Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS09185 and ABZR86_RS09190 are separated by 5 nucleotides ABZR86_RS09190 and ABZR86_RS09195 overlap by 4 nucleotides ABZR86_RS09195 and ABZR86_RS09200 are separated by 33 nucleotides ABZR86_RS09200 and ABZR86_RS09205 are separated by 37 nucleotides
ABZR86_RS09185: ABZR86_RS09185 - GspH/FimT family pseudopilin, at 2,042,891 to 2,043,481
_RS09185
ABZR86_RS09190: ABZR86_RS09190 - type IV pilin protein, at 2,043,487 to 2,043,918
_RS09190
ABZR86_RS09195: ABZR86_RS09195 - PilC/PilY family type IV pilus protein, at 2,043,915 to 2,048,165
_RS09195
ABZR86_RS09200: ABZR86_RS09200 - PilX N-terminal domain-containing pilus assembly protein, at 2,048,199 to 2,048,864
_RS09200
ABZR86_RS09205: ABZR86_RS09205 - PilW family protein, at 2,048,902 to 2,050,296
_RS09205
Position (kb)
2043
2044
2045
2046
2047
2048
2049 Strain fitness (log2 ratio)
-1
0
1
2 at 2043.171 kb on + strand, within ABZR86_RS09185 at 2043.171 kb on + strand, within ABZR86_RS09185 at 2043.205 kb on - strand, within ABZR86_RS09185 at 2043.209 kb on - strand, within ABZR86_RS09185 at 2043.210 kb on + strand, within ABZR86_RS09185 at 2043.210 kb on + strand, within ABZR86_RS09185 at 2043.211 kb on - strand, within ABZR86_RS09185 at 2043.211 kb on - strand, within ABZR86_RS09185 at 2043.322 kb on - strand, within ABZR86_RS09185 at 2043.650 kb on + strand, within ABZR86_RS09190 at 2043.650 kb on + strand, within ABZR86_RS09190 at 2043.650 kb on + strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.651 kb on - strand, within ABZR86_RS09190 at 2043.653 kb on + strand, within ABZR86_RS09190 at 2043.654 kb on - strand, within ABZR86_RS09190 at 2043.714 kb on + strand, within ABZR86_RS09190 at 2043.726 kb on - strand, within ABZR86_RS09190 at 2043.807 kb on - strand, within ABZR86_RS09190 at 2043.923 kb on + strand at 2043.924 kb on - strand at 2044.318 kb on + strand at 2044.318 kb on + strand at 2044.460 kb on - strand, within ABZR86_RS09195 at 2044.510 kb on + strand, within ABZR86_RS09195 at 2044.511 kb on - strand, within ABZR86_RS09195 at 2044.511 kb on - strand, within ABZR86_RS09195 at 2044.660 kb on + strand, within ABZR86_RS09195 at 2044.661 kb on - strand, within ABZR86_RS09195 at 2044.724 kb on - strand, within ABZR86_RS09195 at 2044.979 kb on - strand, within ABZR86_RS09195 at 2044.979 kb on - strand, within ABZR86_RS09195 at 2045.122 kb on + strand, within ABZR86_RS09195 at 2045.123 kb on - strand, within ABZR86_RS09195 at 2045.123 kb on - strand, within ABZR86_RS09195 at 2045.165 kb on + strand, within ABZR86_RS09195 at 2045.166 kb on - strand, within ABZR86_RS09195 at 2045.198 kb on + strand, within ABZR86_RS09195 at 2045.198 