Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS15170

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS15160 and ABZR86_RS15165 are separated by 50 nucleotidesABZR86_RS15165 and ABZR86_RS15170 are separated by 11 nucleotidesABZR86_RS15170 and ABZR86_RS15175 are separated by 5 nucleotidesABZR86_RS15175 and ABZR86_RS15180 are separated by 164 nucleotides ABZR86_RS15160: ABZR86_RS15160 - energy transducer TonB, at 3,413,868 to 3,414,527 _RS15160 ABZR86_RS15165: ABZR86_RS15165 - MotA/TolQ/ExbB proton channel family protein, at 3,414,578 to 3,415,330 _RS15165 ABZR86_RS15170: ABZR86_RS15170 - biopolymer transporter ExbD, at 3,415,342 to 3,415,755 _RS15170 ABZR86_RS15175: ABZR86_RS15175 - biopolymer transporter ExbD, at 3,415,761 to 3,416,168 _RS15175 ABZR86_RS15180: ABZR86_RS15180 - pyridoxine 5'-phosphate synthase, at 3,416,333 to 3,417,082 _RS15180 Position (kb) 3415 3416Strain fitness (log2 ratio) -1 0 1at 3414.486 kb on + strandat 3414.525 kb on + strandat 3414.526 kb on - strandat 3414.577 kb on + strandat 3414.577 kb on + strandat 3415.753 kb on + strandat 3415.753 kb on + strandat 3416.091 kb on + strand, within ABZR86_RS15175at 3416.153 kb on + strandat 3416.195 kb on - strandat 3416.268 kb on + strandat 3416.268 kb on + strandat 3416.268 kb on + strandat 3416.269 kb on - strandat 3416.269 kb on - strandat 3416.270 kb on + strandat 3416.271 kb on - strandat 3416.271 kb on - strandat 3416.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,414,486 + -0.1
3,414,525 + +0.5
3,414,526 - +0.3
3,414,577 + +1.1
3,414,577 + +1.3
3,415,753 + +0.6
3,415,753 + +0.1
3,416,091 + ABZR86_RS15175 0.81 -0.3
3,416,153 + -0.6
3,416,195 - +0.2
3,416,268 + -0.7
3,416,268 + -0.1
3,416,268 + -0.2
3,416,269 - +0.1
3,416,269 - +0.2
3,416,270 + -0.5
3,416,271 - +0.7
3,416,271 - -0.6
3,416,271 - +1.5

Or see this region's nucleotide sequence