Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1639

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1638 and Ac3H11_1639 are separated by 287 nucleotidesAc3H11_1639 and Ac3H11_1640 are separated by 51 nucleotides Ac3H11_1638 - Dienelactone hydrolase family, at 228,577 to 229,473 _1638 Ac3H11_1639 - Probable two-component response regulator, at 229,761 to 232,151 _1639 Ac3H11_1640 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 232,203 to 233,105 _1640 Position (kb) 229 230 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2 3at 228.794 kb on + strand, within Ac3H11_1638at 228.795 kb on - strand, within Ac3H11_1638at 228.795 kb on - strand, within Ac3H11_1638at 228.795 kb on - strand, within Ac3H11_1638at 228.795 kb on - strand, within Ac3H11_1638at 228.795 kb on - strand, within Ac3H11_1638at 228.884 kb on + strand, within Ac3H11_1638at 228.884 kb on + strand, within Ac3H11_1638at 228.884 kb on + strand, within Ac3H11_1638at 228.885 kb on - strand, within Ac3H11_1638at 228.923 kb on + strand, within Ac3H11_1638at 228.924 kb on - strand, within Ac3H11_1638at 228.924 kb on - strand, within Ac3H11_1638at 228.924 kb on - strand, within Ac3H11_1638at 229.088 kb on + strand, within Ac3H11_1638at 229.088 kb on + strand, within Ac3H11_1638at 229.115 kb on + strand, within Ac3H11_1638at 229.115 kb on + strand, within Ac3H11_1638at 229.178 kb on + strand, within Ac3H11_1638at 229.178 kb on + strand, within Ac3H11_1638at 229.178 kb on + strand, within Ac3H11_1638at 229.179 kb on - strandat 229.179 kb on - strand, within Ac3H11_1638at 229.364 kb on + strand, within Ac3H11_1638at 229.364 kb on + strand, within Ac3H11_1638at 229.523 kb on - strandat 230.070 kb on + strand, within Ac3H11_1639at 230.070 kb on + strand, within Ac3H11_1639at 230.070 kb on + strand, within Ac3H11_1639at 230.070 kb on + strand, within Ac3H11_1639at 230.070 kb on + strand, within Ac3H11_1639at 230.071 kb on - strand, within Ac3H11_1639at 230.071 kb on - strand, within Ac3H11_1639at 230.110 kb on - strand, within Ac3H11_1639at 230.475 kb on + strand, within Ac3H11_1639at 230.476 kb on - strand, within Ac3H11_1639at 230.565 kb on + strand, within Ac3H11_1639at 230.565 kb on + strand, within Ac3H11_1639at 230.565 kb on + strand, within Ac3H11_1639at 230.566 kb on - strand, within Ac3H11_1639at 230.566 kb on - strand, within Ac3H11_1639at 230.691 kb on + strand, within Ac3H11_1639at 230.692 kb on - strand, within Ac3H11_1639at 230.692 kb on - strand, within Ac3H11_1639at 230.931 kb on + strand, within Ac3H11_1639at 230.932 kb on - strand, within Ac3H11_1639at 230.932 kb on - strand, within Ac3H11_1639at 230.946 kb on + strand, within Ac3H11_1639at 230.946 kb on + strand, within Ac3H11_1639at 230.947 kb on - strand, within Ac3H11_1639at 230.988 kb on + strand, within Ac3H11_1639at 231.123 kb on + strand, within Ac3H11_1639at 231.124 kb on - strand, within Ac3H11_1639at 231.124 kb on - strand, within