Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09195

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09185 and ABZR86_RS09190 are separated by 5 nucleotidesABZR86_RS09190 and ABZR86_RS09195 overlap by 4 nucleotidesABZR86_RS09195 and ABZR86_RS09200 are separated by 33 nucleotidesABZR86_RS09200 and ABZR86_RS09205 are separated by 37 nucleotides ABZR86_RS09185: ABZR86_RS09185 - GspH/FimT family pseudopilin, at 2,042,891 to 2,043,481 _RS09185 ABZR86_RS09190: ABZR86_RS09190 - type IV pilin protein, at 2,043,487 to 2,043,918 _RS09190 ABZR86_RS09195: ABZR86_RS09195 - PilC/PilY family type IV pilus protein, at 2,043,915 to 2,048,165 _RS09195 ABZR86_RS09200: ABZR86_RS09200 - PilX N-terminal domain-containing pilus assembly protein, at 2,048,199 to 2,048,864 _RS09200 ABZR86_RS09205: ABZR86_RS09205 - PilW family protein, at 2,048,902 to 2,050,296 _RS09205 Position (kb) 2043 2044 2045 2046 2047 2048 2049Strain fitness (log2 ratio) -1 0 1 2at 2043.171 kb on + strand, within ABZR86_RS09185at 2043.171 kb on + strand, within ABZR86_RS09185at 2043.205 kb on - strand, within ABZR86_RS09185at 2043.209 kb on - strand, within ABZR86_RS09185at 2043.210 kb on + strand, within ABZR86_RS09185at 2043.210 kb on + strand, within ABZR86_RS09185at 2043.211 kb on - strand, within ABZR86_RS09185at 2043.211 kb on - strand, within ABZR86_RS09185at 2043.322 kb on - strand, within ABZR86_RS09185at 2043.650 kb on + strand, within ABZR86_RS09190at 2043.650 kb on + strand, within ABZR86_RS09190at 2043.650 kb on + strand, within ABZR86_RS09190at 2043.651 kb on - strand, within ABZR86_RS09190at 2043.651 kb on - strand, within ABZR86_RS09190at 2043.651 kb on - strand, within ABZR86_RS09190at 2043.651 kb on - strand, within ABZR86_RS09190at 2043.651 kb on - strand, within ABZR86_RS09190at 2043.651 kb on - strand, within ABZR86_RS09190at 2043.651 kb on - strand, within ABZR86_RS09190at 2043.653 kb on + strand, within ABZR86_RS09190at 2043.654 kb on - strand, within ABZR86_RS09190at 2043.714 kb on + strand, within ABZR86_RS09190at 2043.726 kb on - strand, within ABZR86_RS09190at 2043.807 kb on - strand, within ABZR86_RS09190at 2043.923 kb on + strandat 2043.924 kb on - strandat 2044.318 kb on + strandat 2044.318 kb on + strandat 2044.460 kb on - strand, within ABZR86_RS09195at 2044.510 kb on + strand, within ABZR86_RS09195at 2044.511 kb on - strand, within ABZR86_RS09195at 2044.511 kb on - strand, within ABZR86_RS09195at 2044.660 kb on + strand, within ABZR86_RS09195at 2044.661 kb on - strand, within ABZR86_RS09195at 2044.724 kb on - strand, within ABZR86_RS09195at 2044.979 kb on - strand, within ABZR86_RS09195at 2044.979 kb on - strand, within ABZR86_RS09195at 2045.122 kb on + strand, within ABZR86_RS09195at 2045.123 kb on - strand, within ABZR86_RS09195at 2045.123 kb on - strand, within ABZR86_RS09195at 2045.165 kb on + strand, within ABZR86_RS09195at 2045.166 kb on - strand, within ABZR86_RS09195at 2045.198 kb on + strand, within ABZR86_RS09195at 2045.198 kb on + strand, within ABZR86_RS09195at 2045.198 kb on + strand, within ABZR86_RS09195at 2045.199 kb on - strand, within ABZR86_RS09195at 2045.215 kb on + strand, within ABZR86_RS09195at 2045.216 kb on - strand, within ABZR86_RS09195at 2045.216 kb on - strand, within ABZR86_RS09195at 2045.318 kb on - strand, within ABZR86_RS09195at 2045.425 kb on + strand, within ABZR86_RS09195at 2045.426 kb on - strand, within ABZR86_RS09195at 2045.426 kb on - strand, within ABZR86_RS09195at 2045.475 kb on - strand, within ABZR86_RS09195at 2045.484 kb on - strand, within ABZR86_RS09195at 2045.582 kb on - strand, within ABZR86_RS09195at 2045.590 kb on + strand, within ABZR86_RS09195at 2045.590 kb on + strand, within ABZR86_RS09195at 2045.590 kb on + strand, within ABZR86_RS09195at 2045.590 kb on + strand, within ABZR86_RS09195at 2045.590 kb on + strand, within ABZR86_RS09195at 2045.591 kb on - strand, within ABZR86_RS09195at 2045.940 kb on - strand, within ABZR86_RS09195at 2045.940 kb on - strand, within ABZR86_RS09195at 2045.962 kb on + strand, within ABZR86_RS09195at 2046.107 kb on - strand, within ABZR86_RS09195at 2046.307 kb on + strand, within ABZR86_RS09195at 2046.307 kb on + strand, within ABZR86_RS09195at 2046.307 kb on + strand, within ABZR86_RS09195at 2046.308 kb on - strand, within ABZR86_RS09195at 2046.308 kb on - strand, within ABZR86_RS09195at 2046.356 kb on - strand, within ABZR86_RS09195at 2046.356 kb on - strand, within ABZR86_RS09195at 2046.415 kb on + strand, within ABZR86_RS09195at 2046.415 kb on + strand, within ABZR86_RS09195at 2046.415 kb on + strand, within ABZR86_RS09195at 2046.416 kb on - strand, within ABZR86_RS09195at 2046.416 kb on - strand, within ABZR86_RS09195at 2046.478 kb on + strand, within ABZR86_RS09195at 2046.512 kb on - strand, within ABZR86_RS09195at 2046.512 kb on - strand, within ABZR86_RS09195at 2046.566 kb on - strand, within ABZR86_RS09195at 2046.566 kb on - strand, within ABZR86_RS09195at 2046.731 kb on - strand, within ABZR86_RS09195at 2046.821 kb on + strand, within ABZR86_RS09195at 2047.014 kb on - strand, within ABZR86_RS09195at 2047.015 kb on + strand, within ABZR86_RS09195at 2047.132 kb on + strand, within ABZR86_RS09195at 2047.133 kb on - strand, within ABZR86_RS09195at 2047.133 kb on - strand, within ABZR86_RS09195at 2047.135 kb on + strand, within ABZR86_RS09195at 2047.142 kb on - strand, within ABZR86_RS09195at 2047.237 kb on + strand, within ABZR86_RS09195at 2047.237 kb on + strand, within ABZR86_RS09195at 2047.273 kb on + strand, within ABZR86_RS09195at 2047.273 kb on + strand, within ABZR86_RS09195at 2047.273 kb on + strand, within ABZR86_RS09195at 2047.274 kb on - strand, within ABZR86_RS09195at 2047.274 kb on - strand, within ABZR86_RS09195at 2047.318 kb on + strand, within ABZR86_RS09195at 2047.319 kb on - strand, within ABZR86_RS09195at 2047.319 kb on - strand, within ABZR86_RS09195at 2047.321 kb on + strand, within ABZR86_RS09195at 2047.321 kb on + strand, within ABZR86_RS09195at 2047.322 kb on - strand, within ABZR86_RS09195at 2047.369 kb on + strand, within ABZR86_RS09195at 2047.369 kb on + strand, within ABZR86_RS09195at 2047.614 kb on - strand, within ABZR86_RS09195at 2047.621 kb on + strand, within ABZR86_RS09195at 2047.724 kb on + strand, within ABZR86_RS09195at 2047.724 kb on + strand, within ABZR86_RS09195at 2047.724 kb on + strand, within ABZR86_RS09195at 2047.725 kb on - strand, within ABZR86_RS09195at 2047.725 kb on - strand, within ABZR86_RS09195at 2047.725 kb on - strand, within ABZR86_RS09195at 2047.751 kb on - strandat 2047.768 kb on + strandat 2047.768 kb on + strandat 2047.769 kb on - strandat 2047.769 kb on - strandat 2047.771 kb on + strandat 2047.771 kb on + strandat 2047.771 kb on + strandat 2047.771 kb on + strandat 2047.772 kb on - strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.894 kb on + strandat 2047.895 kb on - strandat 2047.895 kb on - strandat 2047.895 kb on - strandat 2047.937 kb on + strandat 2047.938 kb on - strandat 2048.159 kb on + strandat 2048.160 kb on - strandat 2048.186 kb on - strandat 2048.281 kb on + strand, within ABZR86_RS09200at 2048.395 kb on + strand, within ABZR86_RS09200at 2048.396 kb on - strand, within ABZR86_RS09200at 2048.476 kb on + strand, within ABZR86_RS09200at 2048.477 kb on - strand, within ABZR86_RS09200at 2048.546 kb on - strand, within ABZR86_RS09200at 2048.556 kb on - strand, within ABZR86_RS09200at 2048.857 kb on + strandat 2048.857 kb on + strandat 2048.857 kb on + strandat 2048.858 kb on - strandat 2048.858 kb on - strandat 2048.878 kb on + strandat 2048.878 kb on + strandat 2049.035 kb on + strandat 2049.035 kb on + strandat 2049.035 kb on + strandat 2049.035 kb on + strandat 2049.035 kb on + strandat 2049.036 kb on - strandat 2049.036 kb on - strandat 2049.041 kb on + strandat 2049.041 kb on + strandat 2049.041 kb on + strandat 2049.041 kb on + strandat 2049.068 kb on + strand, within ABZR86_RS09205at 2049.068 kb on + strand, within ABZR86_RS09205at 2049.069 kb on - strand, within ABZR86_RS09205at 2049.069 kb on - strand, within ABZR86_RS09205

