Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS17455

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS17450 and ABZR86_RS17455 are separated by 273 nucleotidesABZR86_RS17455 and ABZR86_RS17460 are separated by 19 nucleotides ABZR86_RS17450: ABZR86_RS17450 - carbohydrate kinase family protein, at 3,941,014 to 3,941,949 _RS17450 ABZR86_RS17455: ABZR86_RS17455 - rod shape-determining protein, at 3,942,223 to 3,943,269 _RS17455 ABZR86_RS17460: ABZR86_RS17460 - rod shape-determining protein MreC, at 3,943,289 to 3,944,272 _RS17460 ABZR86_RS17465: ABZR86_RS17465 - rod shape-determining protein MreD, at 3,944,269 to 3,944,757 _RS17465 Position (kb) 3942 3943 3944Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3941.301 kb on + strand, within ABZR86_RS17450at 3941.303 kb on + strand, within ABZR86_RS17450at 3941.303 kb on + strand, within ABZR86_RS17450at 3941.303 kb on + strand, within ABZR86_RS17450at 3941.303 kb on + strand, within ABZR86_RS17450at 3941.303 kb on + strand, within ABZR86_RS17450at 3941.303 kb on + strand, within ABZR86_RS17450at 3941.303 kb on + strand, within ABZR86_RS17450at 3941.304 kb on - strand, within ABZR86_RS17450at 3941.304 kb on - strand, within ABZR86_RS17450at 3941.304 kb on - strand, within ABZR86_RS17450at 3941.304 kb on - strand, within ABZR86_RS17450at 3941.304 kb on - strand, within ABZR86_RS17450at 3941.304 kb on - strand, within ABZR86_RS17450at 3941.373 kb on - strand, within ABZR86_RS17450at 3941.373 kb on - strand, within ABZR86_RS17450at 3941.388 kb on + strand, within ABZR86_RS17450at 3941.390 kb on + strand, within ABZR86_RS17450at 3941.390 kb on + strand, within ABZR86_RS17450at 3941.390 kb on + strand, within ABZR86_RS17450at 3941.390 kb on + strand, within ABZR86_RS17450at 3941.390 kb on + strand, within ABZR86_RS17450at 3941.391 kb on - strand, within ABZR86_RS17450at 3941.391 kb on - strand, within ABZR86_RS17450at 3941.391 kb on - strand, within ABZR86_RS17450at 3941.391 kb on - strand, within ABZR86_RS17450at 3941.391 kb on - strand, within ABZR86_RS17450at 3941.391 kb on - strand, within ABZR86_RS17450at 3941.681 kb on + strand, within ABZR86_RS17450at 3941.681 kb on + strand, within ABZR86_RS17450at 3941.682 kb on - strand, within ABZR86_RS17450at 3941.709 kb on + strand, within ABZR86_RS17450at 3941.709 kb on + strand, within ABZR86_RS17450at 3941.709 kb on + strand, within ABZR86_RS17450at 3941.710 kb on - strand, within ABZR86_RS17450at 3941.710 kb on - strand, within ABZR86_RS17450at 3941.710 kb on - strand, within ABZR86_RS17450at 3941.710 kb on - strand, within ABZR86_RS17450at 3941.784 kb on + strand, within ABZR86_RS17450at 3941.784 kb on + strand, within ABZR86_RS17450at 3941.785 kb on - strand, within ABZR86_RS17450at 3941.785 kb on - strand, within ABZR86_RS17450at 3941.785 kb on - strand, within ABZR86_RS17450at 3941.786 kb on + strand, within ABZR86_RS17450at 3941.786 kb on + strand, within ABZR86_RS17450at 3941.786 kb on + strand, within ABZR86_RS17450at 3941.787 kb on - strand, within ABZR86_RS17450at 3941.787 kb on - strand, within ABZR86_RS17450at 3941.918 kb on + strandat 3941.918 kb on + strandat 3941.918 kb on + strandat 3941.918 kb on + strandat 3941.918 kb on + strandat 3941.918 kb on + strandat 3941.918 kb on + strandat 3941.919 kb on - strandat 3941.919 kb on - strandat 3941.919 kb on - strandat 3941.919 kb on - strandat 3941.937 kb on + strandat 3941.937 kb on + strandat 3941.956 kb on + strandat 3941.956 kb on + strandat 3941.956 kb on + strandat 3941.956 kb on + strandat 3941.956 kb on + strandat 3941.956 kb on + strandat 3941.956 kb on + strandat 3941.956 kb on + strandat 3941.957 kb on - strandat 3941.957 kb on - strandat 3941.957 kb on - strandat 3941.957 kb on - strandat 