Ac3H11_1639at 231.124 kb on - strand, within Ac3H11_1639at 231.147 kb on + strand, within Ac3H11_1639at 231.147 kb on + strand, within Ac3H11_1639at 231.147 kb on + strand, within Ac3H11_1639at 231.148 kb on - strand, within Ac3H11_1639at 231.148 kb on - strand, within Ac3H11_1639at 231.148 kb on - strand, within Ac3H11_1639at 231.148 kb on - strand, within Ac3H11_1639at 231.336 kb on + strand, within Ac3H11_1639at 231.336 kb on + strand, within Ac3H11_1639at 231.336 kb on + strand, within Ac3H11_1639at 231.337 kb on - strand, within Ac3H11_1639at 231.393 kb on + strand, within Ac3H11_1639at 231.394 kb on - strand, within Ac3H11_1639at 231.415 kb on - strand, within Ac3H11_1639at 231.774 kb on + strand, within Ac3H11_1639at 231.774 kb on + strand, within Ac3H11_1639at 231.775 kb on - strand, within Ac3H11_1639at 231.775 kb on - strand, within Ac3H11_1639at 231.775 kb on - strand, within Ac3H11_1639at 231.786 kb on + strand, within Ac3H11_1639at 231.786 kb on + strand, within Ac3H11_1639at 231.786 kb on + strand, within Ac3H11_1639at 231.786 kb on + strand, within Ac3H11_1639at 231.787 kb on - strand, within Ac3H11_1639at 231.787 kb on - strand, within Ac3H11_1639at 231.845 kb on + strand, within Ac3H11_1639at 231.846 kb on - strand, within Ac3H11_1639at 231.876 kb on + strand, within Ac3H11_1639at 232.095 kb on + strandat 232.095 kb on + strandat 232.204 kb on + strandat 232.216 kb on + strandat 232.216 kb on + strandat 232.216 kb on + strandat 232.217 kb on - strandat 232.217 kb on - strandat 232.217 kb on - strandat 232.217 kb on - strandat 232.217 kb on - strandat 232.228 kb on + strandat 232.228 kb on + strandat 232.228 kb on + strandat 232.315 kb on + strand, within Ac3H11_1640at 232.483 kb on + strand, within Ac3H11_1640at 232.484 kb on - strand, within Ac3H11_1640at 232.918 kb on + strand, within Ac3H11_1640at 232.918 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.945 kb on + strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640at 232.946 kb on - strand, within Ac3H11_1640

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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228,794 + Ac3H11_1638 0.24 -0.8
228,795 - Ac3H11_1638 0.24 -0.4
228,795 - Ac3H11_1638 0.24 -0.0
228,795 - Ac3H11_1638 0.24 -0.3
228,795 - Ac3H11_1638 0.24 -1.0
228,795 - Ac3H11_1638 0.24 -1.2
228,884 + Ac3H11_1638 0.34 -0.3
228,884 + Ac3H11_1638 0.34 -0.7
228,884 + Ac3H11_1638 0.34 -0.0
228,885 - Ac3H11_1638 0.34 +1.0
228,923 + Ac3H11_1638 0.39 +0.5
228,924 - Ac3H11_1638 0.39 +0.1
228,924 - Ac3H11_1638 0.39 -0.3
228,924 - Ac3H11_1638 0.39 +0.3
229,088 + Ac3H11_1638 0.57 -0.8
229,088 + Ac3H11_1638 0.57 -0.1
229,115 + Ac3H11_1638 0.60 -0.9
229,115 + Ac3H11_1638 0.60 -0.8
229,178 + Ac3H11_1638 0.67 +0.2
229,178 + Ac3H11_1638 0.67 -1.3
229,178 + Ac3H11_1638 0.67 -1.4
229,179 - +0.1
229,179 - Ac3H11_1638 0.67 -1.2
229,364 + Ac3H11_1638 0.88 +0.3
229,364 + Ac3H11_1638 0.88 -0.2