kb on + strand, within ABZR86_RS09195 at 2045.198 kb on + strand, within ABZR86_RS09195 at 2045.199 kb on - strand, within ABZR86_RS09195 at 2045.215 kb on + strand, within ABZR86_RS09195 at 2045.216 kb on - strand, within ABZR86_RS09195 at 2045.216 kb on - strand, within ABZR86_RS09195 at 2045.318 kb on - strand, within ABZR86_RS09195 at 2045.425 kb on + strand, within ABZR86_RS09195 at 2045.426 kb on - strand, within ABZR86_RS09195 at 2045.426 kb on - strand, within ABZR86_RS09195 at 2045.475 kb on - strand, within ABZR86_RS09195 at 2045.484 kb on - strand, within ABZR86_RS09195 at 2045.582 kb on - strand, within ABZR86_RS09195 at 2045.590 kb on + strand, within ABZR86_RS09195 at 2045.590 kb on + strand, within ABZR86_RS09195 at 2045.590 kb on + strand, within ABZR86_RS09195 at 2045.590 kb on + strand, within ABZR86_RS09195 at 2045.590 kb on + strand, within ABZR86_RS09195 at 2045.591 kb on - strand, within ABZR86_RS09195 at 2045.940 kb on - strand, within ABZR86_RS09195 at 2045.940 kb on - strand, within ABZR86_RS09195 at 2045.962 kb on + strand, within ABZR86_RS09195 at 2046.107 kb on - strand, within ABZR86_RS09195 at 2046.307 kb on + strand, within ABZR86_RS09195 at 2046.307 kb on + strand, within ABZR86_RS09195 at 2046.307 kb on + strand, within ABZR86_RS09195 at 2046.308 kb on - strand, within ABZR86_RS09195 at 2046.308 kb on - strand, within ABZR86_RS09195 at 2046.356 kb on - strand, within ABZR86_RS09195 at 2046.356 kb on - strand, within ABZR86_RS09195 at 2046.415 kb on + strand, within ABZR86_RS09195 at 2046.415 kb on + strand, within ABZR86_RS09195 at 2046.415 kb on + strand, within ABZR86_RS09195 at 2046.416 kb on - strand, within ABZR86_RS09195 at 2046.416 kb on - strand, within ABZR86_RS09195 at 2046.478 kb on + strand, within ABZR86_RS09195 at 2046.512 kb on - strand, within ABZR86_RS09195 at 2046.512 kb on - strand, within ABZR86_RS09195 at 2046.566 kb on - strand, within ABZR86_RS09195 at 2046.566 kb on - strand, within ABZR86_RS09195 at 2046.731 kb on - strand, within ABZR86_RS09195 at 2046.821 kb on + strand, within ABZR86_RS09195 at 2047.014 kb on - strand, within ABZR86_RS09195 at 2047.015 kb on + strand, within ABZR86_RS09195 at 2047.132 kb on + strand, within ABZR86_RS09195 at 2047.133 kb on - strand, within ABZR86_RS09195 at 2047.133 kb on - strand, within ABZR86_RS09195 at 2047.135 kb on + strand, within ABZR86_RS09195 at 2047.142 kb on - strand, within ABZR86_RS09195 at 2047.237 kb on + strand, within ABZR86_RS09195 at 2047.237 kb on + strand, within ABZR86_RS09195 at 2047.273 kb on + strand, within ABZR86_RS09195 at 2047.273 kb on + strand, within ABZR86_RS09195 at 2047.273 kb on + strand, within ABZR86_RS09195 