Experiment: Cobalt chloride 10 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_06975 and IAI47_06980 are separated by 161 nucleotides IAI47_06980 and IAI47_06985 are separated by 4 nucleotides
IAI47_06975: IAI47_06975 - amylovoran biosynthesis protein AmsF, at 1,468,460 to 1,470,676
_06975
IAI47_06980: IAI47_06980 - colanic acid biosynthesis pyruvyl transferase WcaK, at 1,470,838 to 1,472,100
_06980
IAI47_06985: IAI47_06985 - colanic acid biosynthesis glycosyltransferase WcaL, at 1,472,105 to 1,473,328
_06985
Position (kb)
1470
1471
1472
1473 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1469.866 kb on + strand, within IAI47_06975 at 1469.866 kb on + strand, within IAI47_06975 at 1469.866 kb on + strand, within IAI47_06975 at 1469.902 kb on + strand, within IAI47_06975 at 1469.902 kb on + strand, within IAI47_06975 at 1469.941 kb on + strand, within IAI47_06975 at 1469.941 kb on + strand, within IAI47_06975 at 1470.005 kb on + strand, within IAI47_06975 at 1470.005 kb on + strand, within IAI47_06975 at 1470.035 kb on + strand, within IAI47_06975 at 1470.035 kb on + strand, within IAI47_06975 at 1470.041 kb on + strand, within IAI47_06975 at 1470.041 kb on + strand, within IAI47_06975 at 1470.041 kb on + strand, within IAI47_06975 at 1470.041 kb on + strand, within IAI47_06975 at 1470.041 kb on + strand, within IAI47_06975 at 1470.041 kb on + strand, within IAI47_06975 at 1470.041 kb on + strand, within IAI47_06975 at 1470.041 kb on + strand, within IAI47_06975 at 1470.041 kb on + strand, within IAI47_06975 at 1470.041 kb on + strand, within IAI47_06975 at 1470.041 kb on + strand, within IAI47_06975 at 1470.041 kb on + strand, within IAI47_06975 at 1470.042 kb on - strand, within IAI47_06975 at 1470.042 kb on - strand, within IAI47_06975 at 1470.063 kb on + strand, within IAI47_06975 at 1470.110 kb on + strand, within IAI47_06975 at 1470.124 kb on - strand, within IAI47_06975 at 1470.185 kb on - strand, within IAI47_06975 at 1470.185 kb on - strand, within IAI47_06975 at 1470.251 kb on - strand, within IAI47_06975 at 1470.251 kb on - strand, within IAI47_06975 at 1470.314 kb on + strand, within IAI47_06975 at 1470.314 kb on + strand, within IAI47_06975 at 1470.314 kb on + strand, within IAI47_06975 at 1470.347 kb on + strand, within IAI47_06975 at 1470.347 kb on + strand, within IAI47_06975 at 1470.348 kb on - strand, within IAI47_06975 at 1470.595 kb on + strand at 1470.595 kb on + strand at 1470.601 kb on + strand at 1470.656 kb on + strand at 1470.656 kb on + strand at 1470.657 kb on - strand at 1470.668 kb on - strand at 1470.674 kb on + strand at 1470.675 kb on - strand at 1470.684 kb on + strand at 1470.684 kb on + strand at 1470.684 kb on + strand at 1470.684 kb on + strand at 1470.729 kb on + strand at 1470.729 kb on + strand at 1470.729 kb on + strand at 1470.729 kb on + strand at 1470.730 kb on - strand at 1470.759 kb on + strand at 1470.759 kb on + strand at 1470.759 kb on + strand at 1470.759 kb on + strand at 1470.765 kb on + strand at 1470.938 kb on + strand at 1470.951 kb on + strand at 1470.953 kb on + strand at 1470.998 kb on + strand, within IAI47_06980 at 1470.998 kb on + strand, within IAI47_06980 at 