3941.957 kb on - strandat 3941.957 kb on - strandat 3941.957 kb on - strandat 3941.971 kb on + strandat 3941.972 kb on - strandat 3942.071 kb on + strandat 3942.071 kb on + strandat 3942.071 kb on + strandat 3942.072 kb on - strandat 3942.072 kb on - strandat 3942.113 kb on + strandat 3942.113 kb on + strandat 3942.113 kb on + strandat 3942.113 kb on + strandat 3942.113 kb on + strandat 3942.114 kb on - strandat 3942.114 kb on - strandat 3942.114 kb on - strandat 3942.114 kb on - strandat 3942.114 kb on - strandat 3942.114 kb on - strandat 3942.126 kb on + strandat 3942.126 kb on + strandat 3942.126 kb on + strandat 3942.126 kb on + strandat 3942.127 kb on - strandat 3942.127 kb on - strandat 3942.127 kb on - strandat 3942.127 kb on - strandat 3942.145 kb on + strandat 3942.146 kb on - strandat 3942.190 kb on + strandat 3943.267 kb on + strandat 3943.267 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,941,301 + ABZR86_RS17450 0.31 +0.6
3,941,303 + ABZR86_RS17450 0.31 -1.2
3,941,303 + ABZR86_RS17450 0.31 -0.5
3,941,303 + ABZR86_RS17450 0.31 -1.4
3,941,303 + ABZR86_RS17450 0.31 -0.4
3,941,303 + ABZR86_RS17450 0.31 +0.7
3,941,303 + ABZR86_RS17450 0.31 -0.5
3,941,303 + ABZR86_RS17450 0.31 -0.0
3,941,304 - ABZR86_RS17450 0.31 -0.8
3,941,304 - ABZR86_RS17450 0.31 -1.1
3,941,304 - ABZR86_RS17450 0.31 -1.2
3,941,304 - ABZR86_RS17450 0.31 -0.5
3,941,304 - ABZR86_RS17450 0.31 -0.7
3,941,304 - ABZR86_RS17450 0.31 -0.8
3,941,373 - ABZR86_RS17450 0.38 +0.1
3,941,373 - ABZR86_RS17450 0.38 -1.4
3,941,388 + ABZR86_RS17450 0.40 -0.6
3,941,390 + ABZR86_RS17450 0.40 -2.2
3,941,390 + ABZR86_RS17450 0.40 -0.3
3,941,390 + ABZR86_RS17450 0.40 -1.6
3,941,390 + ABZR86_RS17450 0.40 -0.5
3,941,390 + ABZR86_RS17450 0.40 +1.5
3,941,391 - ABZR86_RS17450 0.40 -0.1
3,941,391 - ABZR86_RS17450 0.40 -1.2
3,941,391 - ABZR86_RS17450 0.40 -0.2
3,941,391 - ABZR86_RS17450 0.40 -0.9
3,941,391 - ABZR86_RS17450 0.40 -1.1
3,941,391 - ABZR86_RS17450 0.40 -1.1
3,941,681 + ABZR86_RS17450 0.71 -1.6
3,941,681 + ABZR86_RS17450 0.71 -0.8
3,941,682 - ABZR86_RS17450 0.71 -0.2
3,941,709 + ABZR86_RS17450 0.74 -2.4
3,941,709 + ABZR86_RS17450 0.74 -1.1
3,941,709 + ABZR86_RS17450 0.74 -1.2
3,941,710 - ABZR86_RS17450 0.74 -1.5
3,941,710 - ABZR86_RS17450 0.74 +0.4
3,941,710 - ABZR86_RS17450 0.74 -0.2
3,941,710 - ABZR86_RS17450 0.74 -3.1
3,941,784 + ABZR86_RS17450 0.82 +0.1
3,941,784 + ABZR86_RS17450 0.82 -0.4
3,941,785 - ABZR86_RS17450 0.82 +0.1
3,941,785 - ABZR86_RS17450 0.82 -0.1
3,941,785 - ABZR86_RS17450 0.82 -1.9
3,941,786 + ABZR86_RS17450 0.82 -0.4
3,941,786 + ABZR86_RS17450 0.82 -2.1
3,941,786 + ABZR86_RS17450 0.82 -1.0
3,941,787 - ABZR86_RS17450 0.83 +0.1
3,941,787 - ABZR86_RS17450 0.83 -0.6
3,941,918 + -0.6
3,941,918 + -0.2
3,941,918 + -0.3
3,941,918 + -0.3
3,941,918 + +0.3
3,941,918 + -2.1
3,941,918 + +0.5
3,941,919 - -0.4
3,941,919 - -0.3
3,941,919 - +0.6
3,941,919 - -0.4
3,941,937 + -0.6
3,941,937 + -0.5
3,941,956 + -0.4
3,941,956 + -1.1
3,941,956 + -0.7
3,941,956 + +0.8
3,941,956 + +0.5
3,941,956 + -0.7
3,941,956 + -0.6
3,941,956 + +0.1
3,941,957 - +2.1
3,941,957 - -0.7
3,941,957 - -0.2
3,941,957 - -0.8
3,941,957 - -0.0
3,941,957 - -0.5
3,941,957 - +3.3
3,941,971 + -1.9
3,941,972 - +0.4
3,942,071 + -0.8
3,942,071 + -0.4
3,942,071 + +0.1
3,942,072 - -1.4
3,942,072 - -0.4
3,942,113 + -0.0
3,942,113 + +1.1
3,942,113 + -0.8
3,942,113 + +0.1
3,942,113 + +0.4
3,942,114 - +0.6
3,942,114 - +0.1
3,942,114 - +0.1
3,942,114 - +0.5
3,942,114 - -0.5
3,942,114 - -0.5
3,942,126 + -0.2
3,942,126 + +0.2
3,942,126 + +0.2
3,942,126 + -0.7
3,942,127 - -0.1
3,942,127 - +0.7
3,942,127 - +0.4
3,942,127 - -0.2
3,942,145 + +0.2
3,942,146 - -0.0
3,942,190 + -0.0
3,943,267 + -0.6
3,943,267 + -0.5

Or see this region's nucleotide sequence