Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3808

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3806 and Ac3H11_3807 overlap by 8 nucleotidesAc3H11_3807 and Ac3H11_3808 are separated by 65 nucleotidesAc3H11_3808 and Ac3H11_3809 overlap by 4 nucleotides Ac3H11_3806 - FIG00433900: hypothetical protein, at 19,487 to 20,203 _3806 Ac3H11_3807 - FIG00431662: hypothetical protein, at 20,196 to 20,756 _3807 Ac3H11_3808 - tungsten-containing formate dehydrogenase alpha subunit, at 20,822 to 23,707 _3808 Ac3H11_3809 - tungsten-containing formate dehydrogenase beta subunit, at 23,704 to 25,611 _3809 Position (kb) 20 21 22 23 24Strain fitness (log2 ratio) -2 -1 0 1 2 3at 19.872 kb on + strand, within Ac3H11_3806at 19.873 kb on - strand, within Ac3H11_3806at 19.873 kb on - strand, within Ac3H11_3806at 19.873 kb on - strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.884 kb on + strand, within Ac3H11_3806at 19.885 kb on - strand, within Ac3H11_3806at 19.885 kb on - strand, within Ac3H11_3806at 19.885 kb on - strand, within Ac3H11_3806at 19.885 kb on - strand, within Ac3H11_3806at 19.885 kb on - strand, within Ac3H11_3806at 20.326 kb on + strand, within Ac3H11_3807at 20.327 kb on - strand, within Ac3H11_3807at 20.428 kb on + strand, within Ac3H11_3807at 20.428 kb on + strand, within Ac3H11_3807at 20.428 kb on + strand, within Ac3H11_3807at 20.429 kb on - strand, within Ac3H11_3807at 20.429 kb on - strand, within Ac3H11_3807at 20.429 kb on - strand, within Ac3H11_3807at 20.481 kb on - strand, within Ac3H11_3807at 20.481 kb on - strand, within Ac3H11_3807at 20.542 kb on + strand, within Ac3H11_3807at 20.543 kb on - strand, within Ac3H11_3807at 20.769 kb on + strandat 20.770 kb on - strandat 20.865 kb on + strandat 20.865 kb on + strandat 20.865 kb on + strandat 20.938 kb on - strandat 21.312 kb on + strand, within Ac3H11_3808at 21.313 kb on - strand, within Ac3H11_3808at 21.313 kb on - strand, within Ac3H11_3808at 21.313 kb on - strand, within Ac3H11_3808at 21.313 kb on - strand, within Ac3H11_3808at 21.313 kb on - strand, within Ac3H11_3808at 21.393 kb on + strand, within Ac3H11_3808at 21.393 kb on + strand, within Ac3H11_3808at 21.426 kb on + strand, within Ac3H11_3808at 21.426 kb on + strand, within Ac3H11_3808at 21.426 kb on + strand, within Ac3H11_3808at 21.426 kb on + strand, within Ac3H11_3808at 21.426 kb on + strand, within Ac3H11_3808at 21.427 kb on - strand, within Ac3H11_3808at 21.714 kb on + strand, within Ac3H11_3808at 21.714 kb on + strand, within Ac3H11_3808at 21.714 kb on + strand, within Ac3H11_3808at 21.714 kb on + strand, within Ac3H11_3808at 21.714 kb on + strand, within Ac3H11_3808at 21.714 kb on + strand, within Ac3H11_3808at 21.714 kb on + strand, within Ac3H11_3808at 21.714 kb on + strand, within Ac3H11_3808at 21.714 kb on + strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.715 kb on - strand, within Ac3H11_3808at 21.861 kb on + strand, within Ac3H11_3808at 21.861 kb on + strand, within