Strain Fitness in Rahnella sp. WP5 around EX31_RS16555

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS16550 and EX31_RS16555 are separated by 17 nucleotidesEX31_RS16555 and EX31_RS16560 are separated by 458 nucleotides EX31_RS16550: EX31_RS16550 - PTS sugar transporter subunit IIC, at 24,638 to 25,930 _RS16550 EX31_RS16555: EX31_RS16555 - PTS sugar transporter subunit IIB, at 25,948 to 26,277 _RS16555 EX31_RS16560: EX31_RS16560 - DeoR/GlpR transcriptional regulator, at 26,736 to 27,509 _RS16560 Position (kb) 25 26 27Strain fitness (log2 ratio) -2 -1 0 1 2 3at 25.015 kb on + strand, within EX31_RS16550at 25.016 kb on - strand, within EX31_RS16550at 25.026 kb on + strand, within EX31_RS16550at 25.026 kb on + strand, within EX31_RS16550at 25.026 kb on + strand, within EX31_RS16550at 25.026 kb on + strand, within EX31_RS16550at 25.026 kb on + strand, within EX31_RS16550at 25.026 kb on + strand, within EX31_RS16550at 25.026 kb on + strand, within EX31_RS16550at 25.027 kb on - strand, within EX31_RS16550at 25.027 kb on - strand, within EX31_RS16550at 25.027 kb on - strand, within EX31_RS16550at 25.027 kb on - strand, within EX31_RS16550at 25.102 kb on + strand, within EX31_RS16550at 25.102 kb on + strand, within EX31_RS16550at 25.103 kb on - strand, within EX31_RS16550at 25.143 kb on - strand, within EX31_RS16550at 25.161 kb on + strand, within EX31_RS16550at 25.162 kb on - strand, within EX31_RS16550at 25.162 kb on - strand, within EX31_RS16550at 25.232 kb on + strand, within EX31_RS16550at 25.233 kb on - strand, within EX31_RS16550at 25.233 kb on - strand, within EX31_RS16550at 25.233 kb on - strand, within EX31_RS16550at 25.233 kb on - strand, within EX31_RS16550at 25.233 kb on - strand, within EX31_RS16550at 25.233 kb on - strand, within EX31_RS16550at 25.233 kb on - strand, within EX31_RS16550at 25.285 kb on + strand, within EX31_RS16550at 25.286 kb on - strand, within EX31_RS16550at 25.301 kb on + strand, within EX31_RS16550at 25.301 kb on + strand, within EX31_RS16550at 25.301 kb on + strand, within EX31_RS16550at 25.302 kb on - strand, within EX31_RS16550at 25.302 kb on - strand, within EX31_RS16550at 25.310 kb on + strand, within EX31_RS16550at 25.310 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.334 kb on + strand, within EX31_RS16550at 25.335 kb on - strand, within EX31_RS16550at 25.335 kb on - strand, within EX31_RS16550at 25.335 kb on - strand, within EX31_RS16550at 25.335 kb on - strand, within EX31_RS16550at 25.335 kb on - strand, within EX31_RS16550at 25.335 kb on - strand, within EX31_RS16550at 25.335 kb on - strand, within EX31_RS16550at 25.335 kb on - strand, within EX31_RS16550at 25.335 kb on - strand, within EX31_RS16550at 25.337 kb on + strand, within EX31_RS16550at 25.338 kb on - strand, within EX31_RS16550at 25.338 kb on - strand, within EX31_RS16550at 25.340 kb on + strand, within EX31_RS16550at 25.340 kb on + strand, within EX31_RS16550at 25.340 kb on + strand, within EX31_RS16550at 25.340 kb on + strand, within EX31_RS16550at 25.340 kb on + strand, within