Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00024

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00022 and CCNA_00023 are separated by 182 nucleotidesCCNA_00023 and CCNA_00024 are separated by 16 nucleotidesCCNA_00024 and CCNA_00025 are separated by 9 nucleotides CCNA_00022: CCNA_00022 - putative aerobic-type carbon monoxide dehydrogenase, small subunit CoxS, at 23,029 to 23,559 _00022 CCNA_00023: CCNA_00023 - putative periplasmic protein, at 23,742 to 24,074 _00023 CCNA_00024: CCNA_00024 - uroporphyrin-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase, at 24,091 to 24,981 _00024 CCNA_00025: CCNA_00025 - major facilitator superfamily transporter, at 24,991 to 26,643 _00025 Position (kb) 24 25Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 23.220 kb on - strand, within CCNA_00022at 23.232 kb on + strand, within CCNA_00022at 23.273 kb on - strand, within CCNA_00022at 23.297 kb on + strand, within CCNA_00022at 23.305 kb on - strand, within CCNA_00022at 23.307 kb on + strand, within CCNA_00022at 23.310 kb on - strand, within CCNA_00022at 23.326 kb on + strand, within CCNA_00022at 23.342 kb on + strand, within CCNA_00022at 23.366 kb on + strand, within CCNA_00022at 23.415 kb on - strand, within CCNA_00022at 23.415 kb on - strand, within CCNA_00022at 23.433 kb on + strand, within CCNA_00022at 23.462 kb on + strand, within CCNA_00022at 23.491 kb on + strand, within CCNA_00022at 23.491 kb on + strand, within CCNA_00022at 23.491 kb on + strand, within CCNA_00022at 23.494 kb on - strand, within CCNA_00022at 23.494 kb on - strand, within CCNA_00022at 23.548 kb on + strandat 23.548 kb on + strandat 23.548 kb on + strandat 23.556 kb on - strandat 23.556 kb on - strandat 23.556 kb on - strandat 23.556 kb on - strandat 23.598 kb on + strandat 23.607 kb on + strandat 23.609 kb on + strandat 23.609 kb on + strandat 23.627 kb on - strandat 23.627 kb on - strandat 23.632 kb on - strandat 23.666 kb on + strandat 23.674 kb on - strandat 23.723 kb on + strandat 23.724 kb on + strandat 23.732 kb on - strandat 23.739 kb on + strandat 23.876 kb on + strand, within CCNA_00023at 23.919 kb on - strand, within CCNA_00023at 23.965 kb on + strand, within CCNA_00023at 23.993 kb on + strand, within CCNA_00023at 24.001 kb on - strand, within CCNA_00023at 24.019 kb on - strand, within CCNA_00023at 24.020 kb on - strand, within CCNA_00023at 24.041 kb on - strandat 24.075 kb on + strandat 24.083 kb on - strandat 24.165 kb on + strandat 24.240 kb on + strand, within CCNA_00024at 24.283 kb on - strand, within CCNA_00024at 24.322 kb on + strand, within CCNA_00024at 24.322 kb on + strand, within CCNA_00024at 24.328 kb on - strand, within CCNA_00024at 24.358 kb on - strand, within CCNA_00024at 24.443 kb on + strand, within CCNA_00024at 24.444 kb on - strand, within CCNA_00024at 24.492 kb on - strand, within CCNA_00024at 24.492 kb on - strand, within CCNA_00024at 24.516 kb on + strand, within CCNA_00024at 24.516 kb on + strand, within CCNA_00024at 24.524 kb on - strand, within CCNA_00024at 24.531 kb on + strand, within CCNA_00024at 24.531 kb on + strand, within CCNA_00024at 24.531 kb on + strand, within CCNA_00024at 24.563 kb on + strand, within CCNA_00024at 24.629 kb on + strand, within CCNA_00024at 24.660 kb on - strand, within CCNA_00024at 24.666 kb on - strand, within CCNA_00024at 24.675 kb on + strand, within CCNA_00024at 24.698 kb on - strand, within CCNA_00024at 24.795 kb on + strand, within CCNA_00024at 24.848 kb on + strand, within