Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16520

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS16515 and ABZR86_RS16520 are separated by 100 nucleotidesABZR86_RS16520 and ABZR86_RS16525 are separated by 238 nucleotides ABZR86_RS16515: ABZR86_RS16515 - MFS transporter, at 3,731,481 to 3,732,677 _RS16515 ABZR86_RS16520: ABZR86_RS16520 - GFA family protein, at 3,732,778 to 3,733,209 _RS16520 ABZR86_RS16525: ABZR86_RS16525 - alpha/beta fold hydrolase, at 3,733,448 to 3,734,467 _RS16525 Position (kb) 3732 3733 3734Strain fitness (log2 ratio) -2 -1 0 1 2at 3731.947 kb on + strand, within ABZR86_RS16515at 3731.947 kb on + strand, within ABZR86_RS16515at 3731.948 kb on - strand, within ABZR86_RS16515at 3731.950 kb on + strand, within ABZR86_RS16515at 3731.951 kb on - strand, within ABZR86_RS16515at 3732.493 kb on + strand, within ABZR86_RS16515at 3732.493 kb on + strand, within ABZR86_RS16515at 3732.494 kb on - strand, within ABZR86_RS16515at 3732.494 kb on - strand, within ABZR86_RS16515at 3732.504 kb on + strand, within ABZR86_RS16515at 3732.504 kb on + strand, within ABZR86_RS16515at 3732.505 kb on - strand, within ABZR86_RS16515at 3732.505 kb on - strand, within ABZR86_RS16515at 3732.505 kb on - strand, within ABZR86_RS16515at 3732.505 kb on - strand, within ABZR86_RS16515at 3732.592 kb on + strandat 3732.592 kb on + strandat 3732.592 kb on + strandat 3732.756 kb on + strandat 3733.254 kb on + strandat 3733.255 kb on - strandat 3733.255 kb on - strandat 3733.255 kb on - strandat 3733.610 kb on - strand, within ABZR86_RS16525at 3733.689 kb on + strand, within ABZR86_RS16525at 3733.689 kb on + strand, within ABZR86_RS16525at 3733.690 kb on - strand, within ABZR86_RS16525at 3733.846 kb on - strand, within ABZR86_RS16525at 3733.963 kb on - strand, within ABZR86_RS16525at 3733.963 kb on - strand, within ABZR86_RS16525at 3734.070 kb on + strand, within ABZR86_RS16525at 3734.070 kb on + strand, within ABZR86_RS16525

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,731,947 + ABZR86_RS16515 0.39 +1.2
3,731,947 + ABZR86_RS16515 0.39 +0.0
3,731,948 - ABZR86_RS16515 0.39 +1.5
3,731,950 + ABZR86_RS16515 0.39 +0.6
3,731,951 - ABZR86_RS16515 0.39 -0.5
3,732,493 + ABZR86_RS16515 0.85 -0.0
3,732,493 + ABZR86_RS16515 0.85 +0.2
3,732,494 - ABZR86_RS16515 0.85 +0.2
3,732,494 - ABZR86_RS16515 0.85 +0.4
3,732,504 + ABZR86_RS16515 0.85 +0.6
3,732,504 + ABZR86_RS16515 0.85 +0.6
3,732,505 - ABZR86_RS16515 0.86 +0.0
3,732,505 - ABZR86_RS16515 0.86 +0.4
3,732,505 - ABZR86_RS16515 0.86 -0.3
3,732,505 - ABZR86_RS16515 0.86 +0.6
3,732,592 + +0.3
3,732,592 + +1.3
3,732,592 + +0.4
3,732,756 + -0.2
3,733,254 + +0.5
3,733,255 - +0.2
3,733,255 - +1.0
3,733,255 - -0.5
3,733,610 - ABZR86_RS16525 0.16 -0.7
3,733,689 + ABZR86_RS16525 0.24 -0.6
3,733,689 + ABZR86_RS16525 0.24 +0.1
3,733,690 - ABZR86_RS16525 0.24 -0.8
3,733,846 - ABZR86_RS16525 0.39 -1.8
3,733,963 - ABZR86_RS16525 0.50 +2.0
3,733,963 - ABZR86_RS16525 0.50 +0.3
3,734,070 + ABZR86_RS16525 0.61 -1.5
3,734,070 + ABZR86_RS16525 0.61 -0.3

Or see this region's nucleotide sequence