EX31_RS16550at 25.340 kb on + strand, within EX31_RS16550at 25.340 kb on + strand, within EX31_RS16550at 25.340 kb on + strand, within EX31_RS16550at 25.341 kb on - strand, within EX31_RS16550at 25.341 kb on - strand, within EX31_RS16550at 25.353 kb on + strand, within EX31_RS16550at 25.354 kb on - strand, within EX31_RS16550at 25.354 kb on - strand, within EX31_RS16550at 25.366 kb on + strand, within EX31_RS16550at 25.367 kb on - strand, within EX31_RS16550at 25.367 kb on - strand, within EX31_RS16550at 25.367 kb on - strand, within EX31_RS16550at 25.449 kb on + strand, within EX31_RS16550at 25.449 kb on + strand, within EX31_RS16550at 25.449 kb on + strand, within EX31_RS16550at 25.449 kb on + strand, within EX31_RS16550at 25.449 kb on + strand, within EX31_RS16550at 25.449 kb on + strand, within EX31_RS16550at 25.449 kb on + strand, within EX31_RS16550at 25.449 kb on + strand, within EX31_RS16550at 25.449 kb on + strand, within EX31_RS16550at 25.449 kb on + strand, within EX31_RS16550at 25.450 kb on - strand, within EX31_RS16550at 25.450 kb on - strand, within EX31_RS16550at 25.450 kb on - strand, within EX31_RS16550at 25.450 kb on - strand, within EX31_RS16550at 25.450 kb on - strand, within EX31_RS16550at 25.450 kb on - strand, within EX31_RS16550at 25.450 kb on - strand, within EX31_RS16550at 25.450 kb on - strand, within EX31_RS16550at 25.451 kb on + strand, within EX31_RS16550at 25.451 kb on + strand, within EX31_RS16550at 25.451 kb on + strand, within EX31_RS16550at 25.452 kb on - strand, within EX31_RS16550at 25.452 kb on - strand, within EX31_RS16550at 25.452 kb on - strand, within EX31_RS16550at 25.452 kb on - strand, within EX31_RS16550at 25.554 kb on + strand, within EX31_RS16550at 25.620 kb on + strand, within EX31_RS16550at 25.620 kb on + strand, within EX31_RS16550at 25.621 kb on - strand, within EX31_RS16550at 25.621 kb on - strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.638 kb on + strand, within EX31_RS16550at 25.639 kb on - strand, within EX31_RS16550at 25.639 kb on - strand, within EX31_RS16550at 25.639 kb on - strand, within EX31_RS16550at 25.639 kb on - strand, within EX31_RS16550at 25.643 kb on + strand, within EX31_RS16550at 25.643 kb on + strand, within EX31_RS16550at 25.644 kb on - strand, within EX31_RS16550at 25.657 kb on + strand, within EX31_RS16550at 25.658 kb on - strand, within EX31_RS16550at 25.658 kb on - strand, within EX31_RS16550at 25.659 kb on + strand, within EX31_RS16550at 25.659 kb on + strand, within EX31_RS16550at 25.659 kb on + strand, within EX31_RS16550at 25.659 kb on + strand, within EX31_RS16550at 25.660 kb on - strand, within EX31_RS16550at 25.660 kb on - strand, within EX31_RS16550at 25.660 kb on - strand, within EX31_RS16550at 25.660 kb on - strand, within EX31_RS16550at 25.660 kb on - strand, within EX31_RS16550at 25.660 kb on - strand, within EX31_RS16550at 25.660 kb on - strand, within EX31_RS16550at 25.660 kb on - strand, within EX31_RS16550at 25.685 kb on - strand, within EX31_RS16550at 25.700 kb on + strand, within EX31_RS16550at 25.700 