Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_151 and Ac3H11_152 are separated by 36 nucleotides Ac3H11_152 and Ac3H11_153 are separated by 106 nucleotides Ac3H11_153 and Ac3H11_154 are separated by 106 nucleotides
Ac3H11_151 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 35,127 to 36,611
_151
Ac3H11_152 - hypothetical protein, at 36,648 to 36,797
_152
Ac3H11_153 - Similar to 5-oxoprolinase (EC 3.5.2.9) and Methylhydantoinases A, B (EC 3.5.2.14), contradiction in experimental data (see Annotation), at 36,904 to 40,548
_153
Ac3H11_154 - TRAP transporter solute receptor, unknown substrate 5, at 40,655 to 41,620
_154
Position (kb) 36
37
38
39
40
41 Strain fitness (log2 ratio) -2
-1
0
1 at 36.205 kb on + strand, within Ac3H11_151 at 36.444 kb on + strand, within Ac3H11_151 at 36.444 kb on + strand, within Ac3H11_151 at 36.650 kb on - strand at 36.780 kb on - strand, within Ac3H11_152 at 36.791 kb on - strand at 37.199 kb on + strand at 37.368 kb on - strand, within Ac3H11_153 at 37.604 kb on + strand, within Ac3H11_153 at 37.604 kb on + strand, within Ac3H11_153 at 37.605 kb on - strand, within Ac3H11_153 at 37.605 kb on - strand, within Ac3H11_153 at 37.605 kb on - strand, within Ac3H11_153 at 37.605 kb on - strand, within Ac3H11_153 at 37.829 kb on + strand, within Ac3H11_153 at 37.830 kb on - strand, within Ac3H11_153 at 37.830 kb on - strand, within Ac3H11_153 at 37.830 kb on - strand, within Ac3H11_153 at 37.830 kb on - strand, within Ac3H11_153 at 37.830 kb on - strand, within Ac3H11_153 at 38.136 kb on - strand, within Ac3H11_153 at 38.136 kb on - strand, within Ac3H11_153 at 38.165 kb on + strand, within Ac3H11_153 at 38.231 kb on + strand, within Ac3H11_153 at 38.232 kb on - strand, within Ac3H11_153 at 38.232 kb on - strand, within Ac3H11_153 at 38.232 kb on - strand, within Ac3H11_153 at 38.232 kb on - strand, within Ac3H11_153 at 38.400 kb on - strand, within Ac3H11_153 at 38.501 kb on + strand, within Ac3H11_153 at 38.691 kb on - strand, within Ac3H11_153 at 38.919 kb on - strand, within Ac3H11_153 at 38.919 kb on - strand, within Ac3H11_153 at 39.105 kb on - strand, within Ac3H11_153 at 39.414 kb on - strand, within Ac3H11_153 at 39.414 kb on - strand, within Ac3H11_153 at 39.480 kb on - strand, within Ac3H11_153 at 39.480 kb on - strand, within Ac3H11_153 at 39.542 kb on + strand, within Ac3H11_153 at 39.894 kb on - strand, within Ac3H11_153 at 39.894 kb on - strand, within Ac3H11_153 at 39.894 kb on - strand, within Ac3H11_153 at 40.173 kb on - strand, within Ac3H11_153 at 40.192 kb on + strand at 40.193 kb on - strand at 40.193 kb on - strand at 40.193 kb on - strand at 40.193 kb on - strand at 40.193 kb on - strand at 40.573 kb on - strand at 40.573 kb on - strand at 40.656 kb on + strand at 40.656 kb on + strand at 40.656 kb on + strand at 40.668 kb on + strand at 40.669 kb on - strand at 40.968 kb on + strand, within Ac3H11_154 at 40.969 kb on - strand, within Ac3H11_154 at 40.969 kb on - strand, within Ac3H11_154 at 41.133 kb on + strand, within Ac3H11_154 at 41.133 kb on + strand, within Ac3H11_154 at 41.134 kb on - strand, within Ac3H11_154 at 41.220 kb on + strand, within Ac3H11_154 at 41.220 kb on + strand, within Ac3H11_154 at 41.221 kb on - strand, within Ac3H11_154
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 36,205 + Ac3H11_151 0.73 -0.1 36,444 + Ac3H11_151 0.89 -0.6 36,444 + Ac3H11_151 0.89 +0.2 36,650 - +0.5 36,780 - Ac3H11_152 0.88 -1.0 36,791 - -0.3 37,199 + -1.1 37,368 - Ac3H11_153 0.13 -0.2 37,604 + Ac3H11_153 0.19 +1.2 37,604 + Ac3H11_153 0.19 -1.3 37,605 - Ac3H11_153 0.19 +0.8 37,605 - Ac3H11_153 0.19 -0.4 37,605 - Ac3H11_153 0.19 +0.9 37,605 - Ac3H11_153 0.19 +0.0 37,829 + Ac3H11_153 0.25 +0.6 37,830 - Ac3H11_153 0.25 +0.0 37,830 - Ac3H11_153 0.25 +1.7 37,830 - Ac3H11_153 0.25 -0.3 37,830 - Ac3H11_153 0.25 +0.2 37,830 - Ac3H11_153 0.25 -0.2 38,136 - Ac3H11_153 0.34 -0.7 38,136 - Ac3H11_153 0.34 +0.4 38,165 + Ac3H11_153 0.35 +0.9 38,231 + Ac3H11_153 0.36 +1.2 38,232 - Ac3H11_153 0.36 -2.0 38,232 - Ac3H11_153 0.36 +0.1 38,232 - Ac3H11_153 0.36 -1.5 38,232 - Ac3H11_153 0.36 +0.2 38,400 - Ac3H11_153 0.41 +0.1 38,501 + Ac3H11_153 0.44 +0.2 38,691 - Ac3H11_153 0.49 +0.9 38,919 - Ac3H11_153 0.55 +0.5 38,919 - Ac3H11_153 0.55 -0.8 39,105 - Ac3H11_153 0.60 -0.2 39,414 - Ac3H11_153 0.69 -0.8 39,414 - Ac3H11_153 0.69 -0.6 39,480 - Ac3H11_153 0.71 -0.9 39,480 - Ac3H11_153 0.71 -0.3 39,542 + Ac3H11_153 0.72 -0.5 39,894 - Ac3H11_153 0.82 -0.4 39,894 - Ac3H11_153 0.82 +0.3 39,894 - Ac3H11_153 0.82 +0.7 40,173 - Ac3H11_153 0.90 -0.8 40,192 + -1.6 40,193 - -0.4 40,193 - -0.1 40,193 - -0.7 40,193 - +0.6 40,193 - +0.2 40,573 - -0.2 40,573 - +0.4 40,656 + +0.5 40,656 + +0.6 40,656 + -0.1 40,668 + +0.2 40,669 - +0.2 40,968 + Ac3H11_154 0.32 +0.0 40,969 - Ac3H11_154 0.33 -0.7 40,969 - Ac3H11_154 0.33 -2.2 41,133 + Ac3H11_154 0.49 +1.0 41,133 + Ac3H11_154 0.49 +1.5 41,134 - Ac3H11_154 0.50 -0.7 41,220 + Ac3H11_154 0.58 -0.1 41,220 + Ac3H11_154 0.58 +1.0 41,221 - Ac3H11_154 0.59 +1.1
Or see this region's nucleotide sequence