00108at 118.796 kb on - strand, within CCNA_00108at 118.817 kb on + strand, within CCNA_00108at 118.825 kb on - strand, within CCNA_00108at 118.828 kb on + strand, within CCNA_00108at 118.836 kb on - strand, within CCNA_00108at 118.848 kb on + strand, within CCNA_00108at 118.860 kb on - strand, within CCNA_00108at 118.881 kb on - strand, within CCNA_00108at 118.881 kb on - strand, within CCNA_00108at 118.893 kb on + strand, within CCNA_00108at 118.906 kb on + strand, within CCNA_00108at 118.914 kb on - strand, within CCNA_00108at 118.925 kb on + strand, within CCNA_00108at 118.928 kb on - strand, within CCNA_00108at 118.928 kb on - strand, within CCNA_00108at 118.933 kb on - strand, within CCNA_00108at 118.973 kb on + strand, within CCNA_00108at 119.018 kb on + strand, within CCNA_00108at 119.026 kb on - strand, within CCNA_00108at 119.033 kb on + strand, within CCNA_00108at 119.033 kb on + strand, within CCNA_00108at 119.041 kb on - strand, within CCNA_00108at 119.054 kb on + strand, within CCNA_00108at 119.059 kb on + strand, within CCNA_00108at 119.080 kb on - strandat 119.080 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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115,852 + CCNA_00104 0.80 -1.2
115,884 - CCNA_00104 0.85 -1.3
115,916 - CCNA_00104 0.89 -1.1
115,954 + -1.4
115,955 - -1.0
115,967 + -1.3
115,978 + -1.9
115,986 - -2.6
116,018 + -0.7
116,025 - -0.1
116,039 + -1.7
116,064 - -3.4
116,720 + +0.5
116,770 - -0.2
116,794 + +0.6
116,794 + +0.6
116,794 + +0.5
116,802 - -0.5
116,802 - -0.3
116,802 - -0.9
116,802 - -0.1
116,802 - -0.2
116,802 - +0.5
116,867 + +1.5
118,069 + +0.9
118,086 + -0.5
118,094 + +1.0
118,162 + +1.0
118,165 - +2.1
118,170 - -0.5
118,170 - +1.8
118,175 - -0.1
118,177 + +0.3
118,231 - -0.2
118,254 - +0.2
118,264 - -0.4
118,290 - CCNA_00107 0.15 +1.5
118,461 - +0.7
118,461 - +0.5
118,461 - -0.2
118,465 + +0.4
118,521 - -1.4
118,521 - +0.3
118,561 + CCNA_00108 0.14 -2.2
118,615 + CCNA_00108 0.22 -0.8
118,615 + CCNA_00108 0.22 -1.2
118,623 - CCNA_00108 0.23 +3.0
118,628 - CCNA_00108 0.24 -0.9
118,629 + CCNA_00108 0.24 -0.2
118,687 - CCNA_00108 0.32 +0.7
118,699 - -0.2
118,752 + CCNA_00108 0.42 +0.4
118,762 + CCNA_00108 0.44 +0.2
118,770 - CCNA_00108 0.45 +0.8
118,770 - CCNA_00108 0.45 +0.5
118,796 - CCNA_00108 0.49 +0.2
118,817 + CCNA_00108 0.52 -0.3
118,825 - CCNA_00108 0.53 +0.1
118,828 + CCNA_00108 0.53 -2.3
118,836 - CCNA_00108 0.54 +0.2
118,848 + CCNA_00108 0.56 +0.3
118,860 - CCNA_00108 0.58 +2.4
118,881 - CCNA_00108 0.61 +0.6
118,881 - CCNA_00108 0.61 +0.8
118,893 + CCNA_00108 0.63 -0.6
118,906 + CCNA_00108 0.65 +0.7
118,914 - CCNA_00108 0.66 +0.7
118,925 + CCNA_00108 0.68 +1.6
118,928 - CCNA_00108 0.68 +1.0
118,928 - CCNA_00108 0.68 +0.6
118,933 - CCNA_00108 0.69 +2.3
118,973 + CCNA_00108 0.75 -1.6
119,018 + CCNA_00108 0.81 -0.2
119,026 - CCNA_00108 0.82 +0.3
119,033 + CCNA_00108 0.83 -0.6
119,033 + CCNA_00108 0.83 -1.3
119,041 - CCNA_00108 0.85 +0.8
119,054 + CCNA_00108 0.87 +1.3
119,059 + CCNA_00108 0.87 +1.6
119,080 - +1.2
119,080 - +1.9

Or see this region's nucleotide sequence