Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4164

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4162 and Ac3H11_4163 overlap by 43 nucleotidesAc3H11_4163 and Ac3H11_4164 are separated by 44 nucleotidesAc3H11_4164 and Ac3H11_4165 are separated by 57 nucleotides Ac3H11_4162 - glutamyl-Q-tRNA synthetase, at 414,778 to 415,767 _4162 Ac3H11_4163 - tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33), at 415,725 to 416,525 _4163 Ac3H11_4164 - GGDEF family protein, at 416,570 to 417,625 _4164 Ac3H11_4165 - Adenylate cyclase (EC 4.6.1.1), at 417,683 to 420,655 _4165 Position (kb) 416 417 418Strain fitness (log2 ratio) -2 -1 0 1 2at 415.664 kb on + strand, within Ac3H11_4162at 415.665 kb on - strand, within Ac3H11_4162at 415.750 kb on + strandat 415.750 kb on + strandat 415.750 kb on + strandat 415.750 kb on + strandat 415.750 kb on + strandat 415.750 kb on + strandat 415.750 kb on + strandat 415.751 kb on - strandat 415.751 kb on - strandat 415.751 kb on - strandat 415.751 kb on - strandat 415.751 kb on - strandat 415.953 kb on + strand, within Ac3H11_4163at 415.954 kb on - strand, within Ac3H11_4163at 416.328 kb on + strand, within Ac3H11_4163at 416.329 kb on - strand, within Ac3H11_4163at 416.358 kb on + strand, within Ac3H11_4163at 416.359 kb on - strand, within Ac3H11_4163at 416.359 kb on - strand, within Ac3H11_4163at 416.359 kb on - strand, within Ac3H11_4163at 416.451 kb on - strandat 416.523 kb on + strandat 416.524 kb on - strandat 416.569 kb on + strandat 416.569 kb on + strandat 416.569 kb on + strandat 416.569 kb on + strandat 416.570 kb on - strandat 416.570 kb on - strandat 416.717 kb on + strand, within Ac3H11_4164at 416.717 kb on + strand, within Ac3H11_4164at 416.717 kb on + strand, within Ac3H11_4164at 416.717 kb on + strand, within Ac3H11_4164at 416.718 kb on - strand, within Ac3H11_4164at 416.718 kb on - strand, within Ac3H11_4164at 416.718 kb on - strand, within Ac3H11_4164at 416.718 kb on - strand, within Ac3H11_4164at 416.739 kb on + strand, within Ac3H11_4164at 416.739 kb on + strand, within Ac3H11_4164at 416.810 kb on + strand, within Ac3H11_4164at 416.810 kb on + strand, within Ac3H11_4164at 416.810 kb on + strand, within Ac3H11_4164at 416.879 kb on + strand, within Ac3H11_4164at 416.879 kb on + strand, within Ac3H11_4164at 416.880 kb on - strand, within Ac3H11_4164at 416.880 kb on - strand, within Ac3H11_4164at 416.880 kb on - strand, within Ac3H11_4164at 416.996 kb on + strand, within Ac3H11_4164at 416.997 kb on - strand, within Ac3H11_4164at 416.997 kb on - strand, within Ac3H11_4164at 416.997 kb on - strand, within Ac3H11_4164at 417.005 kb on + strand, within Ac3H11_4164at 417.005 kb on + strand, within Ac3H11_4164at 417.005 kb on + strand, within Ac3H11_4164at 417.005 kb on + strand, within Ac3H11_4164at 417.006 kb on - strand, within Ac3H11_4164at 417.006 kb on - strand, within Ac3H11_4164at 417.024 kb on - strand, within Ac3H11_4164at 417.248 kb on + strand, within Ac3H11_4164at 417.248 kb on + strand, within Ac3H11_4164at 417.249 kb on - strand, within Ac3H11_4164at 417.416 kb on + strand, within Ac3H11_4164at 417.416 kb on + strand, within Ac3H11_4164at 417.417 kb on - strand, within Ac3H11_4164at 417.518 kb on + strand, within Ac3H11_4164at 417.518 kb on + strand, within Ac3H11_4164at 417.519 kb on - strand, within Ac3H11_4164at 417.519 kb on - strand, within Ac3H11_4164at 417.521 kb on + strandat 417.521 kb on + strandat 417.522 kb on - strandat 417.522 kb on - strandat 417.557 kb on + strandat 417.557 kb on + strandat 417.558 kb on - strandat 417.558 kb on - strandat 417.558 kb on - strandat 417.756 kb on + strandat 417.756 kb on + strandat 417.756 kb on + strandat 417.757 kb on - strandat 417.757 kb on - strandat 417.757 kb on - strandat 417.873 kb on + strandat 417.874 kb on - strandat 417.874 kb on - strandat 417.874 kb on - strandat 417.874 kb on - strandat 417.874 kb on - strandat 417.874 kb on - strandat 418.536 kb on + strand, within Ac3H11_4165at 418.536 kb on + strand, within Ac3H11_4165at 418.537 kb on - strand, within Ac3H11_4165at 418.599 kb on + strand, within Ac3H11_4165at 418.599 kb on + strand, within Ac3H11_4165at 418.599 kb on + strand, within Ac3H11_4165at 418.599 kb on + strand, within Ac3H11_4165at 418.599 kb on + strand, within Ac3H11_4165at 418.600 kb on - strand, within Ac3H11_4165at 418.600 kb on - strand, within Ac3H11_4165

