Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS04775

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS04770 and ABZR86_RS04775 are separated by 81 nucleotidesABZR86_RS04775 and ABZR86_RS04780 are separated by 71 nucleotidesABZR86_RS04780 and ABZR86_RS04785 are separated by 99 nucleotides ABZR86_RS04770: ABZR86_RS04770 - cytochrome C, at 1,067,810 to 1,069,087 _RS04770 ABZR86_RS04775: ABZR86_RS04775 - c-type cytochrome, at 1,069,169 to 1,069,504 _RS04775 ABZR86_RS04780: ABZR86_RS04780 - hypothetical protein, at 1,069,576 to 1,070,232 _RS04780 ABZR86_RS04785: ABZR86_RS04785 - sigma-70 family RNA polymerase sigma factor, at 1,070,332 to 1,070,916 _RS04785 Position (kb) 1069 1070Strain fitness (log2 ratio) -2 -1 0 1at 1068.392 kb on + strand, within ABZR86_RS04770at 1068.401 kb on + strand, within ABZR86_RS04770at 1068.416 kb on + strand, within ABZR86_RS04770at 1068.434 kb on + strand, within ABZR86_RS04770at 1068.434 kb on + strand, within ABZR86_RS04770at 1068.434 kb on + strand, within ABZR86_RS04770at 1068.434 kb on + strand, within ABZR86_RS04770at 1068.435 kb on - strand, within ABZR86_RS04770at 1068.435 kb on - strand, within ABZR86_RS04770at 1068.515 kb on + strand, within ABZR86_RS04770at 1068.530 kb on + strand, within ABZR86_RS04770at 1068.530 kb on + strand, within ABZR86_RS04770at 1068.531 kb on - strand, within ABZR86_RS04770at 1068.642 kb on - strand, within ABZR86_RS04770at 1068.654 kb on - strand, within ABZR86_RS04770at 1068.659 kb on + strand, within ABZR86_RS04770at 1068.660 kb on - strand, within ABZR86_RS04770at 1068.695 kb on + strand, within ABZR86_RS04770at 1068.696 kb on - strand, within ABZR86_RS04770at 1068.696 kb on - strand, within ABZR86_RS04770at 1068.696 kb on - strand, within ABZR86_RS04770at 1068.696 kb on - strand, within ABZR86_RS04770at 1068.723 kb on - strand, within ABZR86_RS04770at 1068.791 kb on + strand, within ABZR86_RS04770at 1068.791 kb on + strand, within ABZR86_RS04770at 1068.792 kb on - strand, within ABZR86_RS04770at 1068.792 kb on - strand, within ABZR86_RS04770at 1068.792 kb on - strand, within ABZR86_RS04770at 1068.792 kb on - strand, within ABZR86_RS04770at 1068.792 kb on - strand, within ABZR86_RS04770at 1068.794 kb on - strand, within ABZR86_RS04770at 1068.794 kb on - strand, within ABZR86_RS04770at 1068.794 kb on - strand, within ABZR86_RS04770at 1068.809 kb on + strand, within ABZR86_RS04770at 1068.809 kb on + strand, within ABZR86_RS04770at 1068.809 kb on + strand, within ABZR86_RS04770at 1068.809 kb on + strand, within ABZR86_RS04770at 1068.809 kb on + strand, within ABZR86_RS04770at 1068.809 kb on + strand, within ABZR86_RS04770at 1068.809 kb on + strand, within ABZR86_RS04770at 1068.809 kb on + strand, within ABZR86_RS04770at 1068.810 kb on - strand, within ABZR86_RS04770at 1068.810 kb on - strand, within ABZR86_RS04770at 1068.810 kb on - strand, within ABZR86_RS04770at 1068.810 kb on - strand, within ABZR86_RS04770at 1068.810 kb on - strand, within ABZR86_RS04770at 1068.810 kb on - strand, within ABZR86_RS04770at 