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,043,171 + ABZR86_RS09185 0.47 -0.9
2,043,171 + ABZR86_RS09185 0.47 +0.6
2,043,205 - ABZR86_RS09185 0.53 +0.5
2,043,209 - ABZR86_RS09185 0.54 -0.3
2,043,210 + ABZR86_RS09185 0.54 +0.1
2,043,210 + ABZR86_RS09185 0.54 -0.1
2,043,211 - ABZR86_RS09185 0.54 +0.2
2,043,211 - ABZR86_RS09185 0.54 -0.1
2,043,322 - ABZR86_RS09185 0.73 +0.5
2,043,650 + ABZR86_RS09190 0.38 +0.6
2,043,650 + ABZR86_RS09190 0.38 +0.9
2,043,650 + ABZR86_RS09190 0.38 +0.3
2,043,651 - ABZR86_RS09190 0.38 +0.1
2,043,651 - ABZR86_RS09190 0.38 +0.2
2,043,651 - ABZR86_RS09190 0.38 -1.7
2,043,651 - ABZR86_RS09190 0.38 -0.3
2,043,651 - ABZR86_RS09190 0.38 -0.4
2,043,651 - ABZR86_RS09190 0.38 +0.9
2,043,651 - ABZR86_RS09190 0.38 +1.0
2,043,653 + ABZR86_RS09190 0.38 -0.2
2,043,654 - ABZR86_RS09190 0.39 +0.7
2,043,714 + ABZR86_RS09190 0.53 -0.2
2,043,726 - ABZR86_RS09190 0.55 +0.2
2,043,807 - ABZR86_RS09190 0.74 -0.1
2,043,923 + -0.1
2,043,924 - -0.1
2,044,318 + +0.3
2,044,318 + +0.3
2,044,460 - ABZR86_RS09195 0.13 +0.3
2,044,510 + ABZR86_RS09195 0.14 -0.1
2,044,511 - ABZR86_RS09195 0.14 +0.9
2,044,511 - ABZR86_RS09195 0.14 +0.0
2,044,660 + ABZR86_RS09195 0.18 +0.9
2,044,661 - ABZR86_RS09195 0.18 +0.6
2,044,724 - ABZR86_RS09195 0.19 +0.7
2,044,979 - ABZR86_RS09195 0.25 +0.5
2,044,979 - ABZR86_RS09195 0.25 -0.7
2,045,122 + ABZR86_RS09195 0.28 +0.3
2,045,123 - ABZR86_RS09195 0.28 +0.4
2,045,123 - ABZR86_RS09195 0.28 -0.5
2,045,165 + ABZR86_RS09195 0.29 +0.6
2,045,166 - ABZR86_RS09195 0.29 -0.3
2,045,198 + ABZR86_RS09195 0.30 +0.3
2,045,198 + ABZR86_RS09195 0.30 +0.3
2,045,198 + ABZR86_RS09195 0.30 -0.0
2,045,199 - ABZR86_RS09195 0.30 +1.9
2,045,215 + ABZR86_RS09195 0.31 +0.1
2,045,216 - ABZR86_RS09195 0.31 +0.3
2,045,216 - ABZR86_RS09195 0.31 +0.2
2,045,318 - ABZR86_RS09195 0.33 +1.4
2,045,425 + ABZR86_RS09195 0.36 +0.0
2,045,426 - ABZR86_RS09195 0.36 -0.1
2,045,426 - ABZR86_RS09195 0.36 +0.9
2,045,475 - ABZR86_RS09195 0.37 -0.0
2,045,484 - ABZR86_RS09195 0.37 -1.1
2,045,582 - ABZR86_RS09195 0.39 +0.2
2,045,590 + ABZR86_RS09195 0.39 +0.1
2,045,590 + ABZR86_RS09195 0.39 +0.6
2,045,590 + ABZR86_RS09195 0.39 +0.0
2,045,590 + ABZR86_RS09195 0.39 +0.5
2,045,590 + ABZR86_RS09195 0.39 +0.8
2,045,591 - ABZR86_RS09195 0.39 +1.0
2,045,940 - ABZR86_RS09195 0.48 +0.3
2,045,940 - ABZR86_RS09195 0.48 +0.7
2,045,962 + ABZR86_RS09195 0.48 -0.4
2,046,107 - ABZR86_RS09195 0.52 +0.5
2,046,307 + ABZR86_RS09195 0.56 +0.3
2,046,307 + ABZR86_RS09195 0.56 +0.6
2,046,307 + ABZR86_RS09195 0.56 -0.3
2,046,308 - ABZR86_RS09195 0.56 +0.9
2,046,308 - ABZR86_RS09195 0.56 +0.3
2,046,356 - ABZR86_RS09195 0.57 +0.8
2,046,356 - ABZR86_RS09195 0.57 +0.1
2,046,415 + ABZR86_RS09195 0.59 +1.9
2,046,415 + ABZR86_RS09195 0.59 -1.1