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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415,664 + Ac3H11_4162 0.89 -1.5
415,665 - Ac3H11_4162 0.90 +0.3
415,750 + -1.5
415,750 + +0.2
415,750 + -1.3
415,750 + -1.9
415,750 + -1.8
415,750 + -0.7
415,750 + +0.9
415,751 - -2.0
415,751 - -0.2
415,751 - +1.3
415,751 - +0.2
415,751 - -1.4
415,953 + Ac3H11_4163 0.28 +0.4
415,954 - Ac3H11_4163 0.29 +0.6
416,328 + Ac3H11_4163 0.75 +0.6
416,329 - Ac3H11_4163 0.75 +0.6
416,358 + Ac3H11_4163 0.79 +0.4
416,359 - Ac3H11_4163 0.79 +1.3
416,359 - Ac3H11_4163 0.79 -0.1
416,359 - Ac3H11_4163 0.79 +0.6
416,451 - +1.0
416,523 + -1.2
416,524 - +0.9
416,569 + +0.1
416,569 + +0.1
416,569 + -0.6
416,569 + +0.7
416,570 - +0.0
416,570 - -0.7
416,717 + Ac3H11_4164 0.14 -0.4
416,717 + Ac3H11_4164 0.14 +0.2
416,717 + Ac3H11_4164 0.14 +0.5
416,717 + Ac3H11_4164 0.14 -1.1
416,718 - Ac3H11_4164 0.14 -0.2
416,718 - Ac3H11_4164 0.14 +0.2
416,718 - Ac3H11_4164 0.14 +0.4
416,718 - Ac3H11_4164 0.14 +0.4
416,739 + Ac3H11_4164 0.16 +1.6
416,739 + Ac3H11_4164 0.16 +0.2
416,810 + Ac3H11_4164 0.23 -0.1
416,810 + Ac3H11_4164 0.23 +0.1
416,810 + Ac3H11_4164 0.23 +0.8
416,879 + Ac3H11_4164 0.29 +0.9
416,879 + Ac3H11_4164 0.29 +0.4
416,880 - Ac3H11_4164 0.29 -0.0
416,880 - Ac3H11_4164 0.29 -0.3
416,880 - Ac3H11_4164 0.29 +1.4
416,996 + Ac3H11_4164 0.40 +0.6
416,997 - Ac3H11_4164 0.40 +2.0
416,997 - Ac3H11_4164 0.40 +1.3
416,997 - Ac3H11_4164 0.40 +0.5
417,005 + Ac3H11_4164 0.41 +1.0
417,005 + Ac3H11_4164 0.41 +1.5
417,005 + Ac3H11_4164 0.41 +0.4
417,005 + Ac3H11_4164 0.41 -0.1
417,006 - Ac3H11_4164 0.41 -0.2
417,006 - Ac3H11_4164 0.41 +1.5
417,024 - Ac3H11_4164 0.43 -0.0
417,248 + Ac3H11_4164 0.64 +0.5
417,248 + Ac3H11_4164 0.64 +1.2
417,249 - Ac3H11_4164 0.64 +0.5
417,416 + Ac3H11_4164 0.80 +0.8
417,416 + Ac3H11_4164 0.80 +0.3
417,417 - Ac3H11_4164 0.80 +0.6
417,518 + Ac3H11_4164 0.90 +0.6
417,518 + Ac3H11_4164 0.90 +0.2
417,519 - Ac3H11_4164 0.90 +1.0
417,519 - Ac3H11_4164 0.90 +1.5
417,521 + +0.9
417,521 + +0.6
417,522 - +0.6
417,522 - -0.3
417,557 + +0.7
417,557 + -0.6
417,558 - +0.5
417,558 - +0.1
417,558 - +0.4
417,756 + -0.9
417,756 + +0.6
417,756 + -0.2
417,757 - +0.5
417,757 - +1.0
417,757 - -0.1
417,873 + -0.4
417,874 - -0.8
417,874 - +0.2
417,874 - -0.3
417,874 - +0.1
417,874 - -1.1
417,874 - -0.3
418,536 + Ac3H11_4165 0.29 +0.0
418,536 + Ac3H11_4165 0.29 +1.2
418,537 - Ac3H11_4165 0.29 +1.2
418,599 + Ac3H11_4165 0.31 +0.0
418,599 + Ac3H11_4165 0.31 +0.9
418,599 + Ac3H11_4165 0.31 -0.6
418,599 + Ac3H11_4165 0.31 +0.2
418,599 + Ac3H11_4165 0.31 +0.4
418,600 - Ac3H11_4165 0.31 -0.4
418,600 - Ac3H11_4165 0.31 -1.3

Or see this region's nucleotide sequence