Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS17705

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS17695 and ABZR86_RS17700 are separated by 71 nucleotidesABZR86_RS17700 and ABZR86_RS17705 are separated by 23 nucleotidesABZR86_RS17705 and ABZR86_RS17710 are separated by 1 nucleotidesABZR86_RS17710 and ABZR86_RS17715 are separated by 134 nucleotides ABZR86_RS17695: ABZR86_RS17695 - MerR family DNA-binding protein, at 3,992,794 to 3,993,222 _RS17695 ABZR86_RS17700: ABZR86_RS17700 - oxidoreductase, at 3,993,294 to 3,994,127 _RS17700 ABZR86_RS17705: ABZR86_RS17705 - ATP-binding protein, at 3,994,151 to 3,995,203 _RS17705 ABZR86_RS17710: ABZR86_RS17710 - response regulator transcription factor, at 3,995,205 to 3,995,900 _RS17710 ABZR86_RS17715: ABZR86_RS17715 - efflux transporter outer membrane subunit, at 3,996,035 to 3,997,492 _RS17715 Position (kb) 3994 3995 3996Strain fitness (log2 ratio) -2 -1 0 1at 3993.165 kb on - strand, within ABZR86_RS17695at 3993.308 kb on - strandat 3993.372 kb on + strandat 3993.372 kb on + strandat 3993.372 kb on + strandat 3993.373 kb on - strandat 3993.373 kb on - strandat 3993.373 kb on - strandat 3993.381 kb on + strand, within ABZR86_RS17700at 3993.540 kb on + strand, within ABZR86_RS17700at 3993.540 kb on + strand, within ABZR86_RS17700at 3993.550 kb on - strand, within ABZR86_RS17700at 3993.550 kb on - strand, within ABZR86_RS17700at 3993.627 kb on - strand, within ABZR86_RS17700at 3993.727 kb on - strand, within ABZR86_RS17700at 3994.153 kb on - strandat 3994.153 kb on - strandat 3994.808 kb on + strand, within ABZR86_RS17705at 3994.808 kb on + strand, within ABZR86_RS17705at 3994.986 kb on + strand, within ABZR86_RS17705at 3994.987 kb on - strand, within ABZR86_RS17705at 3995.099 kb on - strandat 3995.099 kb on - strandat 3995.113 kb on - strandat 3995.113 kb on - strandat 3995.135 kb on + strandat 3995.224 kb on + strandat 3995.225 kb on - strandat 3995.478 kb on + strand, within ABZR86_RS17710at 3995.478 kb on + strand, within ABZR86_RS17710at 3995.478 kb on + strand, within ABZR86_RS17710at 3995.479 kb on - strand, within ABZR86_RS17710at 3995.479 kb on - strand, within ABZR86_RS17710at 3995.479 kb on - strand, within ABZR86_RS17710at 3995.608 kb on + strand, within ABZR86_RS17710at 3995.608 kb on + strand, within ABZR86_RS17710at 3995.608 kb on + strand, within ABZR86_RS17710at 3995.608 kb on + strand, within ABZR86_RS17710at 3995.609 kb on - strand, within ABZR86_RS17710at 3995.817 kb on + strand, within ABZR86_RS17710at 3995.817 kb on + strand, within ABZR86_RS17710at 3995.817 kb on + strand, within ABZR86_RS17710at 3995.817 kb on + strand, within ABZR86_RS17710at 3995.817 kb on + strand, within ABZR86_RS17710at 3995.817 kb on + strand, within ABZR86_RS17710at 3995.817 kb on + strand, within ABZR86_RS17710at 3995.818 kb on - strand, within ABZR86_RS17710at 3995.818 kb on - strand, within ABZR86_RS17710at 3995.818 kb on - strand, within ABZR86_RS17710at 3995.818 kb on - strand, within ABZR86_RS17710at 3995.818 kb on - strand, within ABZR86_RS17710at 3995.842 kb on + strandat 3995.843 kb on - strandat 3995.910 kb on - strandat 3995.963 kb on + strandat 3995.999 kb on + strandat 3996.000 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
3,993,165 - ABZR86_RS17695 0.86 +0.7
3,993,308 - +0.2
3,993,372 + +0.6
3,993,372 + -0.4
3,993,372 + +0.9
3,993,373 - +0.3
3,993,373 - +0.3
3,993,373 - +0.6
3,993,381 + ABZR86_RS17700 0.10 -0.6
3,993,540 + ABZR86_RS17700 0.29 -0.2
3,993,540 + ABZR86_RS17700 0.29 -0.7
3,993,550 - ABZR86_RS17700 0.31 +0.1
3,993,550 - ABZR86_RS17700 0.31 +0.4
3,993,627 - ABZR86_RS17700 0.40 +1.3
3,993,727 - ABZR86_RS17700 0.52 -0.2
3,994,153 - +0.5
3,994,153 - -2.1
3,994,808 + ABZR86_RS17705 0.62 -0.4
3,994,808 + ABZR86_RS17705 0.62 +0.5
3,994,986 + ABZR86_RS17705 0.79 +0.2
3,994,987 - ABZR86_RS17705 0.79 +0.3
3,995,099 - -0.9
3,995,099 - +0.1
3,995,113 - +0.5
3,995,113 - +0.5
3,995,135 + +1.1
3,995,224 + -0.3
3,995,225 - +0.3
3,995,478 + ABZR86_RS17710 0.39 -0.2
3,995,478 + ABZR86_RS17710 0.39 -0.6
3,995,478 + ABZR86_RS17710 0.39 +0.6
3,995,479 - ABZR86_RS17710 0.39 +0.3
3,995,479 - ABZR86_RS17710 0.39 +0.2
3,995,479 - ABZR86_RS17710 0.39 -0.7
3,995,608 + ABZR86_RS17710 0.58 +0.4
3,995,608 + ABZR86_RS17710 0.58 -0.3
3,995,608 + ABZR86_RS17710 0.58 +0.1
3,995,608 + ABZR86_RS17710 0.58 +0.1
3,995,609 - ABZR86_RS17710 0.58 +0.3
3,995,817 + ABZR86_RS17710 0.88 +1.1
3,995,817 + ABZR86_RS17710 0.88 +0.4
3,995,817 + ABZR86_RS17710 0.88 +0.4
3,995,817 + ABZR86_RS17710 0.88 +0.8
3,995,817 + ABZR86_RS17710 0.88 +1.1
3,995,817 + ABZR86_RS17710 0.88 -1.5
3,995,817 + ABZR86_RS17710 0.88 -0.3
3,995,818 - ABZR86_RS17710 0.88 +1.7
3,995,818 - ABZR86_RS17710 0.88 -1.1
3,995,818 - ABZR86_RS17710 0.88 -0.3
3,995,818 - ABZR86_RS17710 0.88 -0.3
3,995,818 - ABZR86_RS17710 0.88 +0.5
3,995,842 + +0.2
3,995,843 - +0.4
3,995,910 - -0.4
3,995,963 + +0.8
3,995,999 + +0.1
3,996,000 - +0.2

Or see this region's nucleotide sequence