Strain Fitness in Rahnella sp. WP5 around EX31_RS18515

Experiment: Ammonium chloride (N); ShewMM media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS18510 and EX31_RS18515 are separated by 106 nucleotidesEX31_RS18515 and EX31_RS18520 are separated by 7 nucleotidesEX31_RS18520 and EX31_RS18525 are separated by 194 nucleotides EX31_RS18510: EX31_RS18510 - serine--tRNA ligase, at 273,576 to 274,868 _RS18510 EX31_RS18515: EX31_RS18515 - replication-associated recombination protein A, at 274,975 to 276,318 _RS18515 EX31_RS18520: EX31_RS18520 - outer membrane lipoprotein chaperone LolA, at 276,326 to 276,937 _RS18520 EX31_RS18525: EX31_RS18525 - DNA translocase FtsK, at 277,132 to 280,578 _RS18525 Position (kb) 274 275 276 277Strain fitness (log2 ratio) -2 -1 0 1 2 3at 274.946 kb on - strandat 274.946 kb on - strandat 274.960 kb on - strandat 274.977 kb on - strandat 275.072 kb on + strandat 275.072 kb on + strandat 275.072 kb on + strandat 275.072 kb on + strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.075 kb on + strandat 275.076 kb on - strandat 275.105 kb on + strandat 275.106 kb on - strandat 275.106 kb on - strandat 275.106 kb on - strandat 275.106 kb on - strandat 275.124 kb on - strand, within EX31_RS18515at 275.124 kb on - strand, within EX31_RS18515at 275.124 kb on - strand, within EX31_RS18515at 275.200 kb on - strand, within EX31_RS18515at 275.200 kb on - strand, within EX31_RS18515at 275.270 kb on + strand, within EX31_RS18515at 275.270 kb on + strand, within EX31_RS18515at 275.271 kb on - strand, within EX31_RS18515at 275.272 kb on + strand, within EX31_RS18515at 275.273 kb on - strand, within EX31_RS18515at 275.273 kb on - strand, within EX31_RS18515at 275.280 kb on + strand, within EX31_RS18515at 275.280 kb on + strand, within EX31_RS18515at 275.281 kb on - strand, within EX31_RS18515at 275.281 kb on - strand, within EX31_RS18515at 275.281 kb on - strand, within EX31_RS18515at 275.281 kb on - strand, within EX31_RS18515at 275.304 kb on - strand, within EX31_RS18515at 275.304 kb on - strand, within EX31_RS18515at 275.356 kb on - strand, within EX31_RS18515at 275.356 kb on - strand, within EX31_RS18515at 275.450 kb on + strand, within EX31_RS18515at 275.451 kb on - strand, within EX31_RS18515at 275.451 kb on - strand, within EX31_RS18515at 275.451 kb on - strand, within EX31_RS18515at 275.451 kb on - strand, within EX31_RS18515at 275.492 kb on + strand, within EX31_RS18515at 275.493 kb on - strand, within EX31_RS18515at 275.493 kb on - strand, within EX31_RS18515at 275.529 kb on + strand, within EX31_RS18515at 275.530 kb on - strand, within EX31_RS18515at 275.553 kb on - strand, within EX31_RS18515at 275.568 kb on + strand, within EX31_RS18515at 275.612 kb on - strand, within EX31_RS18515at 275.832 kb on + strand, within EX31_RS18515at 275.832 kb on + strand, within EX31_RS18515at 275.836 kb on + strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.840 kb on + strand, within EX31_RS18515at 275.840 kb on + strand, within EX31_RS18515at 275.840 kb on + strand, within EX31_RS18515at 275.841 kb on - strand, within EX31_RS18515at 275.841 kb on - strand, within EX31_RS18515at 275.841 kb on - strand, within EX31_RS18515at 275.913 kb on + strand, within EX31_RS18515at 275.913 kb on + strand, within EX31_RS18515at 275.913 kb on + strand, within EX31_RS18515at 275.913 kb on + strand, within EX31_RS18515at 275.914 kb on - strand, within EX31_RS18515at 275.914 kb on - strand, within EX31_RS18515at 276.055 kb on - strand, within EX31_RS18515at 276.077 kb on - strand, within EX31_RS18515at 276.077 kb on - strand, within EX31_RS18515at 276.077 kb on - strand, within EX31_RS18515at 276.078 kb on + strand, within EX31_RS18515at 276.078 kb on + strand, within EX31_RS18515at 276.078 kb on + strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.234 kb on + strandat 276.234 kb on + strandat 276.234 kb on + strandat 276.234 kb on + strandat 276.235 kb on - strandat 276.235 kb on - strandat 276.235 kb on - strandat 276.236 kb on + strandat 276.236 kb on + strandat 276.236 kb on + strandat 276.237 kb on - strandat 276.237 kb on - strandat 276.312 kb on + strandat 276.322 kb on - strandat 276.322 kb on - strandat 276.322 kb on - strandat 276.322 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.984 kb on - strandat 277.001 kb on - strandat 277.001 kb on - strandat 277.001 kb on - strandat 277.001 kb on - strandat 277.001 kb on - strandat 277.001 kb on - strandat 277.001 kb on - strandat 277.066 kb on + strandat 277.105 kb on + strandat 277.295 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
remove
274,946 - -1.9
274,946 - +0.9
274,960 - -2.0
274,977 - +0.8
275,072 + -0.4
275,072 + -2.5
275,072 + +1.3
275,072 + -0.5
275,073 - -0.3
275,073 - -0.9
275,073 - +0.8
275,073 - +0.0
275,073 - +0.9
275,075 + -0.4
275,076 - +0.7
275,105 + +0.1
275,106 - -0.5
275,106 - -0.3
275,106 - -0.1
275,106 - -0.1
275,124 - EX31_RS18515 0.11 -0.9
275,124 - EX31_RS18515 0.11 -0.4
275,124 - EX31_RS18515 0.11 +0.3
275,200 - EX31_RS18515 0.17 +0.9
275,200 - EX31_RS18515 0.17 +1.9
275,270 + EX31_RS18515 0.22 -0.4
275,270 + EX31_RS18515 0.22 +0.1
275,271 - EX31_RS18515 0.22 +0.9
275,272 + EX31_RS18515 0.22 +0.7
275,273 - EX31_RS18515 0.22 +0.6
275,273 - EX31_RS18515 0.22 +0.4
275,280 + EX31_RS18515 0.23 +0.5
275,280 + EX31_RS18515 0.23 +2.5
275,281 - EX31_RS18515 0.23 -1.4
275,281 - EX31_RS18515 0.23 -0.4
275,281 - EX31_RS18515 0.23 -1.3
275,281 - EX31_RS18515 0.23 +0.2
275,304 - EX31_RS18515 0.24 +2.1
275,304 - EX31_RS18515 0.24 -0.4
275,356 - EX31_RS18515 0.28 -0.0
275,356 - EX31_RS18515 0.28 +0.9
275,450 + EX31_RS18515 0.35 +0.6
275,451 - EX31_RS18515 0.35 +0.6
275,451 - EX31_RS18515 0.35 +0.2
275,451 - EX31_RS18515 0.35 +0.6
275,451 - EX31_RS18515 0.35 -0.6
275,492 + EX31_RS18515 0.38 -1.4
275,493 - EX31_RS18515 0.39 -0.0
275,493 - EX31_RS18515 0.39 +0.2
275,529 + EX31_RS18515 0.41 +1.1
275,530 - EX31_RS18515 0.41 +0.4
275,553 - EX31_RS18515 0.43 -0.2
275,568 + EX31_RS18515 0.44 +0.9
275,612 - EX31_RS18515 0.47 +0.2
275,832 + EX31_RS18515 0.64 +1.9
275,832 + EX31_RS18515 0.64 -0.4
275,836 + EX31_RS18515 0.64 -0.7
275,837 - EX31_RS18515 0.64 +0.1
275,837 - EX31_RS18515 0.64 -0.1
275,837 - EX31_RS18515 0.64 -0.4
275,837 - EX31_RS18515 0.64 +0.6
275,837 - EX31_RS18515 0.64 -0.2
275,840 + EX31_RS18515 0.64 -0.3
275,840 + EX31_RS18515 0.64 +0.6
275,840 + EX31_RS18515 0.64 -0.7
275,841 - EX31_RS18515 0.64 +0.8
275,841 - EX31_RS18515 0.64 -2.6
275,841 - EX31_RS18515 0.64 +0.2
275,913 + EX31_RS18515 0.70 +0.5
275,913 + EX31_RS18515 0.70 -0.1
275,913 + EX31_RS18515 0.70 +0.3
275,913 + EX31_RS18515 0.70 +0.5
275,914 - EX31_RS18515 0.70 +0.1
275,914 - EX31_RS18515 0.70 +1.9
276,055 - EX31_RS18515 0.80 -2.0
276,077 - EX31_RS18515 0.82 +0.7
276,077 - EX31_RS18515 0.82 -0.3
276,077 - EX31_RS18515 0.82 +1.0
276,078 + EX31_RS18515 0.82 +0.2
276,078 + EX31_RS18515 0.82 -0.9
276,078 + EX31_RS18515 0.82 -0.4
276,079 - EX31_RS18515 0.82 +0.8
276,079 - EX31_RS18515 0.82 -1.1
276,079 - EX31_RS18515 0.82 +1.1
276,079 - EX31_RS18515 0.82 -1.7
276,079 - EX31_RS18515 0.82 +2.6
276,079 - EX31_RS18515 0.82 +1.0
276,079 - EX31_RS18515 0.82 +0.7
276,079 - EX31_RS18515 0.82 -0.0
276,079 - EX31_RS18515 0.82 -0.3
276,079 - EX31_RS18515 0.82 -0.3
276,079 - EX31_RS18515 0.82 +1.1
276,079 - EX31_RS18515 0.82 -1.9
276,079 - EX31_RS18515 0.82 +1.9
276,234 + +0.5
276,234 + -1.3
276,234 + -1.3
276,234 + +1.9
276,235 - +0.4
276,235 - -0.6
276,235 - -2.7
276,236 + +1.1
276,236 + +0.2
276,236 + +0.5
276,237 - +0.8
276,237 - +0.4
276,312 + +1.5
276,322 - -0.0
276,322 - +1.4
276,322 - +0.5
276,322 - -0.4
276,948 - +0.0
276,948 - +0.5
276,948 - +0.3
276,948 - +0.1
276,948 - +0.4
276,948 - +0.4
276,948 - -0.3
276,948 - -0.4
276,984 - +0.4
277,001 - +2.9
277,001 - +0.6
277,001 - +1.1
277,001 - +0.1
277,001 - -0.2
277,001 - +1.8
277,001 - -0.1
277,066 + -0.2
277,105 + +2.1
277,295 - -1.6

Or see this region's nucleotide sequence