Ac3H11_3808at 21.862 kb on - strand, within Ac3H11_3808at 21.862 kb on - strand, within Ac3H11_3808at 21.862 kb on - strand, within Ac3H11_3808at 22.569 kb on + strand, within Ac3H11_3808at 22.569 kb on + strand, within Ac3H11_3808at 22.570 kb on - strand, within Ac3H11_3808at 22.570 kb on - strand, within Ac3H11_3808at 22.570 kb on - strand, within Ac3H11_3808at 22.720 kb on - strand, within Ac3H11_3808at 22.791 kb on + strand, within Ac3H11_3808at 22.792 kb on - strand, within Ac3H11_3808at 22.887 kb on + strand, within Ac3H11_3808at 22.887 kb on + strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 22.888 kb on - strand, within Ac3H11_3808at 23.580 kb on + strandat 23.581 kb on - strandat 23.804 kb on + strandat 23.804 kb on + strandat 23.805 kb on - strandat 24.155 kb on + strand, within Ac3H11_3809at 24.155 kb on + strand, within Ac3H11_3809at 24.156 kb on - strand, within Ac3H11_3809at 24.156 kb on - strand, within Ac3H11_3809at 24.156 kb on - strand, within Ac3H11_3809at 24.156 kb on - strand, within Ac3H11_3809at 24.161 kb on + strand, within Ac3H11_3809at 24.161 kb on + strand, within Ac3H11_3809at 24.161 kb on + strand, within Ac3H11_3809at 24.162 kb on - strand, within Ac3H11_3809at 24.162 kb on - strand, within Ac3H11_3809at 24.162 kb on - strand, within Ac3H11_3809at 24.195 kb on - strand, within Ac3H11_3809at 24.356 kb on + strand, within Ac3H11_3809at 24.357 kb on - strand, within Ac3H11_3809at 24.416 kb on + strand, within Ac3H11_3809at 24.416 kb on + strand, within Ac3H11_3809at 24.417 kb on - strand, within Ac3H11_3809at 24.491 kb on + strand, within Ac3H11_3809at 24.491 kb on + strand, within Ac3H11_3809at 24.491 kb on + strand, within Ac3H11_3809at 24.492 kb on - strand, within Ac3H11_3809at 24.492 kb on - strand, within Ac3H11_3809at 24.492 kb on - strand, within Ac3H11_3809at 24.492 kb on - strand, within Ac3H11_3809at 24.492 kb on - strand, within Ac3H11_3809at 24.594 kb on - strand, within Ac3H11_3809at 24.608 kb on + strand, within Ac3H11_3809at 24.608 kb on + strand, within Ac3H11_3809at 24.608 kb on + strand, within Ac3H11_3809at 24.609 kb on - strand, within Ac3H11_3809at 24.609 kb on - strand, within Ac3H11_3809at 24.609 kb on - strand, within Ac3H11_3809at 24.609 kb on - strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.612 kb on + strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.613 kb on - strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.614 kb on + strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.615 kb on - strand, within Ac3H11_3809at 24.689 kb on + strand, within Ac3H11_3809at 24.689 kb on + strand, within Ac3H11_3809

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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19,872 + Ac3H11_3806 0.54 -0.9
19,873 - Ac3H11_3806 0.54 -0.2
19,873 - Ac3H11_3806 0.54 +0.6
19,873 - Ac3H11_3806 0.54 -0.3
19,884 + Ac3H11_3806 0.55 +0.4
19,884 + Ac3H11_3806 0.55 -0.6
19,884 + Ac3H11_3806 0.55 +1.4
19,884 + Ac3H11_3806 0.55 -0.7
