Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10115

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10110 and ABZR86_RS10115 are separated by 226 nucleotidesABZR86_RS10115 and ABZR86_RS10120 are separated by 126 nucleotides ABZR86_RS10110: ABZR86_RS10110 - ATP-binding protein, at 2,244,831 to 2,246,117 _RS10110 ABZR86_RS10115: ABZR86_RS10115 - response regulator transcription factor, at 2,246,344 to 2,246,907 _RS10115 ABZR86_RS10120: ABZR86_RS10120 - TonB-dependent receptor, at 2,247,034 to 2,249,283 _RS10120 Position (kb) 2246 2247Strain fitness (log2 ratio) -1 0 1at 2246.098 kb on + strandat 2246.098 kb on + strandat 2246.098 kb on + strandat 2246.099 kb on - strandat 2246.099 kb on - strandat 2246.099 kb on - strandat 2246.099 kb on - strandat 2246.099 kb on - strandat 2246.119 kb on + strandat 2246.119 kb on + strandat 2246.120 kb on - strandat 2246.128 kb on + strandat 2246.920 kb on + strandat 2246.920 kb on + strandat 2246.920 kb on + strandat 2246.920 kb on + strandat 2246.920 kb on + strandat 2246.920 kb on + strandat 2246.920 kb on + strandat 2246.921 kb on - strandat 2246.921 kb on - strandat 2246.921 kb on - strandat 2247.245 kb on - strandat 2247.245 kb on - strandat 2247.274 kb on + strand, within ABZR86_RS10120at 2247.346 kb on + strand, within ABZR86_RS10120at 2247.347 kb on - strand, within ABZR86_RS10120at 2247.347 kb on - strand, within ABZR86_RS10120at 2247.347 kb on - strand, within ABZR86_RS10120at 2247.347 kb on - strand, within ABZR86_RS10120at 2247.451 kb on + strand, within ABZR86_RS10120at 2247.451 kb on + strand, within ABZR86_RS10120at 2247.451 kb on + strand, within ABZR86_RS10120at 2247.451 kb on + strand, within ABZR86_RS10120at 2247.452 kb on - strand, within ABZR86_RS10120at 2247.452 kb on - strand, within ABZR86_RS10120at 2247.452 kb on - strand, within ABZR86_RS10120at 2247.452 kb on - strand, within ABZR86_RS10120at 2247.452 kb on - strand, within ABZR86_RS10120at 2247.460 kb on + strand, within ABZR86_RS10120at 2247.461 kb on - strand, within ABZR86_RS10120at 2247.472 kb on + strand, within ABZR86_RS10120at 2247.511 kb on - strand, within ABZR86_RS10120at 2247.511 kb on - strand, within ABZR86_RS10120at 2247.534 kb on - strand, within ABZR86_RS10120at 2247.534 kb on - strand, within ABZR86_RS10120at 2247.534 kb on - strand, within ABZR86_RS10120at 2247.580 kb on + strand, within ABZR86_RS10120at 2247.581 kb on - strand, within ABZR86_RS10120at 2247.581 kb on - strand, within ABZR86_RS10120at 2247.598 kb on + strand, within ABZR86_RS10120at 2247.598 kb on + strand, within ABZR86_RS10120at 2247.701 kb on - strand, within ABZR86_RS10120at 2247.701 kb on - strand, within ABZR86_RS10120at 2247.796 kb on + strand, within ABZR86_RS10120at 2247.797 kb on - strand, within ABZR86_RS10120at 2247.896 kb on - strand, within ABZR86_RS10120

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,246,098 + +0.4
2,246,098 + -0.8
2,246,098 + +0.0
2,246,099 - -0.5
2,246,099 - -0.4
2,246,099 - +0.0
2,246,099 - +1.6
2,246,099 - -0.1
2,246,119 + +0.3
2,246,119 + -0.1
2,246,120 - -0.3
2,246,128 + -0.1
2,246,920 + -0.5
2,246,920 + +1.1
2,246,920 + +0.4
2,246,920 + +0.1
2,246,920 + +0.4
2,246,920 + -0.7
2,246,920 + +0.0
2,246,921 - -0.3
2,246,921 - +0.1
2,246,921 - -0.2
2,247,245 - +0.1
2,247,245 - -0.1
2,247,274 + ABZR86_RS10120 0.11 -0.8
2,247,346 + ABZR86_RS10120 0.14 -1.6
2,247,347 - ABZR86_RS10120 0.14 +0.1
2,247,347 - ABZR86_RS10120 0.14 +0.8
2,247,347 - ABZR86_RS10120 0.14 +0.3
2,247,347 - ABZR86_RS10120 0.14 +0.9
2,247,451 + ABZR86_RS10120 0.19 -0.5
2,247,451 + ABZR86_RS10120 0.19 +0.9
2,247,451 + ABZR86_RS10120 0.19 -0.2
2,247,451 + ABZR86_RS10120 0.19 -0.8
2,247,452 - ABZR86_RS10120 0.19 -1.1
2,247,452 - ABZR86_RS10120 0.19 -0.9
2,247,452 - ABZR86_RS10120 0.19 -0.1
2,247,452 - ABZR86_RS10120 0.19 +0.7
2,247,452 - ABZR86_RS10120 0.19 -0.7
2,247,460 + ABZR86_RS10120 0.19 +0.2
2,247,461 - ABZR86_RS10120 0.19 +0.5
2,247,472 + ABZR86_RS10120 0.19 -0.3
2,247,511 - ABZR86_RS10120 0.21 +0.4
2,247,511 - ABZR86_RS10120 0.21 -0.2
2,247,534 - ABZR86_RS10120 0.22 +0.1
2,247,534 - ABZR86_RS10120 0.22 +0.3
2,247,534 - ABZR86_RS10120 0.22 -0.4
2,247,580 + ABZR86_RS10120 0.24 -0.5
2,247,581 - ABZR86_RS10120 0.24 +0.4
2,247,581 - ABZR86_RS10120 0.24 +1.7
2,247,598 + ABZR86_RS10120 0.25 -0.7
2,247,598 + ABZR86_RS10120 0.25 -0.4
2,247,701 - ABZR86_RS10120 0.30 -0.1
2,247,701 - ABZR86_RS10120 0.30 -0.8
2,247,796 + ABZR86_RS10120 0.34 +0.1
2,247,797 - ABZR86_RS10120 0.34 +0.1
2,247,896 - ABZR86_RS10120 0.38 +0.5

Or see this region's nucleotide sequence