at 2047.274 kb on - strand, within ABZR86_RS09195 at 2047.274 kb on - strand, within ABZR86_RS09195 at 2047.318 kb on + strand, within ABZR86_RS09195 at 2047.319 kb on - strand, within ABZR86_RS09195 at 2047.319 kb on - strand, within ABZR86_RS09195 at 2047.321 kb on + strand, within ABZR86_RS09195 at 2047.321 kb on + strand, within ABZR86_RS09195 at 2047.322 kb on - strand, within ABZR86_RS09195 at 2047.369 kb on + strand, within ABZR86_RS09195 at 2047.369 kb on + strand, within ABZR86_RS09195 at 2047.614 kb on - strand, within ABZR86_RS09195 at 2047.621 kb on + strand, within ABZR86_RS09195 at 2047.724 kb on + strand, within ABZR86_RS09195 at 2047.724 kb on + strand, within ABZR86_RS09195 at 2047.724 kb on + strand, within ABZR86_RS09195 at 2047.725 kb on - strand, within ABZR86_RS09195 at 2047.725 kb on - strand, within ABZR86_RS09195 at 2047.725 kb on - strand, within ABZR86_RS09195 at 2047.751 kb on - strand at 2047.768 kb on + strand at 2047.768 kb on + strand at 2047.769 kb on - strand at 2047.769 kb on - strand at 2047.771 kb on + strand at 2047.771 kb on + strand at 2047.771 kb on + strand at 2047.771 kb on + strand at 2047.772 kb on - strand at 2047.894 kb on + strand at 2047.894 kb on + strand at 2047.894 kb on + strand at 2047.894 kb on + strand at 2047.894 kb on + strand at 2047.894 kb on + strand at 2047.894 kb on + strand at 2047.894 kb on + strand at 2047.895 kb on - strand at 2047.895 kb on - strand at 2047.895 kb on - strand at 2047.937 kb on + strand at 2047.938 kb on - strand at 2048.159 kb on + strand at 2048.160 kb on - strand at 2048.186 kb on - strand at 2048.281 kb on + strand, within ABZR86_RS09200 at 2048.395 kb on + strand, within ABZR86_RS09200 at 2048.396 kb on - strand, within ABZR86_RS09200 at 2048.476 kb on + strand, within ABZR86_RS09200 at 2048.477 kb on - strand, within ABZR86_RS09200 at 2048.546 kb on - strand, within ABZR86_RS09200 at 2048.556 kb on - strand, within ABZR86_RS09200 at 2048.857 kb on + strand at 2048.857 kb on + strand at 2048.857 kb on + strand at 2048.858 kb on - strand at 2048.858 kb on - strand at 2048.878 kb on + strand at 2048.878 kb on + strand at 2049.035 kb on + strand at 2049.035 kb on + strand at 2049.035 kb on + strand at 2049.035 kb on + strand at 2049.035 kb on + strand at 2049.036 kb on - strand at 2049.036 kb on - strand at 2049.041 kb on + strand at 2049.041 kb on + strand at 2049.041 kb on + strand at 2049.041 kb on + strand at 2049.068 kb on + strand, within ABZR86_RS09205 at 2049.068 kb on + strand, within ABZR86_RS09205 at 2049.069 kb on - strand, within ABZR86_RS09205 at 2049.069 kb on - strand, within ABZR86_RS09205