19,884 + Ac3H11_3806 0.55 -0.4
19,884 + Ac3H11_3806 0.55 -0.4
19,884 + Ac3H11_3806 0.55 +0.7
19,884 + Ac3H11_3806 0.55 -0.1
19,885 - Ac3H11_3806 0.56 +1.0
19,885 - Ac3H11_3806 0.56 -1.8
19,885 - Ac3H11_3806 0.56 +0.5
19,885 - Ac3H11_3806 0.56 +1.0
19,885 - Ac3H11_3806 0.56 -0.1
20,326 + Ac3H11_3807 0.23 +0.2
20,327 - Ac3H11_3807 0.23 +0.3
20,428 + Ac3H11_3807 0.41 +0.2
20,428 + Ac3H11_3807 0.41 +0.9
20,428 + Ac3H11_3807 0.41 +0.3
20,429 - Ac3H11_3807 0.42 -0.3
20,429 - Ac3H11_3807 0.42 +0.0
20,429 - Ac3H11_3807 0.42 +1.0
20,481 - Ac3H11_3807 0.51 +1.1
20,481 - Ac3H11_3807 0.51 -0.4
20,542 + Ac3H11_3807 0.62 +0.3
20,543 - Ac3H11_3807 0.62 -0.5
20,769 + +1.7
20,770 - -0.7
20,865 + -0.5
20,865 + -0.7
20,865 + +1.1
20,938 - -0.7
21,312 + Ac3H11_3808 0.17 +0.2
21,313 - Ac3H11_3808 0.17 -0.2
21,313 - Ac3H11_3808 0.17 +0.8
21,313 - Ac3H11_3808 0.17 +0.7
21,313 - Ac3H11_3808 0.17 +1.0
21,313 - Ac3H11_3808 0.17 +0.9
21,393 + Ac3H11_3808 0.20 -1.0
21,393 + Ac3H11_3808 0.20 +1.4
21,426 + Ac3H11_3808 0.21 -0.4
21,426 + Ac3H11_3808 0.21 -0.7
21,426 + Ac3H11_3808 0.21 +0.1
21,426 + Ac3H11_3808 0.21 -1.3
21,426 + Ac3H11_3808 0.21 -0.4
21,427 - Ac3H11_3808 0.21 +0.2
21,714 + Ac3H11_3808 0.31 +0.1
21,714 + Ac3H11_3808 0.31 -1.0
21,714 + Ac3H11_3808 0.31 -0.0
21,714 + Ac3H11_3808 0.31 +1.4
21,714 + Ac3H11_3808 0.31 +0.9
21,714 + Ac3H11_3808 0.31 -1.7
21,714 + Ac3H11_3808 0.31 +0.3
21,714 + Ac3H11_3808 0.31 -0.0
21,714 + Ac3H11_3808 0.31 +0.6
21,715 - Ac3H11_3808 0.31 -1.1
21,715 - Ac3H11_3808 0.31 -0.5
21,715 - Ac3H11_3808 0.31 -1.4
21,715 - Ac3H11_3808 0.31 +0.1
21,715 - Ac3H11_3808 0.31 -0.7
21,715 - Ac3H11_3808 0.31 +0.5
21,715 - Ac3H11_3808 0.31 -0.4
21,715 - Ac3H11_3808 0.31 -1.5
21,715 - Ac3H11_3808 0.31 +0.7
21,715 - Ac3H11_3808 0.31 +0.1
21,715 - Ac3H11_3808 0.31 -2.0
21,715 - Ac3H11_3808 0.31 +0.4
21,715 - Ac3H11_3808 0.31 +0.6
21,715 - Ac3H11_3808 0.31 +0.1
21,715 - Ac3H11_3808 0.31 +0.1
21,715 - Ac3H11_3808 0.31 -0.2
21,861 + Ac3H11_3808 0.36 -1.1
21,861 + Ac3H11_3808 0.36 +0.2
21,862 - Ac3H11_3808 0.36 +0.8
21,862 - Ac3H11_3808 0.36 +0.3
21,862 - Ac3H11_3808 0.36 +0.8
22,569 + Ac3H11_3808 0.61 -0.5
22,569 + Ac3H11_3808 0.61 +0.5
22,570 - Ac3H11_3808 0.61 +0.1
22,570 - Ac3H11_3808 0.61 +0.9
22,570 - Ac3H11_3808 0.61 +0.3
22,720 - Ac3H11_3808 0.66 +0.5
22,791 + Ac3H11_3808 0.68 -2.0
22,792 - Ac3H11_3808 0.68 -0.8
22,887 + Ac3H11_3808 0.72 +1.0
22,887 + Ac3H11_3808 0.72 -0.6
22,888 - Ac3H11_3808 0.72 +1.3
22,888 - Ac3H11_3808 0.72 -0.8
22,888 - Ac3H11_3808 0.72 -0.7
22,888 - Ac3H11_3808 0.72 -0.9
22,888 - Ac3H11_3808 0.72 -1.6
22,888 - Ac3H11_3808 0.72 -0.3
22,888 - Ac3H11_3808 0.72 +1.3
23,580 + +0.1
23,581 - -0.5
23,804 + -0.2
23,804 + +1.1
23,805 - -0.1
24,155 + Ac3H11_3809 0.24 -1.2
24,155 + Ac3H11_3809 0.24 -1.6
24,156 - Ac3H11_3809 0.24 +0.3
24,156 - Ac3H11_3809 0.24 +0.2
24,156 - Ac3H11_3809 0.24 +0.6
24,156 - Ac3H11_3809 0.24 +0.1
24,161 + Ac3H11_3809 0.24 -0.6
24,161 + Ac3H11_3809 0.24 -0.4
24,161 + Ac3H11_3809 0.24 -1.7
