Strain Fitness in Pantoea sp. MT58 around IAI47_06980

Experiment: Cobalt chloride 10 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_06975 and IAI47_06980 are separated by 161 nucleotidesIAI47_06980 and IAI47_06985 are separated by 4 nucleotides IAI47_06975: IAI47_06975 - amylovoran biosynthesis protein AmsF, at 1,468,460 to 1,470,676 _06975 IAI47_06980: IAI47_06980 - colanic acid biosynthesis pyruvyl transferase WcaK, at 1,470,838 to 1,472,100 _06980 IAI47_06985: IAI47_06985 - colanic acid biosynthesis glycosyltransferase WcaL, at 1,472,105 to 1,473,328 _06985 Position (kb) 1470 1471 1472 1473Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1469.866 kb on + strand, within IAI47_06975at 1469.866 kb on + strand, within IAI47_06975at 1469.866 kb on + strand, within IAI47_06975at 1469.902 kb on + strand, within IAI47_06975at 1469.902 kb on + strand, within IAI47_06975at 1469.941 kb on + strand, within IAI47_06975at 1469.941 kb on + strand, within IAI47_06975at 1470.005 kb on + strand, within IAI47_06975at 1470.005 kb on + strand, within IAI47_06975at 1470.035 kb on + strand, within IAI47_06975at 1470.035 kb on + strand, within IAI47_06975at 1470.041 kb on + strand, within IAI47_06975at 1470.041 kb on + strand, within IAI47_06975at 1470.041 kb on + strand, within IAI47_06975at 1470.041 kb on + strand, within IAI47_06975at 1470.041 kb on + strand, within IAI47_06975at 1470.041 kb on + strand, within IAI47_06975at 1470.041 kb on + strand, within IAI47_06975at 1470.041 kb on + strand, within IAI47_06975at 1470.041 kb on + strand, within IAI47_06975at 1470.041 kb on + strand, within IAI47_06975at 1470.041 kb on + strand, within IAI47_06975at 1470.041 kb on + strand, within IAI47_06975at 1470.042 kb on - strand, within IAI47_06975at 1470.042 kb on - strand, within IAI47_06975at 1470.063 kb on + strand, within IAI47_06975at 1470.110 kb on + strand, within IAI47_06975at 1470.124 kb on - strand, within IAI47_06975at 1470.185 kb on - strand, within IAI47_06975at 1470.185 kb on - strand, within IAI47_06975at 1470.251 kb on - strand, within IAI47_06975at 1470.251 kb on - strand, within IAI47_06975at 1470.314 kb on + strand, within IAI47_06975at 1470.314 kb on + strand, within IAI47_06975at 1470.314 kb on + strand, within IAI47_06975at 1470.347 kb on + strand, within IAI47_06975at 1470.347 kb on + strand, within IAI47_06975at 1470.348 kb on - strand, within IAI47_06975at 1470.595 kb on + strandat 1470.595 kb on + strandat 1470.601 kb on + strandat 1470.656 kb on + strandat 1470.656 kb on + strandat 1470.657 kb on - strandat 1470.668 kb on - strandat 1470.674 kb on + strandat 1470.675 kb on - strandat 1470.684 kb on + strandat 1470.684 kb on + strandat 1470.684 kb on + strandat 1470.684 kb on + strandat 1470.729 kb on + strandat 1470.729 kb on + strandat 1470.729 kb on + strandat 1470.729 kb on + strandat 1470.730 kb on - strandat 1470.759 kb on + strandat 1470.759 kb on + strandat 1470.759 kb on + strandat 1470.759 kb on + strandat 1470.765 kb on + strandat 1470.938 kb on + strandat 1470.951 kb on + strandat 1470.953 kb on + strandat 1470.998 kb on + strand, within IAI47_06980at 1470.998 kb on + strand, within IAI47_06980at 1471.228 kb on + strand, within IAI47_06980at 1471.229 kb on - strand, within IAI47_06980at 1471.235 kb on + strand, within IAI47_06980at 1471.235 kb on + strand, within IAI47_06980at 1471.285 kb on + strand, within IAI47_06980at 1471.428 kb on + strand, within IAI47_06980at 1471.463 kb on + strand, within IAI47_06980at 1471.530 kb on + strand, within IAI47_06980at 1471.550 kb on + strand, within IAI47_06980at 1471.690 kb on + strand, within IAI47_06980at 1471.848 kb on + strand, within IAI47_06980at 1471.985 kb on + strandat 1472.005 kb on + strandat 1472.090 kb on + strandat 1472.090 kb on + strandat 1472.093 kb on + strandat 1472.093 kb on + strandat 1472.093 kb on + strandat 1472.093 kb on + strandat 1472.098 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 10 uM, anaerobic
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1,469,866 + IAI47_06975 0.63 -0.4
1,469,866 + IAI47_06975 0.63 -0.0
1,469,866 + IAI47_06975 0.63 -0.5
1,469,902 + IAI47_06975 0.65 +0.4
1,469,902 + IAI47_06975 0.65 -2.3
1,469,941 + IAI47_06975 0.67 +1.0
1,469,941 + IAI47_06975 0.67 -2.3
1,470,005 + IAI47_06975 0.70 +0.4
1,470,005 + IAI47_06975 0.70 -0.0
1,470,035 + IAI47_06975 0.71 -2.4
1,470,035 + IAI47_06975 0.71 -1.3
1,470,041 + IAI47_06975 0.71 -0.5
1,470,041 + IAI47_06975 0.71 -0.4
1,470,041 + IAI47_06975 0.71 +0.2
1,470,041 + IAI47_06975 0.71 +1.2
1,470,041 + IAI47_06975 0.71 -2.1
1,470,041 + IAI47_06975 0.71 -0.9
1,470,041 + IAI47_06975 0.71 -1.9
1,470,041 + IAI47_06975 0.71 +0.6
1,470,041 + IAI47_06975 0.71 -2.0
1,470,041 + IAI47_06975 0.71 -0.5
1,470,041 + IAI47_06975 0.71 -0.2
1,470,041 + IAI47_06975 0.71 -0.2
1,470,042 - IAI47_06975 0.71 +1.5
1,470,042 - IAI47_06975 0.71 +0.7
1,470,063 + IAI47_06975 0.72 +0.2
1,470,110 + IAI47_06975 0.74 -0.8
1,470,124 - IAI47_06975 0.75 -1.1
1,470,185 - IAI47_06975 0.78 -1.1
1,470,185 - IAI47_06975 0.78 +0.4
1,470,251 - IAI47_06975 0.81 -0.5
1,470,251 - IAI47_06975 0.81 +0.1
1,470,314 + IAI47_06975 0.84 -1.0
1,470,314 + IAI47_06975 0.84 -1.2
1,470,314 + IAI47_06975 0.84 +1.2
1,470,347 + IAI47_06975 0.85 +0.5
1,470,347 + IAI47_06975 0.85 -0.1
1,470,348 - IAI47_06975 0.85 -0.6
1,470,595 + -1.5
1,470,595 + +0.8
1,470,601 + +0.2
1,470,656 + +0.1
1,470,656 + +0.4
1,470,657 - +1.9
1,470,668 - -0.1
1,470,674 + -0.2
1,470,675 - -1.5
1,470,684 + -1.3
1,470,684 + +0.2
1,470,684 + +1.0
1,470,684 + +0.5
1,470,729 + +0.2
1,470,729 + -1.2
1,470,729 + +1.6
1,470,729 + -0.1
1,470,730 - -1.7
1,470,759 + -0.5
1,470,759 + -0.6
1,470,759 + -1.9
1,470,759 + +0.1
1,470,765 + -1.7
1,470,938 + -1.4
1,470,951 + +0.1
1,470,953 + -0.3
1,470,998 + IAI47_06980 0.13 -2.1
1,470,998 + IAI47_06980 0.13 -3.0
1,471,228 + IAI47_06980 0.31 -1.8
1,471,229 - IAI47_06980 0.31 -1.5
1,471,235 + IAI47_06980 0.31 -1.5
1,471,235 + IAI47_06980 0.31 +0.8
1,471,285 + IAI47_06980 0.35 -1.6
1,471,428 + IAI47_06980 0.47 -0.2
1,471,463 + IAI47_06980 0.49 -2.0
1,471,530 + IAI47_06980 0.55 -0.8
1,471,550 + IAI47_06980 0.56 +0.0
1,471,690 + IAI47_06980 0.67 -0.2
1,471,848 + IAI47_06980 0.80 -2.0
1,471,985 + -1.9
1,472,005 + -0.6
1,472,090 + -0.3
1,472,090 + -0.1
1,472,093 + -0.7
1,472,093 + +0.8
1,472,093 + -1.3
1,472,093 + +0.0
1,472,098 + -0.1

Or see this region's nucleotide sequence