kb on + strand, within EX31_RS16550at 25.700 kb on + strand, within EX31_RS16550at 25.701 kb on - strand, within EX31_RS16550at 25.701 kb on - strand, within EX31_RS16550at 25.714 kb on - strand, within EX31_RS16550at 25.748 kb on - strand, within EX31_RS16550at 25.759 kb on + strand, within EX31_RS16550at 25.790 kb on - strand, within EX31_RS16550at 25.813 kb on + strandat 25.814 kb on - strandat 25.855 kb on + strandat 25.934 kb on - strandat 25.937 kb on - strandat 25.937 kb on - strandat 25.949 kb on + strandat 25.954 kb on + strandat 26.176 kb on - strand, within EX31_RS16555at 26.220 kb on + strand, within EX31_RS16555at 26.221 kb on - strand, within EX31_RS16555at 26.244 kb on + strand, within EX31_RS16555at 26.293 kb on + strandat 26.300 kb on - strandat 26.300 kb on - strandat 26.306 kb on + strandat 26.337 kb on + strandat 26.337 kb on + strandat 26.619 kb on - strandat 26.625 kb on + strandat 26.660 kb on + strandat 26.660 kb on + strandat 26.661 kb on - strandat 26.672 kb on + strandat 26.673 kb on - strandat 26.694 kb on - strandat 26.694 kb on - strandat 26.713 kb on + strandat 26.729 kb on - strandat 26.734 kb on + strandat 26.735 kb on - strandat 26.820 kb on + strand, within EX31_RS16560at 26.822 kb on + strand, within EX31_RS16560at 26.879 kb on + strand, within EX31_RS16560at 26.880 kb on - strand, within EX31_RS16560at 26.880 kb on - strand, within EX31_RS16560at 26.881 kb on + strand, within EX31_RS16560at 26.881 kb on + strand, within EX31_RS16560at 26.903 kb on + strand, within EX31_RS16560at 26.929 kb on + strand, within EX31_RS16560at 26.929 kb on + strand, within EX31_RS16560at 26.934 kb on + strand, within EX31_RS16560at 26.934 kb on + strand, within EX31_RS16560at 26.952 kb on + strand, within EX31_RS16560at 26.952 kb on + strand, within EX31_RS16560at 26.952 kb on + strand, within EX31_RS16560at 26.953 kb on - strand, within EX31_RS16560at 26.971 kb on + strand, within EX31_RS16560at 27.131 kb on + strand, within EX31_RS16560at 27.135 kb on - strand, within EX31_RS16560at 27.135 kb on - strand, within EX31_RS16560at 27.165 kb on + strand, within EX31_RS16560at 27.166 kb on - strand, within EX31_RS16560at 27.188 kb on + strand, within EX31_RS16560at 27.189 kb on - strand, within EX31_RS16560at 27.234 kb on - strand, within EX31_RS16560at 27.234 kb on - strand, within EX31_RS16560at 27.234 kb on - strand, within EX31_RS16560at 27.275 kb on + strand, within EX31_RS16560at 27.276 kb on - strand, within EX31_RS16560

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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25,015 + EX31_RS16550 0.29 +1.0
25,016 - EX31_RS16550 0.29 -0.2
25,026 + EX31_RS16550 0.30 +0.7
25,026 + EX31_RS16550 0.30 +1.7
25,026 + EX31_RS16550 0.30 +1.8
25,026 + EX31_RS16550 0.30 +0.0
25,026 + EX31_RS16550 0.30 +1.1
25,026 + EX31_RS16550 0.30 +1.1
25,026 + EX31_RS16550 0.30 +1.5
25,027 - EX31_RS16550 0.30 -0.2
25,027 - EX31_RS16550 0.30 +0.0
25,027 - EX31_RS16550 0.30 +2.1
25,027 - EX31_RS16550 0.30 -0.3
25,102 + EX31_RS16550 0.36 -1.6
