Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1834

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1832 and Ac3H11_1833 are separated by 119 nucleotidesAc3H11_1833 and Ac3H11_1834 are separated by 62 nucleotidesAc3H11_1834 and Ac3H11_1835 are separated by 114 nucleotidesAc3H11_1835 and Ac3H11_1836 are separated by 186 nucleotides Ac3H11_1832 - Glutathione S-transferase (EC 2.5.1.18), at 32,449 to 33,141 _1832 Ac3H11_1833 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 33,261 to 33,743 _1833 Ac3H11_1834 - Soluble lytic murein transglycosylase precursor (EC 3.2.1.-), at 33,806 to 35,833 _1834 Ac3H11_1835 - hypothetical protein, at 35,948 to 36,529 _1835 Ac3H11_1836 - hypothetical protein, at 36,716 to 37,102 _1836 Position (kb) 33 34 35 36Strain fitness (log2 ratio) -2 -1 0 1 2at 32.913 kb on - strand, within Ac3H11_1832at 32.913 kb on - strand, within Ac3H11_1832at 32.913 kb on - strand, within Ac3H11_1832at 32.913 kb on - strand, within Ac3H11_1832at 32.913 kb on - strand, within Ac3H11_1832at 32.913 kb on - strand, within Ac3H11_1832at 32.913 kb on - strand, within Ac3H11_1832at 33.110 kb on + strandat 33.110 kb on + strandat 33.110 kb on + strandat 33.110 kb on + strandat 33.110 kb on + strandat 33.110 kb on + strandat 33.110 kb on + strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.129 kb on - strandat 33.129 kb on - strandat 33.129 kb on - strandat 33.179 kb on + strandat 33.409 kb on + strand, within Ac3H11_1833at 33.409 kb on + strand, within Ac3H11_1833at 33.409 kb on + strand, within Ac3H11_1833at 33.409 kb on + strand, within Ac3H11_1833at 33.409 kb on + strand, within Ac3H11_1833at 33.410 kb on - strand, within Ac3H11_1833at 33.410 kb on - strand, within Ac3H11_1833at 33.410 kb on - strand, within Ac3H11_1833at 33.410 kb on - strand, within Ac3H11_1833at 33.410 kb on - strand, within Ac3H11_1833at 33.424 kb on + strand, within Ac3H11_1833at 33.425 kb on - strand, within Ac3H11_1833at 33.452 kb on - strand, within Ac3H11_1833at 33.520 kb on + strand, within Ac3H11_1833at 33.521 kb on - strand, within Ac3H11_1833at 33.521 kb on - strand, within Ac3H11_1833at 33.551 kb on - strand, within Ac3H11_1833at 33.697 kb on + strandat 33.698 kb on - strandat 33.698 kb on - strandat 33.753 kb on + strandat 33.754 kb on - strandat 33.771 kb on + strandat 33.772 kb on - strandat 33.772 kb on - strandat 33.801 kb on + strandat 33.801 kb on + strandat 33.801 kb on + strandat 33.838 kb on + strandat 33.838 kb on + strandat 33.838 kb on + strandat 33.838 kb on + strandat 33.838 kb on + strandat 33.839 kb on - strandat 33.839 kb on - strandat 33.839 kb on - strandat 33.839 kb on - strandat 33.839 kb on - strandat 34.046 kb on + strand, within Ac3H11_1834at 34.124 kb on + strand, within Ac3H11_1834at 34.124 kb on + strand, within Ac3H11_1834at 34.125 kb on - strand, within Ac3H11_1834at 34.244 kb on + strand, within Ac3H11_1834at 34.245 kb on - strand, within Ac3H11_1834at 34.316 kb on + strand, within Ac3H11_1834at 34.367 kb on + strand, within Ac3H11_1834at 34.367 kb on + strand, within Ac3H11_1834at 34.367 kb on + strand, within Ac3H11_1834at 34.367 kb on + strand, within Ac3H11_1834at 34.368 kb on - strand, within Ac3H11_1834at 34.368 kb on - strand, within Ac3H11_1834at 34.368 kb on - strand, within