Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS12660

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS12655 and ABZR86_RS12660 are separated by 249 nucleotidesABZR86_RS12660 and ABZR86_RS12665 are separated by 44 nucleotidesABZR86_RS12665 and ABZR86_RS12670 are separated by 271 nucleotides ABZR86_RS12655: ABZR86_RS12655 - sensor histidine kinase, at 2,838,350 to 2,839,684 _RS12655 ABZR86_RS12660: ABZR86_RS12660 - glutamate--cysteine ligase, at 2,839,934 to 2,841,301 _RS12660 ABZR86_RS12665: ABZR86_RS12665 - DoxX family protein, at 2,841,346 to 2,841,807 _RS12665 ABZR86_RS12670: ABZR86_RS12670 - hypothetical protein, at 2,842,079 to 2,842,363 _RS12670 Position (kb) 2839 2840 2841 2842Strain fitness (log2 ratio) -2 -1 0 1at 2839.379 kb on - strand, within ABZR86_RS12655at 2839.503 kb on - strand, within ABZR86_RS12655at 2839.682 kb on + strandat 2839.682 kb on + strandat 2839.683 kb on - strandat 2839.683 kb on - strandat 2839.683 kb on - strandat 2839.683 kb on - strandat 2839.683 kb on - strandat 2839.683 kb on - strandat 2839.683 kb on - strandat 2839.793 kb on - strandat 2839.886 kb on + strandat 2839.886 kb on + strandat 2841.297 kb on - strandat 2841.443 kb on + strand, within ABZR86_RS12665at 2841.443 kb on + strand, within ABZR86_RS12665at 2841.443 kb on + strand, within ABZR86_RS12665at 2841.444 kb on - strand, within ABZR86_RS12665at 2841.444 kb on - strand, within ABZR86_RS12665at 2841.444 kb on - strand, within ABZR86_RS12665at 2841.444 kb on - strand, within ABZR86_RS12665at 2841.444 kb on - strand, within ABZR86_RS12665at 2841.468 kb on - strand, within ABZR86_RS12665at 2841.468 kb on - strand, within ABZR86_RS12665at 2841.468 kb on - strand, within ABZR86_RS12665at 2841.468 kb on - strand, within ABZR86_RS12665at 2841.636 kb on + strand, within ABZR86_RS12665at 2841.710 kb on + strand, within ABZR86_RS12665at 2841.710 kb on + strand, within ABZR86_RS12665at 2842.074 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,839,379 - ABZR86_RS12655 0.77 +0.1
2,839,503 - ABZR86_RS12655 0.86 -0.8
2,839,682 + -0.3
2,839,682 + -0.1
2,839,683 - -2.1
2,839,683 - -0.8
2,839,683 - -0.0
2,839,683 - -1.3
2,839,683 - +0.4
2,839,683 - -1.0
2,839,683 - -0.4
2,839,793 - -1.3
2,839,886 + -0.6
2,839,886 + +0.1
2,841,297 - -0.1
2,841,443 + ABZR86_RS12665 0.21 +0.5
2,841,443 + ABZR86_RS12665 0.21 -0.8
2,841,443 + ABZR86_RS12665 0.21 -0.1
2,841,444 - ABZR86_RS12665 0.21 -0.6
2,841,444 - ABZR86_RS12665 0.21 -0.2
2,841,444 - ABZR86_RS12665 0.21 -2.3
2,841,444 - ABZR86_RS12665 0.21 +0.1
2,841,444 - ABZR86_RS12665 0.21 +0.0
2,841,468 - ABZR86_RS12665 0.26 -0.5
2,841,468 - ABZR86_RS12665 0.26 +0.3
2,841,468 - ABZR86_RS12665 0.26 +0.2
2,841,468 - ABZR86_RS12665 0.26 +0.3
2,841,636 + ABZR86_RS12665 0.63 -0.2
2,841,710 + ABZR86_RS12665 0.79 -0.1
2,841,710 + ABZR86_RS12665 0.79 -0.2
2,842,074 + -0.5

Or see this region's nucleotide sequence