Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS21625

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS21620 and ABZR86_RS21625 are separated by 212 nucleotidesABZR86_RS21625 and ABZR86_RS21630 are separated by 154 nucleotides ABZR86_RS21620: ABZR86_RS21620 - RIP metalloprotease RseP, at 291,810 to 293,156 _RS21620 ABZR86_RS21625: ABZR86_RS21625 - outer membrane protein assembly factor BamA, at 293,369 to 295,810 _RS21625 ABZR86_RS21630: ABZR86_RS21630 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 295,965 to 297,008 _RS21630 Position (kb) 293 294 295 296Strain fitness (log2 ratio) -1 0 1at 292.431 kb on + strand, within ABZR86_RS21620at 293.016 kb on + strand, within ABZR86_RS21620at 293.019 kb on + strand, within ABZR86_RS21620at 293.319 kb on + strandat 293.319 kb on + strandat 293.319 kb on + strandat 293.320 kb on - strandat 293.351 kb on + strandat 293.356 kb on + strandat 295.936 kb on + strandat 295.936 kb on + strandat 295.936 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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292,431 + ABZR86_RS21620 0.46 -0.1
293,016 + ABZR86_RS21620 0.90 -1.1
293,019 + ABZR86_RS21620 0.90 -0.5
293,319 + +0.3
293,319 + -0.2
293,319 + +0.0
293,320 - +0.0
293,351 + -1.2
293,356 + -0.4
295,936 + -0.3
295,936 + -0.6
295,936 + +0.3

Or see this region's nucleotide sequence