CCNA_00024at 24.856 kb on - strand, within CCNA_00024at 24.857 kb on + strand, within CCNA_00024at 24.920 kb on - strandat 24.925 kb on + strandat 24.932 kb on + strandat 24.936 kb on + strandat 24.940 kb on - strandat 24.942 kb on + strandat 24.969 kb on - strandat 24.978 kb on - strandat 25.013 kb on + strandat 25.016 kb on - strandat 25.043 kb on + strandat 25.048 kb on + strandat 25.053 kb on + strandat 25.060 kb on + strandat 25.061 kb on - strandat 25.061 kb on - strandat 25.075 kb on - strandat 25.082 kb on + strandat 25.082 kb on + strandat 25.082 kb on + strandat 25.090 kb on - strandat 25.117 kb on + strandat 25.123 kb on + strandat 25.126 kb on - strandat 25.128 kb on + strandat 25.128 kb on + strandat 25.135 kb on + strandat 25.160 kb on + strand, within CCNA_00025at 25.168 kb on - strand, within CCNA_00025at 25.171 kb on + strand, within CCNA_00025at 25.171 kb on + strand, within CCNA_00025at 25.176 kb on + strand, within CCNA_00025at 25.179 kb on - strand, within CCNA_00025at 25.179 kb on - strand, within CCNA_00025at 25.179 kb on - strand, within CCNA_00025at 25.179 kb on - strand, within CCNA_00025at 25.184 kb on - strand, within CCNA_00025at 25.184 kb on - strand, within CCNA_00025at 25.204 kb on + strand, within CCNA_00025at 25.204 kb on + strand, within CCNA_00025at 25.204 kb on - strand, within CCNA_00025at 25.215 kb on + strand, within CCNA_00025at 25.229 kb on + strand, within CCNA_00025at 25.237 kb on - strand, within CCNA_00025at 25.242 kb on - strand, within CCNA_00025at 25.261 kb on + strand, within CCNA_00025at 25.261 kb on + strand, within CCNA_00025at 25.274 kb on + strand, within CCNA_00025at 25.289 kb on + strand, within CCNA_00025at 25.304 kb on + strand, within CCNA_00025at 25.310 kb on + strand, within CCNA_00025at 25.343 kb on + strand, within CCNA_00025at 25.351 kb on - strand, within CCNA_00025at 25.351 kb on - strand, within CCNA_00025at 25.362 kb on - strand, within CCNA_00025at 25.369 kb on - strand, within CCNA_00025at 25.382 kb on + strand, within CCNA_00025at 25.384 kb on - strand, within CCNA_00025at 25.398 kb on + strand, within CCNA_00025at 25.398 kb on + strand, within CCNA_00025at 25.406 kb on - strand, within CCNA_00025at 25.422 kb on - strand, within CCNA_00025at 25.425 kb on - strand, within CCNA_00025at 25.501 kb on - strand, within CCNA_00025at 25.505 kb on - strand, within CCNA_00025at 25.521 kb on + strand, within CCNA_00025at 25.561 kb on - strand, within CCNA_00025at 25.606 kb on - strand, within CCNA_00025at 25.631 kb on + strand, within CCNA_00025at 25.653 kb on + strand, within CCNA_00025at 25.686 kb on + strand, within CCNA_00025at 25.834 kb on + strand, within CCNA_00025at 25.842 kb on - strand, within CCNA_00025at 25.858 kb on + strand, within CCNA_00025at 25.910 kb on + strand, within CCNA_00025at 25.929 kb on + strand, within CCNA_00025at 25.937 kb on - strand, within CCNA_00025at 25.961 kb on - strand, within CCNA_00025at 25.975 kb on - strand, within CCNA_00025

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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23,220 - CCNA_00022 0.36 -0.2
23,232 + CCNA_00022 0.38 +0.4
23,273 - CCNA_00022 0.46 +0.5
23,297 + CCNA_00022 0.50 +0.3
23,305 - CCNA_00022 0.52 +0.0
23,307 + CCNA_00022 0.52 +2.6
23,310 - CCNA_00022 0.53 +0.1
23,326 + CCNA_00022 0.56 +0.4
23,342 + CCNA_00022 0.59 -1.5
23,366 + CCNA_00022 0.63 +0.0
23,415 - CCNA_00022 0.73 +0.9
23,415 - CCNA_00022 0.73 -0.3
23,433 + CCNA_00022 0.76 -1.3