Ac3H11_1834at 34.373 kb on + strand, within Ac3H11_1834at 34.373 kb on + strand, within Ac3H11_1834at 34.374 kb on - strand, within Ac3H11_1834at 34.374 kb on - strand, within Ac3H11_1834at 34.374 kb on - strand, within Ac3H11_1834at 34.374 kb on - strand, within Ac3H11_1834at 34.374 kb on - strand, within Ac3H11_1834at 34.374 kb on - strand, within Ac3H11_1834at 34.731 kb on - strand, within Ac3H11_1834at 34.880 kb on + strand, within Ac3H11_1834at 34.980 kb on - strand, within Ac3H11_1834at 34.980 kb on - strand, within Ac3H11_1834at 35.100 kb on - strand, within Ac3H11_1834at 35.147 kb on + strand, within Ac3H11_1834at 35.147 kb on + strand, within Ac3H11_1834at 35.354 kb on + strand, within Ac3H11_1834at 35.354 kb on + strand, within Ac3H11_1834at 35.354 kb on + strand, within Ac3H11_1834at 35.355 kb on - strand, within Ac3H11_1834at 35.355 kb on - strand, within Ac3H11_1834at 35.355 kb on - strand, within Ac3H11_1834at 35.355 kb on - strand, within Ac3H11_1834at 35.355 kb on - strand, within Ac3H11_1834at 35.355 kb on - strand, within Ac3H11_1834at 35.361 kb on - strand, within Ac3H11_1834at 35.476 kb on + strand, within Ac3H11_1834at 35.477 kb on - strand, within Ac3H11_1834at 35.540 kb on + strand, within Ac3H11_1834at 35.597 kb on + strand, within Ac3H11_1834at 35.598 kb on - strand, within Ac3H11_1834at 35.696 kb on + strandat 35.696 kb on + strandat 35.729 kb on + strandat 36.026 kb on + strand, within Ac3H11_1835at 36.027 kb on - strand, within Ac3H11_1835at 36.027 kb on - strand, within Ac3H11_1835at 36.059 kb on + strand, within Ac3H11_1835at 36.060 kb on - strand, within Ac3H11_1835at 36.060 kb on - strand, within Ac3H11_1835at 36.173 kb on + strand, within Ac3H11_1835at 36.173 kb on + strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.256 kb on + strand, within Ac3H11_1835at 36.356 kb on + strand, within Ac3H11_1835at 36.356 kb on + strand, within Ac3H11_1835at 36.357 kb on - strand, within Ac3H11_1835at 36.416 kb on + strand, within Ac3H11_1835at 36.416 kb on + strandat 36.417 kb on - strand, within Ac3H11_1835at 36.417 kb on - strand, within Ac3H11_1835at 36.417 kb on - strand, within Ac3H11_1835at 36.464 kb on + strand, within Ac3H11_1835at 36.464 kb on + strand, within Ac3H11_1835at 36.465 kb on - strand, within Ac3H11_1835at 36.465 kb on - strand, within Ac3H11_1835at 36.465 kb on - strand, within Ac3H11_1835at 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.527 kb on + strandat 36.527 kb on + strandat 36.527 kb on + strandat 36.527 kb on + strandat 36.527 kb on + strandat 36.528 kb on - strandat 36.528 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
32,913 - Ac3H11_1832 0.67 -0.2
32,913 - Ac3H11_1832 0.67 +0.5
32,913 - Ac3H11_1832 0.67 -0.8
32,913 - Ac3H11_1832 0.67 -0.2
32,913 - Ac3H11_1832 0.67 +0.6
32,913 - Ac3H11_1832 0.67 +0.2
32,913 - Ac3H11_1832 0.67 +0.2
33,110 + +0.1
33,110 + -1.5
33,110 + +0.5
33,110 + +0.2
33,110 + -1.4
33,110 + +0.9
33,110 + -0.7
33,111 - -0.3
33,111 - -1.6
33,111 - -0.1
33,111 - -0.1
33,111 - +0.4
33,111 - +0.4
33,111 - +0.5
33,111 - -0.3
33,111 - -0.0
33,111 - +0.0
33,129 - +0.7
33,129 - +0.4
33,129 - -0.6
33,179 + +0.6
33,409 + Ac3H11_1833 0.31 +0.1
33,409 + Ac3H11_1833 0.31 +0.2
33,409 + Ac3H11_1833 0.31 -0.2
33,409 + Ac3H11_1833 0.31 +0.0
33,409 + Ac3H11_1833 0.31 +1.1