1471.228 kb on + strand, within IAI47_06980 at 1471.229 kb on - strand, within IAI47_06980 at 1471.235 kb on + strand, within IAI47_06980 at 1471.235 kb on + strand, within IAI47_06980 at 1471.285 kb on + strand, within IAI47_06980 at 1471.428 kb on + strand, within IAI47_06980 at 1471.463 kb on + strand, within IAI47_06980 at 1471.530 kb on + strand, within IAI47_06980 at 1471.550 kb on + strand, within IAI47_06980 at 1471.690 kb on + strand, within IAI47_06980 at 1471.848 kb on + strand, within IAI47_06980 at 1471.985 kb on + strand at 1472.005 kb on + strand at 1472.090 kb on + strand at 1472.090 kb on + strand at 1472.093 kb on + strand at 1472.093 kb on + strand at 1472.093 kb on + strand at 1472.093 kb on + strand at 1472.098 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 10 uM, anaerobic remove 1,469,866 + IAI47_06975 0.63 -0.4 1,469,866 + IAI47_06975 0.63 -0.0 1,469,866 + IAI47_06975 0.63 -0.5 1,469,902 + IAI47_06975 0.65 +0.4 1,469,902 + IAI47_06975 0.65 -2.3 1,469,941 + IAI47_06975 0.67 +1.0 1,469,941 + IAI47_06975 0.67 -2.3 1,470,005 + IAI47_06975 0.70 +0.4 1,470,005 + IAI47_06975 0.70 -0.0 1,470,035 + IAI47_06975 0.71 -2.4 1,470,035 + IAI47_06975 0.71 -1.3 1,470,041 + IAI47_06975 0.71 -0.5 1,470,041 + IAI47_06975 0.71 -0.4 1,470,041 + IAI47_06975 0.71 +0.2 1,470,041 + IAI47_06975 0.71 +1.2 1,470,041 + IAI47_06975 0.71 -2.1 1,470,041 + IAI47_06975 0.71 -0.9 1,470,041 + IAI47_06975 0.71 -1.9 1,470,041 + IAI47_06975 0.71 +0.6 1,470,041 + IAI47_06975 0.71 -2.0 1,470,041 + IAI47_06975 0.71 -0.5 1,470,041 + IAI47_06975 0.71 -0.2 1,470,041 + IAI47_06975 0.71 -0.2 1,470,042 - IAI47_06975 0.71 +1.5 1,470,042 - IAI47_06975 0.71 +0.7 1,470,063 + IAI47_06975 0.72 +0.2 1,470,110 + IAI47_06975 0.74 -0.8 1,470,124 - IAI47_06975 0.75 -1.1 1,470,185 - IAI47_06975 0.78 -1.1 1,470,185 - IAI47_06975 0.78 +0.4 1,470,251 - IAI47_06975 0.81 -0.5 1,470,251 - IAI47_06975 0.81 +0.1 1,470,314 + IAI47_06975 0.84 -1.0 1,470,314 + IAI47_06975 0.84 -1.2 1,470,314 + IAI47_06975 0.84 +1.2 1,470,347 + IAI47_06975 0.85 +0.5 1,470,347 + IAI47_06975 0.85 -0.1 1,470,348 - IAI47_06975 0.85 -0.6 1,470,595 + -1.5 1,470,595 + +0.8 1,470,601 + +0.2 1,470,656 + +0.1 1,470,656 + +0.4 1,470,657 - +1.9 1,470,668 - -0.1 1,470,674 + -0.2 1,470,675 - -1.5 1,470,684 + -1.3 1,470,684 + +0.2 1,470,684 + +1.0 1,470,684 + +0.5 1,470,729 + +0.2 1,470,729 + -1.2 1,470,729 + +1.6 1,470,729 + -0.1 1,470,730 - -1.7 1,470,759 + -0.5 1,470,759 + -0.6 1,470,759 + -1.9 1,470,759 + +0.1 1,470,765 + -1.7 1,470,938 + -1.4 1,470,951 + +0.1 1,470,953 + -0.3 1,470,998 + IAI47_06980 0.13 -2.1 1,470,998 + IAI47_06980 0.13 -3.0 1,471,228 + IAI47_06980 0.31 -1.8 1,471,229 - IAI47_06980 0.31 -1.5 1,471,235 + IAI47_06980 0.31 -1.5 1,471,235 + IAI47_06980 0.31 +0.8 1,471,285 + IAI47_06980 0.35 -1.6 1,471,428 + IAI47_06980 0.47 -0.2 1,471,463 + IAI47_06980 0.49 -2.0 1,471,530 + IAI47_06980 0.55 -0.8 1,471,550 + IAI47_06980 0.56 +0.0 1,471,690 + IAI47_06980 0.67 -0.2 1,471,848 + IAI47_06980 0.80 -2.0 1,471,985 + -1.9 1,472,005 + -0.6 1,472,090 + -0.3 1,472,090 + -0.1 1,472,093 + -0.7 1,472,093 + +0.8 1,472,093 + -1.3 1,472,093 + +0.0 1,472,098 + -0.1
Or see this region's nucleotide sequence