Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05650

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05645 and ABZR86_RS05650 are separated by 128 nucleotidesABZR86_RS05650 and ABZR86_RS05655 are separated by 145 nucleotidesABZR86_RS05655 and ABZR86_RS05660 are separated by 80 nucleotides ABZR86_RS05645: ABZR86_RS05645 - molecular chaperone DnaJ, at 1,275,424 to 1,276,548 _RS05645 ABZR86_RS05650: ABZR86_RS05650 - molecular chaperone DnaK, at 1,276,677 to 1,278,599 _RS05650 ABZR86_RS05655: ABZR86_RS05655 - nucleotide exchange factor GrpE, at 1,278,745 to 1,279,278 _RS05655 ABZR86_RS05660: ABZR86_RS05660 - heat-inducible transcriptional repressor HrcA, at 1,279,359 to 1,280,420 _RS05660 Position (kb) 1276 1277 1278 1279Strain fitness (log2 ratio) -1 0 1 2 3at 1275.764 kb on + strand, within ABZR86_RS05645at 1275.764 kb on + strand, within ABZR86_RS05645at 1275.765 kb on - strand, within ABZR86_RS05645at 1275.821 kb on + strand, within ABZR86_RS05645at 1275.822 kb on - strand, within ABZR86_RS05645at 1275.822 kb on - strand, within ABZR86_RS05645at 1275.822 kb on - strand, within ABZR86_RS05645at 1275.822 kb on - strand, within ABZR86_RS05645at 1275.822 kb on - strand, within ABZR86_RS05645at 1275.822 kb on - strand, within ABZR86_RS05645at 1276.196 kb on + strand, within ABZR86_RS05645at 1276.196 kb on + strand, within ABZR86_RS05645at 1276.196 kb on + strand, within ABZR86_RS05645at 1276.196 kb on + strand, within ABZR86_RS05645at 1276.197 kb on - strand, within ABZR86_RS05645at 1276.197 kb on - strand, within ABZR86_RS05645at 1276.197 kb on - strand, within ABZR86_RS05645at 1276.197 kb on - strand, within ABZR86_RS05645at 1276.197 kb on - strand, within ABZR86_RS05645at 1276.197 kb on - strand, within ABZR86_RS05645at 1276.197 kb on - strand, within ABZR86_RS05645at 1276.197 kb on - strand, within ABZR86_RS05645at 1276.197 kb on - strand, within ABZR86_RS05645at 1276.275 kb on + strand, within ABZR86_RS05645at 1276.275 kb on + strand, within ABZR86_RS05645at 1276.352 kb on + strand, within ABZR86_RS05645at 1276.352 kb on + strand, within ABZR86_RS05645at 1276.352 kb on + strand, within ABZR86_RS05645at 1276.353 kb on - strand, within ABZR86_RS05645at 1276.353 kb on - strand, within ABZR86_RS05645at 1276.388 kb on + strand, within ABZR86_RS05645at 1276.388 kb on + strand, within ABZR86_RS05645at 1276.389 kb on - strand, within ABZR86_RS05645at 1276.389 kb on - strand, within ABZR86_RS05645at 1276.454 kb on + strandat 1276.454 kb on + strandat 1276.454 kb on + strandat 1276.454 kb on + strandat 1276.455 kb on - strandat 1276.455 kb on - strandat 1276.455 kb on - strandat 1276.455 kb on - strandat 1276.529 kb on + strandat 1276.529 kb on + strandat 1276.529 kb on + strandat 1276.530 kb on - strandat 1276.530 kb on - strandat 1276.533 kb on - strandat 1276.533 kb on - strandat 1276.533 kb on - strandat 1279.360 kb on + strandat 1279.360 kb on + strandat 1279.360 kb on + strandat 1279.360 kb on + strandat 1279.360 kb on + strandat 1279.360 kb on + strandat 1279.361 kb on - strandat 1279.361 kb on - strandat 1279.361 kb on - strandat 1279.362 kb on + strandat 1279.362 kb on + strandat 1279.362 kb on + strandat 1279.362 kb on + strandat 1279.362 kb on + strandat 1279.362 kb on + strandat 1279.363 kb on - strandat 1279.363 kb on - strandat 1279.363 kb on - strandat 1279.363 kb on - strandat 1279.363 kb on - strandat 1279.363 kb on - strandat 1279.363 kb on - strandat 1279.363 kb on - strandat 1279.363 kb on - strandat 1279.363 kb on - strandat 1279.438 kb on + strandat 1279.438 kb on + strandat 1279.439 kb on - strandat 1279.439 kb on - strandat 1279.439 kb on - strandat 1279.439 kb on - strandat 1279.498 kb on + strand, within ABZR86_RS05660at 1279.498 kb on + strand, within ABZR86_RS05660at 1279.498 kb on + strand, within ABZR86_RS05660at 1279.498 kb on + strand, within ABZR86_RS05660at 1279.498 kb on + strand, within ABZR86_RS05660at 1279.498 kb on + strand, within ABZR86_RS05660at 1279.498 kb on + strand, within ABZR86_RS05660at 1279.499 kb on - strand, within ABZR86_RS05660at 1279.499 kb on - strand, within ABZR86_RS05660at 1279.499 kb on - strand, within ABZR86_RS05660at 1279.499 kb on - strand, within ABZR86_RS05660at 1279.499 kb on - strand, within ABZR86_RS05660at 1279.499 kb on - strand, within ABZR86_RS05660at 1279.499 kb on - strand, within ABZR86_RS05660at 1279.499 kb on - strand, within ABZR86_RS05660