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,043,171 + ABZR86_RS09185 0.47 -0.9 2,043,171 + ABZR86_RS09185 0.47 +0.6 2,043,205 - ABZR86_RS09185 0.53 +0.5 2,043,209 - ABZR86_RS09185 0.54 -0.3 2,043,210 + ABZR86_RS09185 0.54 +0.1 2,043,210 + ABZR86_RS09185 0.54 -0.1 2,043,211 - ABZR86_RS09185 0.54 +0.2 2,043,211 - ABZR86_RS09185 0.54 -0.1 2,043,322 - ABZR86_RS09185 0.73 +0.5 2,043,650 + ABZR86_RS09190 0.38 +0.6 2,043,650 + ABZR86_RS09190 0.38 +0.9 2,043,650 + ABZR86_RS09190 0.38 +0.3 2,043,651 - ABZR86_RS09190 0.38 +0.1 2,043,651 - ABZR86_RS09190 0.38 +0.2 2,043,651 - ABZR86_RS09190 0.38 -1.7 2,043,651 - ABZR86_RS09190 0.38 -0.3 2,043,651 - ABZR86_RS09190 0.38 -0.4 2,043,651 - ABZR86_RS09190 0.38 +0.9 2,043,651 - ABZR86_RS09190 0.38 +1.0 2,043,653 + ABZR86_RS09190 0.38 -0.2 2,043,654 - ABZR86_RS09190 0.39 +0.7 2,043,714 + ABZR86_RS09190 0.53 -0.2 2,043,726 - ABZR86_RS09190 0.55 +0.2 2,043,807 - ABZR86_RS09190 0.74 -0.1 2,043,923 + -0.1 2,043,924 - -0.1 2,044,318 + +0.3 2,044,318 + +0.3 2,044,460 - ABZR86_RS09195 0.13 +0.3 2,044,510 + ABZR86_RS09195 0.14 -0.1 2,044,511 - ABZR86_RS09195 0.14 +0.9 2,044,511 - ABZR86_RS09195 0.14 +0.0 2,044,660 + ABZR86_RS09195 0.18 +0.9 2,044,661 - ABZR86_RS09195 0.18 +0.6 2,044,724 - ABZR86_RS09195 0.19 +0.7 2,044,979 - ABZR86_RS09195 0.25 +0.5 2,044,979 - ABZR86_RS09195 0.25 -0.7 2,045,122 + ABZR86_RS09195 0.28 +0.3 2,045,123 - ABZR86_RS09195 0.28 +0.4 2,045,123 - ABZR86_RS09195 0.28 -0.5 2,045,165 + ABZR86_RS09195 0.29 +0.6 2,045,166 - ABZR86_RS09195 0.29 -0.3 2,045,198 + ABZR86_RS09195 0.30 +0.3 2,045,198 + ABZR86_RS09195 0.30 +0.3 2,045,198 + ABZR86_RS09195 0.30 -0.0 2,045,199 - ABZR86_RS09195 0.30 +1.9 2,045,215 + ABZR86_RS09195 0.31 +0.1 2,045,216 - ABZR86_RS09195 0.31 +0.3 2,045,216 - ABZR86_RS09195 0.31 +0.2 2,045,318 - ABZR86_RS09195 0.33 +1.4 2,045,425 + ABZR86_RS09195 0.36 +0.0 2,045,426 - ABZR86_RS09195 0.36 -0.1 2,045,426 - ABZR86_RS09195 0.36 +0.9 2,045,475 - ABZR86_RS09195 0.37 -0.0 2,045,484 - ABZR86_RS09195 0.37 -1.1 2,045,582 - ABZR86_RS09195 0.39 +0.2 2,045,590 + ABZR86_RS09195 0.39 +0.1 2,045,590 + ABZR86_RS09195 0.39 +0.6 2,045,590 + ABZR86_RS09195 0.39 +0.0 2,045,590 + ABZR86_RS09195 0.39 +0.5 2,045,590 + ABZR86_RS09195 0.39 +0.8 2,045,591 - ABZR86_RS09195 0.39 +1.0 2,045,940 - ABZR86_RS09195 0.48 +0.3 2,045,940 - ABZR86_RS09195 0.48 +0.7 2,045,962 + ABZR86_RS09195 0.48 -0.4 2,046,107 - ABZR86_RS09195 0.52 +0.5 2,046,307 + ABZR86_RS09195 0.56 +0.3 2,046,307 + ABZR86_RS09195 0.56 +0.6 2,046,307 + ABZR86_RS09195 0.56 -0.3 2,046,308 - ABZR86_RS09195 0.56 +0.9 2,046,308 - ABZR86_RS09195 0.56 +0.3 2,046,356 - ABZR86_RS09195 0.57 +0.8 2,046,356 - ABZR86_RS09195 0.57 +0.1 2,046,415 + ABZR86_RS09195 0.59 +1.9 2,046,415 + ABZR86_RS09195 