23,462 + CCNA_00022 0.82 +2.6
23,491 + CCNA_00022 0.87 -1.3
23,491 + CCNA_00022 0.87 +1.0
23,491 + CCNA_00022 0.87 +0.4
23,494 - CCNA_00022 0.88 +0.1
23,494 - CCNA_00022 0.88 -0.1
23,548 + -2.2
23,548 + +0.8
23,548 + +0.1
23,556 - +0.6
23,556 - -1.9
23,556 - -0.2
23,556 - +1.2
23,598 + +0.3
23,607 + +1.4
23,609 + -0.9
23,609 + -0.4
23,627 - +0.9
23,627 - +1.2
23,632 - +1.0
23,666 + +0.3
23,674 - +1.2
23,723 + +0.3
23,724 + -1.0
23,732 - -0.2
23,739 + -0.7
23,876 + CCNA_00023 0.40 -0.7
23,919 - CCNA_00023 0.53 +0.4
23,965 + CCNA_00023 0.67 -2.9
23,993 + CCNA_00023 0.75 +0.3
24,001 - CCNA_00023 0.78 +0.3
24,019 - CCNA_00023 0.83 -0.3
24,020 - CCNA_00023 0.83 -1.6
24,041 - -0.0
24,075 + +1.3
24,083 - +0.5
24,165 + -3.8
24,240 + CCNA_00024 0.17 -0.4
24,283 - CCNA_00024 0.22 -1.1
24,322 + CCNA_00024 0.26 -1.1
24,322 + CCNA_00024 0.26 -1.3
24,328 - CCNA_00024 0.27 -2.6
24,358 - CCNA_00024 0.30 +0.6
24,443 + CCNA_00024 0.40 -1.7
24,444 - CCNA_00024 0.40 +0.3
24,492 - CCNA_00024 0.45 +0.3
24,492 - CCNA_00024 0.45 -0.9
24,516 + CCNA_00024 0.48 -2.1
24,516 + CCNA_00024 0.48 -1.5
24,524 - CCNA_00024 0.49 +0.6
24,531 + CCNA_00024 0.49 -1.9
24,531 + CCNA_00024 0.49 -1.3
24,531 + CCNA_00024 0.49 -2.0
24,563 + CCNA_00024 0.53 -0.6
24,629 + CCNA_00024 0.60 -2.1
24,660 - CCNA_00024 0.64 -0.7
24,666 - CCNA_00024 0.65 -0.9
24,675 + CCNA_00024 0.66 -1.6
24,698 - CCNA_00024 0.68 -1.5
24,795 + CCNA_00024 0.79 -0.7
24,848 + CCNA_00024 0.85 -1.4
24,856 - CCNA_00024 0.86 -2.1
24,857 + CCNA_00024 0.86 -2.7
24,920 - -2.1
24,925 + -3.2
24,932 + -2.2
24,936 + -0.7
24,940 - -2.5
24,942 + -1.6
24,969 - +0.1
24,978 - -1.2
25,013 + +2.6
25,016 - +1.0
25,043 + +0.8
25,048 + -1.0
25,053 + -1.6
25,060 + -0.9
25,061 - +0.8
25,061 - +2.5
25,075 - +1.1
25,082 + +0.1
25,082 + +0.9
25,082 + -0.9
25,090 - +0.7
25,117 + +0.7
25,123 + +0.4
25,126 - +0.0
25,128 + +0.6
25,128 + -0.8
25,135 + -1.0
25,160 + CCNA_00025 0.10 +0.5
25,168 - CCNA_00025 0.11 +0.4
25,171 + CCNA_00025 0.11 -0.2
25,171 + CCNA_00025 0.11 -2.4
25,176 + CCNA_00025 0.11 -0.0
25,179 - CCNA_00025 0.11 -1.4
25,179 - CCNA_00025 0.11 +0.5
25,179 - CCNA_00025 0.11 +1.3
25,179 - CCNA_00025 0.11 +1.3
25,184 - CCNA_00025 0.12 +0.4
25,184 - CCNA_00025 0.12 +1.3
25,204 + CCNA_00025 0.13 +1.0
25,204 + CCNA_00025 0.13 -0.2
25,204 - CCNA_00025 0.13 +2.3
25,215 + CCNA_00025 0.14 -1.2
25,229 + CCNA_00025 0.14 -2.0
25,237 - CCNA_00025 0.15 +1.0
25,242 - CCNA_00025 0.15 +1.6
25,261 + CCNA_00025 0.16 +0.6
25,261 + CCNA_00025 0.16 +2.2
25,274 + CCNA_00025 0.17 +1.1
25,289 + CCNA_00025 0.18 +0.6
25,304 + CCNA_00025 0.19 -0.5
25,310 + CCNA_00025 0.19 +1.0
25,343 + CCNA_00025 0.21 -0.1
25,351 - CCNA_00025 0.22 +0.6
25,351 - CCNA_00025 0.22 +2.2
25,362 - CCNA_00025 0.22 +0.9
25,369 - CCNA_00025 0.23 +1.8
25,382 + CCNA_00025 0.24 +0.8
25,384 - CCNA_00025 0.24 +0.7
25,398 + CCNA_00025 0.25 +1.0
25,398 + CCNA_00025 0.25 +0.8
25,406 - CCNA_00025 0.25 +3.6
25,422 - CCNA_00025 0.26 +1.5
25,425 - CCNA_00025 0.26 +1.0
25,501 - CCNA_00025 0.31 +1.5
25,505 - CCNA_00025 0.31 +0.4
25,521 + CCNA_00025 0.32 +1.7
25,561 - CCNA_00025 0.34 +0.3
25,606 - CCNA_00025 0.37 +0.4
25,631 + CCNA_00025 0.39 +0.8
25,653 + CCNA_00025 0.40 +0.2
25,686 + CCNA_00025 0.42 -0.9
25,834 + CCNA_00025 0.51 -0.3
25,842 - CCNA_00025 0.51 +0.6
25,858 + CCNA_00025 0.52 -1.2
25,910 + CCNA_00025 0.56 +0.2
25,929 + CCNA_00025 0.57 -0.3
25,937 - CCNA_00025 0.57 +0.8
25,961 - CCNA_00025 0.59 -2.4
25,975 - CCNA_00025 0.60 +0.3

Or see this region's nucleotide sequence