25,102 + EX31_RS16550 0.36 +0.6
25,103 - EX31_RS16550 0.36 +0.5
25,143 - EX31_RS16550 0.39 -0.2
25,161 + EX31_RS16550 0.40 +0.8
25,162 - EX31_RS16550 0.41 -0.6
25,162 - EX31_RS16550 0.41 +1.2
25,232 + EX31_RS16550 0.46 +0.7
25,233 - EX31_RS16550 0.46 +0.2
25,233 - EX31_RS16550 0.46 -0.5
25,233 - EX31_RS16550 0.46 +0.7
25,233 - EX31_RS16550 0.46 +1.9
25,233 - EX31_RS16550 0.46 +2.5
25,233 - EX31_RS16550 0.46 -1.7
25,233 - EX31_RS16550 0.46 +0.5
25,285 + EX31_RS16550 0.50 -1.1
25,286 - EX31_RS16550 0.50 -1.2
25,301 + EX31_RS16550 0.51 +2.1
25,301 + EX31_RS16550 0.51 -1.0
25,301 + EX31_RS16550 0.51 -0.7
25,302 - EX31_RS16550 0.51 -2.0
25,302 - EX31_RS16550 0.51 +0.1
25,310 + EX31_RS16550 0.52 +0.1
25,310 + EX31_RS16550 0.52 +2.1
25,334 + EX31_RS16550 0.54 -1.1
25,334 + EX31_RS16550 0.54 +1.2
25,334 + EX31_RS16550 0.54 +0.5
25,334 + EX31_RS16550 0.54 +0.6
25,334 + EX31_RS16550 0.54 -0.2
25,334 + EX31_RS16550 0.54 -0.3
25,334 + EX31_RS16550 0.54 +0.3
25,334 + EX31_RS16550 0.54 +0.7
25,334 + EX31_RS16550 0.54 +1.6
25,334 + EX31_RS16550 0.54 -1.7
25,334 + EX31_RS16550 0.54 +1.4
25,334 + EX31_RS16550 0.54 -0.9
25,334 + EX31_RS16550 0.54 -0.4
25,334 + EX31_RS16550 0.54 -0.7
25,334 + EX31_RS16550 0.54 +0.0
25,334 + EX31_RS16550 0.54 +2.1
25,334 + EX31_RS16550 0.54 -0.5
25,335 - EX31_RS16550 0.54 +0.2
25,335 - EX31_RS16550 0.54 +2.1
25,335 - EX31_RS16550 0.54 +0.5
25,335 - EX31_RS16550 0.54 -0.2
25,335 - EX31_RS16550 0.54 +0.5
25,335 - EX31_RS16550 0.54 +0.1
25,335 - EX31_RS16550 0.54 -0.3
25,335 - EX31_RS16550 0.54 +1.0
25,335 - EX31_RS16550 0.54 +1.5
25,337 + EX31_RS16550 0.54 -0.7
25,338 - EX31_RS16550 0.54 -0.6
25,338 - EX31_RS16550 0.54 +0.0
25,340 + EX31_RS16550 0.54 +0.1
25,340 + EX31_RS16550 0.54 -1.4
25,340 + EX31_RS16550 0.54 -0.3
25,340 + EX31_RS16550 0.54 +1.5
25,340 + EX31_RS16550 0.54 -0.0
25,340 + EX31_RS16550 0.54 +1.2
25,340 + EX31_RS16550 0.54 +2.3
25,340 + EX31_RS16550 0.54 +1.1
25,341 - EX31_RS16550 0.54 -0.6
25,341 - EX31_RS16550 0.54 +0.5
25,353 + EX31_RS16550 0.55 -0.0
25,354 - EX31_RS16550 0.55 -0.7
25,354 - EX31_RS16550 0.55 +0.3
25,366 + EX31_RS16550 0.56 -0.2
25,367 - EX31_RS16550 0.56 -0.8
25,367 - EX31_RS16550 0.56 -0.4
25,367 - EX31_RS16550 0.56 -2.1
25,449 + EX31_RS16550 0.63 -0.2
25,449 + EX31_RS16550 0.63 +0.8
25,449 + EX31_RS16550 0.63 -0.6
25,449 + EX31_RS16550 0.63 -0.2
25,449 + EX31_RS16550 0.63 +1.0
25,449 + EX31_RS16550 0.63 +0.0
25,449 + EX31_RS16550 0.63 -1.3
25,449 + EX31_RS16550 0.63 -1.2
25,449 + EX31_RS16550 0.63 +0.5
25,449 + EX31_RS16550 0.63 -0.9
25,450 - EX31_RS16550 0.63 -0.3
25,450 - EX31_RS16550 0.63 +0.9
25,450 - EX31_RS16550 0.63 +1.1
25,450 - EX31_RS16550 0.63 +0.6
25,450 - EX31_RS16550 0.63 +0.1
25,450 - EX31_RS16550 0.63 +0.5
25,450 - EX31_RS16550 0.63 -0.5
25,450 - EX31_RS16550 0.63 -1.7
25,451 + EX31_RS16550 0.63 +2.1
25,451 + EX31_RS16550 0.63 -0.2
25,451 + EX31_RS16550 0.63 -1.3
25,452 - EX31_RS16550 0.63 +0.8
25,452 - EX31_RS16550 0.63 +0.8
25,452 - EX31_RS16550 0.63 -0.2
25,452 - EX31_RS16550 0.63 +0.5
25,554 + EX31_RS16550 0.71 -0.0
25,620 + EX31_RS16550 0.76 -1.3