0.59 -1.1 2,046,415 + ABZR86_RS09195 0.59 +0.5 2,046,416 - ABZR86_RS09195 0.59 +0.4 2,046,416 - ABZR86_RS09195 0.59 +0.4 2,046,478 + ABZR86_RS09195 0.60 +1.5 2,046,512 - ABZR86_RS09195 0.61 +0.5 2,046,512 - ABZR86_RS09195 0.61 +0.3 2,046,566 - ABZR86_RS09195 0.62 -0.0 2,046,566 - ABZR86_RS09195 0.62 -0.2 2,046,731 - ABZR86_RS09195 0.66 +0.5 2,046,821 + ABZR86_RS09195 0.68 -1.1 2,047,014 - ABZR86_RS09195 0.73 -0.1 2,047,015 + ABZR86_RS09195 0.73 +0.3 2,047,132 + ABZR86_RS09195 0.76 +0.7 2,047,133 - ABZR86_RS09195 0.76 +1.7 2,047,133 - ABZR86_RS09195 0.76 +1.0 2,047,135 + ABZR86_RS09195 0.76 -0.1 2,047,142 - ABZR86_RS09195 0.76 -0.1 2,047,237 + ABZR86_RS09195 0.78 -0.9 2,047,237 + ABZR86_RS09195 0.78 +0.6 2,047,273 + ABZR86_RS09195 0.79 +0.1 2,047,273 + ABZR86_RS09195 0.79 -0.9 2,047,273 + ABZR86_RS09195 0.79 +0.9 2,047,274 - ABZR86_RS09195 0.79 +0.3 2,047,274 - ABZR86_RS09195 0.79 +0.4 2,047,318 + ABZR86_RS09195 0.80 +0.2 2,047,319 - ABZR86_RS09195 0.80 -0.1 2,047,319 - ABZR86_RS09195 0.80 +1.2 2,047,321 + ABZR86_RS09195 0.80 -0.1 2,047,321 + ABZR86_RS09195 0.80 +0.3 2,047,322 - ABZR86_RS09195 0.80 -0.9 2,047,369 + ABZR86_RS09195 0.81 -0.0 2,047,369 + ABZR86_RS09195 0.81 +1.5 2,047,614 - ABZR86_RS09195 0.87 -0.1 2,047,621 + ABZR86_RS09195 0.87 +0.7 2,047,724 + ABZR86_RS09195 0.90 -0.2 2,047,724 + ABZR86_RS09195 0.90 -0.9 2,047,724 + ABZR86_RS09195 0.90 -0.1 2,047,725 - ABZR86_RS09195 0.90 +0.6 2,047,725 - ABZR86_RS09195 0.90 -0.4 2,047,725 - ABZR86_RS09195 0.90 -0.5 2,047,751 - +0.6 2,047,768 + +0.4 2,047,768 + -0.4 2,047,769 - +1.0 2,047,769 - +0.3 2,047,771 + -0.1 2,047,771 + +0.6 2,047,771 + +0.4 2,047,771 + +0.3 2,047,772 - +0.3 2,047,894 + +0.3 2,047,894 + +0.5 2,047,894 + -0.8 2,047,894 + +0.1 2,047,894 + -1.4 2,047,894 + +1.2 2,047,894 + -0.4 2,047,894 + -0.4 2,047,895 - +0.1 2,047,895 - +1.1 2,047,895 - +0.3 2,047,937 + -0.7 2,047,938 - +1.0 2,048,159 + +0.6 2,048,160 - +0.3 2,048,186 - +0.9 2,048,281 + ABZR86_RS09200 0.12 +1.4 2,048,395 + ABZR86_RS09200 0.29 +0.5 2,048,396 - ABZR86_RS09200 0.30 +0.2 2,048,476 + ABZR86_RS09200 0.42 +1.0 2,048,477 - ABZR86_RS09200 0.42 +0.3 2,048,546 - ABZR86_RS09200 0.52 -0.1 2,048,556 - ABZR86_RS09200 0.54 +0.3 2,048,857 + -0.4 2,048,857 + +0.2 2,048,857 + +1.8 2,048,858 - -0.6 2,048,858 - +0.9 2,048,878 + -0.2 2,048,878 + +0.4 2,049,035 + -1.2 2,049,035 + -0.5 2,049,035 + +1.2 2,049,035 + +0.4 2,049,035 + +0.1 2,049,036 - -0.2 2,049,036 - -0.5 2,049,041 + -0.4 2,049,041 + -1.1 2,049,041 + -0.1 2,049,041 + +0.2 2,049,068 + ABZR86_RS09205 0.12 -0.2 2,049,068 + ABZR86_RS09205 0.12 -0.1 2,049,069 - ABZR86_RS09205 0.12 +0.2 2,049,069 - ABZR86_RS09205 0.12 -1.4
Or see this region's nucleotide sequence