24,162 - Ac3H11_3809 0.24 +1.1
24,162 - Ac3H11_3809 0.24 +0.1
24,162 - Ac3H11_3809 0.24 +0.4
24,195 - Ac3H11_3809 0.26 +0.3
24,356 + Ac3H11_3809 0.34 +0.2
24,357 - Ac3H11_3809 0.34 +1.4
24,416 + Ac3H11_3809 0.37 +1.5
24,416 + Ac3H11_3809 0.37 +0.7
24,417 - Ac3H11_3809 0.37 -0.5
24,491 + Ac3H11_3809 0.41 -0.3
24,491 + Ac3H11_3809 0.41 +1.6
24,491 + Ac3H11_3809 0.41 +2.1
24,492 - Ac3H11_3809 0.41 -0.4
24,492 - Ac3H11_3809 0.41 -1.5
24,492 - Ac3H11_3809 0.41 -0.6
24,492 - Ac3H11_3809 0.41 +0.5
24,492 - Ac3H11_3809 0.41 +0.5
24,594 - Ac3H11_3809 0.47 +0.2
24,608 + Ac3H11_3809 0.47 +0.9
24,608 + Ac3H11_3809 0.47 -0.1
24,608 + Ac3H11_3809 0.47 -0.1
24,609 - Ac3H11_3809 0.47 +0.4
24,609 - Ac3H11_3809 0.47 +0.5
24,609 - Ac3H11_3809 0.47 +0.8
24,609 - Ac3H11_3809 0.47 -1.1
24,612 + Ac3H11_3809 0.48 -1.1
24,612 + Ac3H11_3809 0.48 +1.6
24,612 + Ac3H11_3809 0.48 -0.7
24,612 + Ac3H11_3809 0.48 +0.5
24,612 + Ac3H11_3809 0.48 -0.6
24,612 + Ac3H11_3809 0.48 +0.3
24,612 + Ac3H11_3809 0.48 +0.0
24,612 + Ac3H11_3809 0.48 -0.4
24,612 + Ac3H11_3809 0.48 +0.6
24,613 - Ac3H11_3809 0.48 -0.4
24,613 - Ac3H11_3809 0.48 +0.3
24,613 - Ac3H11_3809 0.48 -0.9
24,613 - Ac3H11_3809 0.48 +0.4
24,613 - Ac3H11_3809 0.48 +0.1
24,613 - Ac3H11_3809 0.48 -0.1
24,613 - Ac3H11_3809 0.48 -0.2
24,614 + Ac3H11_3809 0.48 +0.3
24,614 + Ac3H11_3809 0.48 -1.1
24,614 + Ac3H11_3809 0.48 +0.1
24,614 + Ac3H11_3809 0.48 +0.2
24,614 + Ac3H11_3809 0.48 +1.0
24,614 + Ac3H11_3809 0.48 -0.2
24,614 + Ac3H11_3809 0.48 +0.8
24,614 + Ac3H11_3809 0.48 +0.3
24,614 + Ac3H11_3809 0.48 +0.2
24,614 + Ac3H11_3809 0.48 +1.1
24,614 + Ac3H11_3809 0.48 +1.3
24,614 + Ac3H11_3809 0.48 +0.1
24,614 + Ac3H11_3809 0.48 +0.0
24,614 + Ac3H11_3809 0.48 -0.7
24,614 + Ac3H11_3809 0.48 -0.7
24,614 + Ac3H11_3809 0.48 +0.3
24,614 + Ac3H11_3809 0.48 +0.7
24,614 + Ac3H11_3809 0.48 +0.4
24,614 + Ac3H11_3809 0.48 +0.7
24,614 + Ac3H11_3809 0.48 +0.2
24,614 + Ac3H11_3809 0.48 -0.6
24,614 + Ac3H11_3809 0.48 -0.9
24,614 + Ac3H11_3809 0.48 +1.1
24,614 + Ac3H11_3809 0.48 -0.1
24,614 + Ac3H11_3809 0.48 -0.7
24,614 + Ac3H11_3809 0.48 +0.0
24,614 + Ac3H11_3809 0.48 +3.3
24,614 + Ac3H11_3809 0.48 +0.9
24,615 - Ac3H11_3809 0.48 -0.1
24,615 - Ac3H11_3809 0.48 +1.0
24,615 - Ac3H11_3809 0.48 +1.0
24,615 - Ac3H11_3809 0.48 -0.3
24,615 - Ac3H11_3809 0.48 +0.7
24,615 - Ac3H11_3809 0.48 +1.3
24,615 - Ac3H11_3809 0.48 +1.8
24,615 - Ac3H11_3809 0.48 +0.5
24,615 - Ac3H11_3809 0.48 -0.9
24,615 - Ac3H11_3809 0.48 +0.7
24,615 - Ac3H11_3809 0.48 +0.6
24,615 - Ac3H11_3809 0.48 -0.7
24,615 - Ac3H11_3809 0.48 -0.7
24,615 - Ac3H11_3809 0.48 -0.1
24,615 - Ac3H11_3809 0.48 +0.9
24,615 - Ac3H11_3809 0.48 -0.9
24,615 - Ac3H11_3809 0.48 +0.5
24,615 - Ac3H11_3809 0.48 +1.5
24,615 - Ac3H11_3809 0.48 +0.5
24,615 - Ac3H11_3809 0.48 +0.4
24,615 - Ac3H11_3809 0.48 -0.2
24,615 - Ac3H11_3809 0.48 -0.7
24,615 - Ac3H11_3809 0.48 +0.3
24,615 - Ac3H11_3809 0.48 +1.4
24,689 + Ac3H11_3809 0.52 +0.2
24,689 + Ac3H11_3809 0.52 -0.4

Or see this region's nucleotide sequence