Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3321

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3320 and Ac3H11_3321 are separated by 30 nucleotidesAc3H11_3321 and Ac3H11_3322 are separated by 43 nucleotides Ac3H11_3320 - Choline dehydrogenase (EC 1.1.99.1), at 341 to 2,029 _3320 Ac3H11_3321 - hypothetical protein, at 2,060 to 2,392 _3321 Ac3H11_3322 - Ammonium transporter, at 2,436 to 3,791 _3322 Position (kb) 2 3Strain fitness (log2 ratio) -2 -1 0 1 2at 1.382 kb on + strand, within Ac3H11_3320at 1.463 kb on + strand, within Ac3H11_3320at 1.478 kb on + strand, within Ac3H11_3320at 1.479 kb on - strand, within Ac3H11_3320at 1.479 kb on - strand, within Ac3H11_3320at 1.634 kb on + strand, within Ac3H11_3320at 1.634 kb on + strand, within Ac3H11_3320at 1.634 kb on + strand, within Ac3H11_3320at 1.634 kb on + strand, within Ac3H11_3320at 1.634 kb on + strand, within Ac3H11_3320at 1.634 kb on + strand, within Ac3H11_3320at 1.635 kb on - strand, within Ac3H11_3320at 1.635 kb on - strand, within Ac3H11_3320at 1.635 kb on - strand, within Ac3H11_3320at 1.663 kb on - strand, within Ac3H11_3320at 1.978 kb on + strandat 2.079 kb on + strandat 2.079 kb on + strandat 2.286 kb on + strand, within Ac3H11_3321at 2.445 kb on + strandat 2.446 kb on - strandat 2.560 kb on + strandat 2.561 kb on - strandat 2.561 kb on - strandat 2.743 kb on + strand, within Ac3H11_3322at 2.743 kb on + strand, within Ac3H11_3322at 2.744 kb on - strand, within Ac3H11_3322at 2.744 kb on - strand, within Ac3H11_3322at 3.043 kb on + strand, within Ac3H11_3322at 3.043 kb on + strand, within Ac3H11_3322at 3.044 kb on - strand, within Ac3H11_3322at 3.214 kb on + strand, within Ac3H11_3322at 3.214 kb on + strand, within Ac3H11_3322at 3.214 kb on + strand, within Ac3H11_3322at 3.215 kb on - strand, within Ac3H11_3322at 3.334 kb on + strand, within Ac3H11_3322at 3.334 kb on + strand, within Ac3H11_3322at 3.334 kb on + strand, within Ac3H11_3322at 3.335 kb on - strand, within Ac3H11_3322at 3.335 kb on - strand, within Ac3H11_3322at 3.335 kb on - strand, within Ac3H11_3322at 3.335 kb on - strand, within Ac3H11_3322at 3.335 kb on - strand, within Ac3H11_3322

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,382 + Ac3H11_3320 0.62 +0.9
1,463 + Ac3H11_3320 0.66 -0.6
1,478 + Ac3H11_3320 0.67 -0.4
1,479 - Ac3H11_3320 0.67 +1.1
1,479 - Ac3H11_3320 0.67 -0.3
1,634 + Ac3H11_3320 0.77 +0.6
1,634 + Ac3H11_3320 0.77 -0.9
1,634 + Ac3H11_3320 0.77 +1.9
1,634 + Ac3H11_3320 0.77 +0.6
1,634 + Ac3H11_3320 0.77 +1.0
1,634 + Ac3H11_3320 0.77 -0.2
1,635 - Ac3H11_3320 0.77 +0.6
1,635 - Ac3H11_3320 0.77 +0.6
1,635 - Ac3H11_3320 0.77 +0.3
1,663 - Ac3H11_3320 0.78 -0.2
1,978 + +0.9
2,079 + -0.5
2,079 + +0.1
2,286 + Ac3H11_3321 0.68 +0.9
2,445 + +0.0
2,446 - -0.3
2,560 + -0.1
2,561 - -0.5
2,561 - +0.9
2,743 + Ac3H11_3322 0.23 +0.5
2,743 + Ac3H11_3322 0.23 +0.4
2,744 - Ac3H11_3322 0.23 -0.9
2,744 - Ac3H11_3322 0.23 -0.2
3,043 + Ac3H11_3322 0.45 -0.6
3,043 + Ac3H11_3322 0.45 +0.7
3,044 - Ac3H11_3322 0.45 +0.9
3,214 + Ac3H11_3322 0.57 -0.1
3,214 + Ac3H11_3322 0.57 +0.8
3,214 + Ac3H11_3322 0.57 -0.2
3,215 - Ac3H11_3322 0.57 -0.1
3,334 + Ac3H11_3322 0.66 -0.4
3,334 + Ac3H11_3322 0.66 -0.4
3,334 + Ac3H11_3322 0.66 -0.4
3,335 - Ac3H11_3322 0.66 -0.5
3,335 - Ac3H11_3322 0.66 -1.0
3,335 - Ac3H11_3322 0.66 +1.1
3,335 - Ac3H11_3322 0.66 -0.0
3,335 - Ac3H11_3322 0.66 -2.0

Or see this region's nucleotide sequence