2,046,415 + ABZR86_RS09195 0.59 +0.5
2,046,416 - ABZR86_RS09195 0.59 +0.4
2,046,416 - ABZR86_RS09195 0.59 +0.4
2,046,478 + ABZR86_RS09195 0.60 +1.5
2,046,512 - ABZR86_RS09195 0.61 +0.5
2,046,512 - ABZR86_RS09195 0.61 +0.3
2,046,566 - ABZR86_RS09195 0.62 -0.0
2,046,566 - ABZR86_RS09195 0.62 -0.2
2,046,731 - ABZR86_RS09195 0.66 +0.5
2,046,821 + ABZR86_RS09195 0.68 -1.1
2,047,014 - ABZR86_RS09195 0.73 -0.1
2,047,015 + ABZR86_RS09195 0.73 +0.3
2,047,132 + ABZR86_RS09195 0.76 +0.7
2,047,133 - ABZR86_RS09195 0.76 +1.7
2,047,133 - ABZR86_RS09195 0.76 +1.0
2,047,135 + ABZR86_RS09195 0.76 -0.1
2,047,142 - ABZR86_RS09195 0.76 -0.1
2,047,237 + ABZR86_RS09195 0.78 -0.9
2,047,237 + ABZR86_RS09195 0.78 +0.6
2,047,273 + ABZR86_RS09195 0.79 +0.1
2,047,273 + ABZR86_RS09195 0.79 -0.9
2,047,273 + ABZR86_RS09195 0.79 +0.9
2,047,274 - ABZR86_RS09195 0.79 +0.3
2,047,274 - ABZR86_RS09195 0.79 +0.4
2,047,318 + ABZR86_RS09195 0.80 +0.2
2,047,319 - ABZR86_RS09195 0.80 -0.1
2,047,319 - ABZR86_RS09195 0.80 +1.2
2,047,321 + ABZR86_RS09195 0.80 -0.1
2,047,321 + ABZR86_RS09195 0.80 +0.3
2,047,322 - ABZR86_RS09195 0.80 -0.9
2,047,369 + ABZR86_RS09195 0.81 -0.0
2,047,369 + ABZR86_RS09195 0.81 +1.5
2,047,614 - ABZR86_RS09195 0.87 -0.1
2,047,621 + ABZR86_RS09195 0.87 +0.7
2,047,724 + ABZR86_RS09195 0.90 -0.2
2,047,724 + ABZR86_RS09195 0.90 -0.9
2,047,724 + ABZR86_RS09195 0.90 -0.1
2,047,725 - ABZR86_RS09195 0.90 +0.6
2,047,725 - ABZR86_RS09195 0.90 -0.4
2,047,725 - ABZR86_RS09195 0.90 -0.5
2,047,751 - +0.6
2,047,768 + +0.4
2,047,768 + -0.4
2,047,769 - +1.0
2,047,769 - +0.3
2,047,771 + -0.1
2,047,771 + +0.6
2,047,771 + +0.4
2,047,771 + +0.3
2,047,772 - +0.3
2,047,894 + +0.3
2,047,894 + +0.5
2,047,894 + -0.8
2,047,894 + +0.1
2,047,894 + -1.4
2,047,894 + +1.2
2,047,894 + -0.4
2,047,894 + -0.4
2,047,895 - +0.1
2,047,895 - +1.1
2,047,895 - +0.3
2,047,937 + -0.7
2,047,938 - +1.0
2,048,159 + +0.6
2,048,160 - +0.3
2,048,186 - +0.9
2,048,281 + ABZR86_RS09200 0.12 +1.4
2,048,395 + ABZR86_RS09200 0.29 +0.5
2,048,396 - ABZR86_RS09200 0.30 +0.2
2,048,476 + ABZR86_RS09200 0.42 +1.0
2,048,477 - ABZR86_RS09200 0.42 +0.3
2,048,546 - ABZR86_RS09200 0.52 -0.1
2,048,556 - ABZR86_RS09200 0.54 +0.3
2,048,857 + -0.4
2,048,857 + +0.2
2,048,857 + +1.8
2,048,858 - -0.6
2,048,858 - +0.9
2,048,878 + -0.2
2,048,878 + +0.4
2,049,035 + -1.2
2,049,035 + -0.5
2,049,035 + +1.2
2,049,035 + +0.4
2,049,035 + +0.1
2,049,036 - -0.2
2,049,036 - -0.5
2,049,041 + -0.4
2,049,041 + -1.1
2,049,041 + -0.1
2,049,041 + +0.2
2,049,068 + ABZR86_RS09205 0.12 -0.2
2,049,068 + ABZR86_RS09205 0.12 -0.1
2,049,069 - ABZR86_RS09205 0.12 +0.2
2,049,069 - ABZR86_RS09205 0.12 -1.4

Or see this region's nucleotide sequence