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,275,764 + ABZR86_RS05645 0.30 +1.1
1,275,764 + ABZR86_RS05645 0.30 -0.1
1,275,765 - ABZR86_RS05645 0.30 +0.6
1,275,821 + ABZR86_RS05645 0.35 +0.1
1,275,822 - ABZR86_RS05645 0.35 -0.1
1,275,822 - ABZR86_RS05645 0.35 +0.7
1,275,822 - ABZR86_RS05645 0.35 +0.2
1,275,822 - ABZR86_RS05645 0.35 +0.3
1,275,822 - ABZR86_RS05645 0.35 -0.5
1,275,822 - ABZR86_RS05645 0.35 +0.3
1,276,196 + ABZR86_RS05645 0.69 +0.6
1,276,196 + ABZR86_RS05645 0.69 +0.6
1,276,196 + ABZR86_RS05645 0.69 +1.2
1,276,196 + ABZR86_RS05645 0.69 +1.8
1,276,197 - ABZR86_RS05645 0.69 +0.5
1,276,197 - ABZR86_RS05645 0.69 +1.3
1,276,197 - ABZR86_RS05645 0.69 +1.3
1,276,197 - ABZR86_RS05645 0.69 +1.4
1,276,197 - ABZR86_RS05645 0.69 +0.4
1,276,197 - ABZR86_RS05645 0.69 -0.5
1,276,197 - ABZR86_RS05645 0.69 +0.0
1,276,197 - ABZR86_RS05645 0.69 +0.8
1,276,197 - ABZR86_RS05645 0.69 +0.9
1,276,275 + ABZR86_RS05645 0.76 -0.7
1,276,275 + ABZR86_RS05645 0.76 +2.8
1,276,352 + ABZR86_RS05645 0.82 +0.3
1,276,352 + ABZR86_RS05645 0.82 -0.5
1,276,352 + ABZR86_RS05645 0.82 +0.3
1,276,353 - ABZR86_RS05645 0.83 +1.7
1,276,353 - ABZR86_RS05645 0.83 +0.9
1,276,388 + ABZR86_RS05645 0.86 -0.6
1,276,388 + ABZR86_RS05645 0.86 +0.8
1,276,389 - ABZR86_RS05645 0.86 +1.5
1,276,389 - ABZR86_RS05645 0.86 +0.1
1,276,454 + +1.0
1,276,454 + +2.0
1,276,454 + +0.2
1,276,454 + +1.0
1,276,455 - +0.7
1,276,455 - +0.4
1,276,455 - -0.2
1,276,455 - +0.5
1,276,529 + +0.8
1,276,529 + +0.3
1,276,529 + -0.2
1,276,530 - -0.7
1,276,530 - -0.0
1,276,533 - +0.0
1,276,533 - -0.7
1,276,533 - +0.1
1,279,360 + +0.9
1,279,360 + +0.1
1,279,360 + +0.5
1,279,360 + +0.3
1,279,360 + +0.7
1,279,360 + +1.4
1,279,361 - -1.0
1,279,361 - -0.2
1,279,361 - -0.7
1,279,362 + -0.5
1,279,362 + +0.8
1,279,362 + +1.2
1,279,362 + -1.2
1,279,362 + -0.7
1,279,362 + +0.7
1,279,363 - -0.3
1,279,363 - -0.5
1,279,363 - -0.7
1,279,363 - +0.3
1,279,363 - +0.9
1,279,363 - +0.1
1,279,363 - -1.0
1,279,363 - +0.0
1,279,363 - -0.1
1,279,363 - +0.8
1,279,438 + +0.8
1,279,438 + -1.2
1,279,439 - +0.8
1,279,439 - -0.5
1,279,439 - -0.6
1,279,439 - -0.5
1,279,498 + ABZR86_RS05660 0.13 -0.8
1,279,498 + ABZR86_RS05660 0.13 -0.3
1,279,498 + ABZR86_RS05660 0.13 -0.8
1,279,498 + ABZR86_RS05660 0.13 +0.1
1,279,498 + ABZR86_RS05660 0.13 -0.7
1,279,498 + ABZR86_RS05660 0.13 +0.9
1,279,498 + ABZR86_RS05660 0.13 +1.1
1,279,499 - ABZR86_RS05660 0.13 -1.1
1,279,499 - ABZR86_RS05660 0.13 +1.8
1,279,499 - ABZR86_RS05660 0.13 -0.2
1,279,499 - ABZR86_RS05660 0.13 -0.8
1,279,499 - ABZR86_RS05660 0.13 -0.3
1,279,499 - ABZR86_RS05660 0.13 +0.2
1,279,499 - ABZR86_RS05660 0.13 -0.6
1,279,499 - ABZR86_RS05660 0.13 -0.3

Or see this region's nucleotide sequence