1068.811 kb on + strand, within ABZR86_RS04770at 1068.812 kb on - strand, within ABZR86_RS04770at 1068.872 kb on + strand, within ABZR86_RS04770at 1068.911 kb on + strand, within ABZR86_RS04770at 1068.941 kb on + strand, within ABZR86_RS04770at 1068.942 kb on - strand, within ABZR86_RS04770at 1068.942 kb on - strand, within ABZR86_RS04770at 1069.153 kb on - strandat 1069.153 kb on - strandat 1069.325 kb on + strand, within ABZR86_RS04775at 1069.326 kb on - strand, within ABZR86_RS04775at 1069.331 kb on + strand, within ABZR86_RS04775at 1069.391 kb on + strand, within ABZR86_RS04775at 1069.392 kb on - strand, within ABZR86_RS04775at 1069.392 kb on - strand, within ABZR86_RS04775at 1069.392 kb on - strand, within ABZR86_RS04775at 1069.392 kb on - strand, within ABZR86_RS04775at 1069.440 kb on - strand, within ABZR86_RS04775at 1069.440 kb on - strand, within ABZR86_RS04775at 1069.600 kb on - strandat 1069.804 kb on + strand, within ABZR86_RS04780at 1069.804 kb on + strand, within ABZR86_RS04780at 1069.849 kb on + strand, within ABZR86_RS04780at 1069.849 kb on + strand, within ABZR86_RS04780at 1069.849 kb on + strand, within ABZR86_RS04780at 1069.850 kb on - strand, within ABZR86_RS04780at 1069.850 kb on - strand, within ABZR86_RS04780at 1069.850 kb on - strand, within ABZR86_RS04780at 1069.852 kb on + strand, within ABZR86_RS04780at 1069.852 kb on + strand, within ABZR86_RS04780at 1069.852 kb on + strand, within ABZR86_RS04780at 1069.852 kb on + strand, within ABZR86_RS04780at 1069.853 kb on - strand, within ABZR86_RS04780at 1069.858 kb on + strand, within ABZR86_RS04780at 1070.059 kb on + strand, within ABZR86_RS04780at 1070.060 kb on - strand, within ABZR86_RS04780at 1070.072 kb on - strand, within ABZR86_RS04780at 1070.077 kb on + strand, within ABZR86_RS04780at 1070.077 kb on + strand, within ABZR86_RS04780at 1070.077 kb on + strand, within ABZR86_RS04780at 1070.077 kb on + strand, within ABZR86_RS04780at 1070.078 kb on - strand, within ABZR86_RS04780at 1070.078 kb on - strand, within ABZR86_RS04780at 1070.080 kb on + strand, within ABZR86_RS04780at 1070.080 kb on + strand, within ABZR86_RS04780at 1070.081 kb on - strand, within ABZR86_RS04780at 1070.081 kb on - strand, within ABZR86_RS04780at 1070.270 kb on + strandat 1070.270 kb on + strandat 1070.270 kb on + strandat 1070.270 kb on + strandat 1070.271 kb on - strandat 1070.271 kb on - strandat 1070.431 kb on + strand, within ABZR86_RS04785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
1,068,392 + ABZR86_RS04770 0.46 +0.6
1,068,401 + ABZR86_RS04770 0.46 +0.6
1,068,416 + ABZR86_RS04770 0.47 -0.7
1,068,434 + ABZR86_RS04770 0.49 -1.0
1,068,434 + ABZR86_RS04770 0.49 -0.3
1,068,434 + ABZR86_RS04770 0.49 -0.4
1,068,434 + ABZR86_RS04770 0.49 -0.4
1,068,435 - ABZR86_RS04770 0.49 +0.1
1,068,435 - ABZR86_RS04770 0.49 +0.6
1,068,515 + ABZR86_RS04770 0.55 +0.2
1,068,530 + ABZR86_RS04770 0.56 -0.4
1,068,530 + ABZR86_RS04770 0.56 -0.4
1,068,531 - ABZR86_RS04770 0.56 +0.3
1,068,642 - ABZR86_RS04770 0.65 -0.2
1,068,654 - ABZR86_RS04770 0.66 +0.3