25,620 + EX31_RS16550 0.76 -0.9
25,621 - EX31_RS16550 0.76 +1.4
25,621 - EX31_RS16550 0.76 +0.3
25,638 + EX31_RS16550 0.77 +0.2
25,638 + EX31_RS16550 0.77 +0.0
25,638 + EX31_RS16550 0.77 -0.3
25,638 + EX31_RS16550 0.77 +0.2
25,638 + EX31_RS16550 0.77 -2.0
25,638 + EX31_RS16550 0.77 +0.1
25,638 + EX31_RS16550 0.77 +1.0
25,638 + EX31_RS16550 0.77 +0.8
25,638 + EX31_RS16550 0.77 +1.4
25,638 + EX31_RS16550 0.77 +1.0
25,638 + EX31_RS16550 0.77 +0.3
25,638 + EX31_RS16550 0.77 -0.6
25,638 + EX31_RS16550 0.77 -0.6
25,638 + EX31_RS16550 0.77 -0.9
25,639 - EX31_RS16550 0.77 -0.1
25,639 - EX31_RS16550 0.77 +1.2
25,639 - EX31_RS16550 0.77 -0.0
25,639 - EX31_RS16550 0.77 +2.1
25,643 + EX31_RS16550 0.78 +0.3
25,643 + EX31_RS16550 0.78 -1.7
25,644 - EX31_RS16550 0.78 +0.5
25,657 + EX31_RS16550 0.79 +0.1
25,658 - EX31_RS16550 0.79 +2.5
25,658 - EX31_RS16550 0.79 -0.1
25,659 + EX31_RS16550 0.79 +0.2
25,659 + EX31_RS16550 0.79 -0.5
25,659 + EX31_RS16550 0.79 -0.2
25,659 + EX31_RS16550 0.79 -1.0
25,660 - EX31_RS16550 0.79 +0.5
25,660 - EX31_RS16550 0.79 -0.6
25,660 - EX31_RS16550 0.79 +0.9
25,660 - EX31_RS16550 0.79 -0.5
25,660 - EX31_RS16550 0.79 +2.1
25,660 - EX31_RS16550 0.79 +0.3
25,660 - EX31_RS16550 0.79 +0.5
25,660 - EX31_RS16550 0.79 +0.6
25,685 - EX31_RS16550 0.81 -0.1
25,700 + EX31_RS16550 0.82 +1.0
25,700 + EX31_RS16550 0.82 -2.2
25,700 + EX31_RS16550 0.82 +0.3
25,701 - EX31_RS16550 0.82 -0.2
25,701 - EX31_RS16550 0.82 -0.4
25,714 - EX31_RS16550 0.83 -1.0
25,748 - EX31_RS16550 0.86 -0.1
25,759 + EX31_RS16550 0.87 -1.0
25,790 - EX31_RS16550 0.89 -1.0
25,813 + +0.3
25,814 - +0.4
25,855 + +0.8
25,934 - +1.5
25,937 - +0.0
25,937 - -0.1
25,949 + +0.2
25,954 + +0.6
26,176 - EX31_RS16555 0.69 -2.7
26,220 + EX31_RS16555 0.82 +0.4
26,221 - EX31_RS16555 0.83 -0.7
26,244 + EX31_RS16555 0.90 -0.7
26,293 + +0.5
26,300 - +0.0
26,300 - +2.1
26,306 + -1.0
26,337 + +0.4
26,337 + +0.6
26,619 - +1.6
26,625 + -0.6
26,660 + -0.9
26,660 + +1.1
26,661 - -1.5
26,672 + -1.4
26,673 - -0.6
26,694 - -0.2
26,694 - -0.7
26,713 + +1.1
26,729 - +1.3
26,734 + +0.3
26,735 - -0.5
26,820 + EX31_RS16560 0.11 +0.6
26,822 + EX31_RS16560 0.11 +1.1
26,879 + EX31_RS16560 0.18 -1.5
26,880 - EX31_RS16560 0.19 +1.5
26,880 - EX31_RS16560 0.19 -1.0
26,881 + EX31_RS16560 0.19 -0.5
26,881 + EX31_RS16560 0.19 -0.0
26,903 + EX31_RS16560 0.22 +0.7
26,929 + EX31_RS16560 0.25 +0.1
26,929 + EX31_RS16560 0.25 -0.3
26,934 + EX31_RS16560 0.26 -0.1
26,934 + EX31_RS16560 0.26 -0.6
26,952 + EX31_RS16560 0.28 +0.8
26,952 + EX31_RS16560 0.28 +0.0
26,952 + EX31_RS16560 0.28 -1.4
26,953 - EX31_RS16560 0.28 -0.2
26,971 + EX31_RS16560 0.30 -0.5
27,131 + EX31_RS16560 0.51 +0.7
27,135 - EX31_RS16560 0.52 +0.1
27,135 - EX31_RS16560 0.52 +0.1
27,165 + EX31_RS16560 0.55 +0.3
27,166 - EX31_RS16560 0.56 +0.4
27,188 + EX31_RS16560 0.58 +0.5
27,189 - EX31_RS16560 0.59 -0.4
27,234 - EX31_RS16560 0.64 +1.1
27,234 - EX31_RS16560 0.64 +3.7
27,234 - EX31_RS16560 0.64 +1.1
27,275 + EX31_RS16560 0.70 +1.5
27,276 - EX31_RS16560 0.70 +0.3

Or see this region's nucleotide sequence