33,410 - Ac3H11_1833 0.31 +0.2
33,410 - Ac3H11_1833 0.31 -0.9
33,410 - Ac3H11_1833 0.31 +0.4
33,410 - Ac3H11_1833 0.31 +0.3
33,410 - Ac3H11_1833 0.31 +0.2
33,424 + Ac3H11_1833 0.34 +0.9
33,425 - Ac3H11_1833 0.34 +1.1
33,452 - Ac3H11_1833 0.40 -1.2
33,520 + Ac3H11_1833 0.54 +0.2
33,521 - Ac3H11_1833 0.54 +0.5
33,521 - Ac3H11_1833 0.54 +0.8
33,551 - Ac3H11_1833 0.60 +1.4
33,697 + +0.4
33,698 - +0.9
33,698 - -0.4
33,753 + +0.4
33,754 - +2.7
33,771 + +0.5
33,772 - +0.2
33,772 - -0.4
33,801 + -0.1
33,801 + +0.2
33,801 + +0.5
33,838 + -0.1
33,838 + -0.5
33,838 + +0.3
33,838 + +0.5
33,838 + -1.2
33,839 - -0.5
33,839 - +0.5
33,839 - -0.0
33,839 - +0.9
33,839 - -1.3
34,046 + Ac3H11_1834 0.12 +0.2
34,124 + Ac3H11_1834 0.16 -0.9
34,124 + Ac3H11_1834 0.16 -1.1
34,125 - Ac3H11_1834 0.16 -0.2
34,244 + Ac3H11_1834 0.22 +0.2
34,245 - Ac3H11_1834 0.22 -2.7
34,316 + Ac3H11_1834 0.25 -0.2
34,367 + Ac3H11_1834 0.28 -0.2
34,367 + Ac3H11_1834 0.28 +0.7
34,367 + Ac3H11_1834 0.28 -0.9
34,367 + Ac3H11_1834 0.28 -1.0
34,368 - Ac3H11_1834 0.28 -1.2
34,368 - Ac3H11_1834 0.28 +0.3
34,368 - Ac3H11_1834 0.28 +0.4
34,373 + Ac3H11_1834 0.28 -0.5
34,373 + Ac3H11_1834 0.28 +0.2
34,374 - Ac3H11_1834 0.28 -0.1
34,374 - Ac3H11_1834 0.28 -1.4
34,374 - Ac3H11_1834 0.28 -2.2
34,374 - Ac3H11_1834 0.28 -2.4
34,374 - Ac3H11_1834 0.28 -0.9
34,374 - Ac3H11_1834 0.28 -2.6
34,731 - Ac3H11_1834 0.46 -0.6
34,880 + Ac3H11_1834 0.53 -1.3
34,980 - Ac3H11_1834 0.58 -1.7
34,980 - Ac3H11_1834 0.58 -1.6
35,100 - Ac3H11_1834 0.64 -0.4
35,147 + Ac3H11_1834 0.66 +0.3
35,147 + Ac3H11_1834 0.66 +1.2
35,354 + Ac3H11_1834 0.76 +0.1
35,354 + Ac3H11_1834 0.76 -0.9
35,354 + Ac3H11_1834 0.76 +0.3
35,355 - Ac3H11_1834 0.76 +0.1
35,355 - Ac3H11_1834 0.76 -0.4
35,355 - Ac3H11_1834 0.76 -0.8
35,355 - Ac3H11_1834 0.76 -1.9
35,355 - Ac3H11_1834 0.76 -1.4
35,355 - Ac3H11_1834 0.76 -2.0
35,361 - Ac3H11_1834 0.77 -0.0
35,476 + Ac3H11_1834 0.82 -0.2
35,477 - Ac3H11_1834 0.82 -0.9
35,540 + Ac3H11_1834 0.86 -0.8
35,597 + Ac3H11_1834 0.88 +1.2
35,598 - Ac3H11_1834 0.88 +0.6
35,696 + -1.7
35,696 + -1.6
35,729 + -0.1
36,026 + Ac3H11_1835 0.13 +1.0
36,027 - Ac3H11_1835 0.14 +0.3
36,027 - Ac3H11_1835 0.14 +1.1
36,059 + Ac3H11_1835 0.19 -0.3
36,060 - Ac3H11_1835 0.19 -2.0
36,060 - Ac3H11_1835 0.19 +0.3
36,173 + Ac3H11_1835 0.39 -1.0
36,173 + Ac3H11_1835 0.39 +0.8
36,174 - Ac3H11_1835 0.39 +0.3
36,174 - Ac3H11_1835 0.39 -0.3
36,174 - Ac3H11_1835 0.39 -0.7
36,174 - Ac3H11_1835 0.39 -1.1
36,174 - Ac3H11_1835 0.39 +1.4
36,174 - Ac3H11_1835 0.39 -1.2
36,256 + Ac3H11_1835 0.53 -0.3
36,356 + Ac3H11_1835 0.70 -1.8
36,356 + Ac3H11_1835 0.70 -0.4
36,357 - Ac3H11_1835 0.70 +0.4
36,416 + Ac3H11_1835 0.80 +0.9
36,416 + +1.9
36,417 - Ac3H11_1835 0.81 -1.0
36,417 - Ac3H11_1835 0.81 -0.4
36,417 - Ac3H11_1835 0.81 -1.0
36,464 + Ac3H11_1835 0.89 +0.6
36,464 + Ac3H11_1835 0.89 +0.7
36,465 - Ac3H11_1835 0.89 -0.0
36,465 - Ac3H11_1835 0.89 +0.3
36,465 - Ac3H11_1835 0.89 -0.7
36,515 + -0.6
36,515 + +0.1
36,515 + +0.5
36,515 + +0.1
36,515 + +0.2
36,515 + +1.0
36,515 + -0.4
36,515 + +0.4
36,516 - +0.2
36,516 - +0.2
36,516 - -1.1
36,516 - -0.7
36,516 - -1.2
36,516 - -0.3
36,516 - +0.0
36,527 + +0.4
36,527 + -0.0
36,527 + -0.2
36,527 + -0.9
36,527 + +0.3
36,528 - +0.5
36,528 - +0.1

Or see this region's nucleotide sequence