1,068,659 + ABZR86_RS04770 0.66 -1.3
1,068,660 - ABZR86_RS04770 0.67 +0.6
1,068,695 + ABZR86_RS04770 0.69 +0.1
1,068,696 - ABZR86_RS04770 0.69 -0.9
1,068,696 - ABZR86_RS04770 0.69 -0.2
1,068,696 - ABZR86_RS04770 0.69 -0.4
1,068,696 - ABZR86_RS04770 0.69 +1.2
1,068,723 - ABZR86_RS04770 0.71 +0.6
1,068,791 + ABZR86_RS04770 0.77 +0.5
1,068,791 + ABZR86_RS04770 0.77 +0.3
1,068,792 - ABZR86_RS04770 0.77 -0.2
1,068,792 - ABZR86_RS04770 0.77 -0.1
1,068,792 - ABZR86_RS04770 0.77 +0.7
1,068,792 - ABZR86_RS04770 0.77 +0.3
1,068,792 - ABZR86_RS04770 0.77 -1.4
1,068,794 - ABZR86_RS04770 0.77 -0.2
1,068,794 - ABZR86_RS04770 0.77 -0.3
1,068,794 - ABZR86_RS04770 0.77 +0.4
1,068,809 + ABZR86_RS04770 0.78 -0.6
1,068,809 + ABZR86_RS04770 0.78 -0.0
1,068,809 + ABZR86_RS04770 0.78 -0.2
1,068,809 + ABZR86_RS04770 0.78 +0.2
1,068,809 + ABZR86_RS04770 0.78 -0.5
1,068,809 + ABZR86_RS04770 0.78 +0.8
1,068,809 + ABZR86_RS04770 0.78 +0.3
1,068,809 + ABZR86_RS04770 0.78 +0.4
1,068,810 - ABZR86_RS04770 0.78 +0.2
1,068,810 - ABZR86_RS04770 0.78 -0.5
1,068,810 - ABZR86_RS04770 0.78 -0.2
1,068,810 - ABZR86_RS04770 0.78 -0.8
1,068,810 - ABZR86_RS04770 0.78 -0.0
1,068,810 - ABZR86_RS04770 0.78 -0.4
1,068,811 + ABZR86_RS04770 0.78 -0.8
1,068,812 - ABZR86_RS04770 0.78 -0.6
1,068,872 + ABZR86_RS04770 0.83 +0.4
1,068,911 + ABZR86_RS04770 0.86 -0.4
1,068,941 + ABZR86_RS04770 0.88 +0.8
1,068,942 - ABZR86_RS04770 0.89 +0.2
1,068,942 - ABZR86_RS04770 0.89 -0.3
1,069,153 - +1.2
1,069,153 - -0.1
1,069,325 + ABZR86_RS04775 0.46 +0.8
1,069,326 - ABZR86_RS04775 0.47 +0.1
1,069,331 + ABZR86_RS04775 0.48 +0.8
1,069,391 + ABZR86_RS04775 0.66 -1.0
1,069,392 - ABZR86_RS04775 0.66 +0.7
1,069,392 - ABZR86_RS04775 0.66 +0.2
1,069,392 - ABZR86_RS04775 0.66 -0.1
1,069,392 - ABZR86_RS04775 0.66 +0.2
1,069,440 - ABZR86_RS04775 0.81 +0.3
1,069,440 - ABZR86_RS04775 0.81 -0.6
1,069,600 - -0.1
1,069,804 + ABZR86_RS04780 0.35 -0.8
1,069,804 + ABZR86_RS04780 0.35 -0.3
1,069,849 + ABZR86_RS04780 0.42 +0.3
1,069,849 + ABZR86_RS04780 0.42 -0.0
1,069,849 + ABZR86_RS04780 0.42 -0.6
1,069,850 - ABZR86_RS04780 0.42 -0.8
1,069,850 - ABZR86_RS04780 0.42 -0.3
1,069,850 - ABZR86_RS04780 0.42 -2.0
1,069,852 + ABZR86_RS04780 0.42 +1.0
1,069,852 + ABZR86_RS04780 0.42 -0.3
1,069,852 + ABZR86_RS04780 0.42 +0.6
1,069,852 + ABZR86_RS04780 0.42 -0.3
1,069,853 - ABZR86_RS04780 0.42 -0.3
1,069,858 + ABZR86_RS04780 0.43 -0.2
1,070,059 + ABZR86_RS04780 0.74 +1.0
1,070,060 - ABZR86_RS04780 0.74 +0.1
1,070,072 - ABZR86_RS04780 0.75 +0.1
1,070,077 + ABZR86_RS04780 0.76 -0.0
1,070,077 + ABZR86_RS04780 0.76 -0.7
1,070,077 + ABZR86_RS04780 0.76 +0.2
1,070,077 + ABZR86_RS04780 0.76 +1.5
1,070,078 - ABZR86_RS04780 0.76 +0.7
1,070,078 - ABZR86_RS04780 0.76 +0.3
1,070,080 + ABZR86_RS04780 0.77 -0.9
1,070,080 + ABZR86_RS04780 0.77 -0.2
1,070,081 - ABZR86_RS04780 0.77 +0.6
1,070,081 - ABZR86_RS04780 0.77 -0.1
1,070,270 + -0.9
1,070,270 + -2.4
1,070,270 + +0.3
1,070,270 + +0.1
1,070,271 - -0.6
1,070,271 - +0.7
1,070,431 + ABZR86_RS04785 0.17 -0.6

Or see this region's nucleotide sequence