229,523 - -1.0
230,070 + Ac3H11_1639 0.13 +0.2
230,070 + Ac3H11_1639 0.13 -0.2
230,070 + Ac3H11_1639 0.13 -0.7
230,070 + Ac3H11_1639 0.13 -0.1
230,070 + Ac3H11_1639 0.13 -0.6
230,071 - Ac3H11_1639 0.13 -0.2
230,071 - Ac3H11_1639 0.13 +0.6
230,110 - Ac3H11_1639 0.15 -0.2
230,475 + Ac3H11_1639 0.30 +0.4
230,476 - Ac3H11_1639 0.30 +0.3
230,565 + Ac3H11_1639 0.34 +0.3
230,565 + Ac3H11_1639 0.34 +0.5
230,565 + Ac3H11_1639 0.34 +1.4
230,566 - Ac3H11_1639 0.34 +0.3
230,566 - Ac3H11_1639 0.34 +0.5
230,691 + Ac3H11_1639 0.39 +0.1
230,692 - Ac3H11_1639 0.39 -0.2
230,692 - Ac3H11_1639 0.39 +0.3
230,931 + Ac3H11_1639 0.49 -1.5
230,932 - Ac3H11_1639 0.49 -0.1
230,932 - Ac3H11_1639 0.49 -0.0
230,946 + Ac3H11_1639 0.50 +0.6
230,946 + Ac3H11_1639 0.50 +0.5
230,947 - Ac3H11_1639 0.50 +0.4
230,988 + Ac3H11_1639 0.51 -0.2
231,123 + Ac3H11_1639 0.57 -1.5
231,124 - Ac3H11_1639 0.57 -0.3
231,124 - Ac3H11_1639 0.57 +3.3
231,124 - Ac3H11_1639 0.57 -1.2
231,147 + Ac3H11_1639 0.58 -0.4
231,147 + Ac3H11_1639 0.58 -0.4
231,147 + Ac3H11_1639 0.58 +0.9
231,148 - Ac3H11_1639 0.58 -0.6
231,148 - Ac3H11_1639 0.58 +0.1
231,148 - Ac3H11_1639 0.58 +0.6
231,148 - Ac3H11_1639 0.58 +0.3
231,336 + Ac3H11_1639 0.66 -0.8
231,336 + Ac3H11_1639 0.66 +0.1
231,336 + Ac3H11_1639 0.66 +0.4
231,337 - Ac3H11_1639 0.66 +1.3
231,393 + Ac3H11_1639 0.68 -0.4
231,394 - Ac3H11_1639 0.68 +1.0
231,415 - Ac3H11_1639 0.69 +0.4
231,774 + Ac3H11_1639 0.84 -0.4
231,774 + Ac3H11_1639 0.84 +0.9
231,775 - Ac3H11_1639 0.84 -1.2
231,775 - Ac3H11_1639 0.84 -0.5
231,775 - Ac3H11_1639 0.84 -0.5
231,786 + Ac3H11_1639 0.85 -0.3
231,786 + Ac3H11_1639 0.85 +0.2
231,786 + Ac3H11_1639 0.85 +0.2
231,786 + Ac3H11_1639 0.85 -0.5
231,787 - Ac3H11_1639 0.85 +0.5
231,787 - Ac3H11_1639 0.85 +0.4
231,845 + Ac3H11_1639 0.87 +1.0
231,846 - Ac3H11_1639 0.87 -0.6
231,876 + Ac3H11_1639 0.88 +0.3
232,095 + +0.5
232,095 + -0.2
232,204 + +0.0
232,216 + +0.2
232,216 + -0.4
232,216 + -0.2
232,217 - -0.6
232,217 - -0.4
232,217 - +1.0
232,217 - +0.2
232,217 - -0.5
232,228 + +1.6
232,228 + -0.3
232,228 + +0.1
232,315 + Ac3H11_1640 0.12 -0.1
232,483 + Ac3H11_1640 0.31 +1.0
232,484 - Ac3H11_1640 0.31 +1.2
232,918 + Ac3H11_1640 0.79 -0.7
232,918 + Ac3H11_1640 0.79 +2.9
232,945 + Ac3H11_1640 0.82 +0.3
232,945 + Ac3H11_1640 0.82 +0.0
232,945 + Ac3H11_1640 0.82 +0.7
232,945 + Ac3H11_1640 0.82 +0.7
232,945 + Ac3H11_1640 0.82 +1.1
232,945 + Ac3H11_1640 0.82 +0.4
232,945 + Ac3H11_1640 0.82 -0.2
232,945 + Ac3H11_1640 0.82 -0.6
232,945 + Ac3H11_1640 0.82 +1.2
232,945 + Ac3H11_1640 0.82 +0.8
232,945 + Ac3H11_1640 0.82 -0.9
232,946 - Ac3H11_1640 0.82 +0.5
232,946 - Ac3H11_1640 0.82 -1.3
232,946 - Ac3H11_1640 0.82 -0.1
232,946 - Ac3H11_1640 0.82 +0.0
232,946 - Ac3H11_1640 0.82 +0.4
232,946 - Ac3H11_1640 0.82 +0.1
232,946 - Ac3H11_1640 0.82 -0.6
232,946 - Ac3H11_1640 0.82 -2.0
232,946 - Ac3H11_1640 0.82 -0.3
232,946 - Ac3H11_1640 0.82 +0.9

Or see this region's nucleotide sequence