Strain Fitness in Rahnella sp. WP5 around EX31_RS12580

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12575 and EX31_RS12580 overlap by 4 nucleotidesEX31_RS12580 and EX31_RS12585 overlap by 19 nucleotidesEX31_RS12585 and EX31_RS12590 are separated by 4 nucleotides EX31_RS12575: EX31_RS12575 - Flp pilus assembly complex ATPase component, at 186,822 to 188,351 _RS12575 EX31_RS12580: EX31_RS12580 - hypothetical protein, at 188,348 to 188,851 _RS12580 EX31_RS12585: EX31_RS12585 - hypothetical protein, at 188,833 to 189,681 _RS12585 EX31_RS12590: EX31_RS12590 - hypothetical protein, at 189,686 to 190,243 _RS12590 Position (kb) 188 189Strain fitness (log2 ratio) -2 -1 0 1 2 3at 187.367 kb on + strand, within EX31_RS12575at 187.367 kb on + strand, within EX31_RS12575at 187.367 kb on + strand, within EX31_RS12575at 187.368 kb on - strand, within EX31_RS12575at 187.368 kb on - strand, within EX31_RS12575at 187.368 kb on - strand, within EX31_RS12575at 187.368 kb on - strand, within EX31_RS12575at 187.485 kb on + strand, within EX31_RS12575at 187.485 kb on + strand, within EX31_RS12575at 187.615 kb on + strand, within EX31_RS12575at 187.616 kb on - strand, within EX31_RS12575at 187.656 kb on + strand, within EX31_RS12575at 187.656 kb on + strand, within EX31_RS12575at 187.657 kb on - strand, within EX31_RS12575at 187.671 kb on + strand, within EX31_RS12575at 187.673 kb on + strand, within EX31_RS12575at 187.674 kb on - strand, within EX31_RS12575at 187.674 kb on - strand, within EX31_RS12575at 187.683 kb on - strand, within EX31_RS12575at 187.707 kb on - strand, within EX31_RS12575at 187.707 kb on - strand, within EX31_RS12575at 187.727 kb on + strand, within EX31_RS12575at 187.727 kb on + strand, within EX31_RS12575at 187.727 kb on + strand, within EX31_RS12575at 187.727 kb on + strand, within EX31_RS12575at 187.727 kb on + strand, within EX31_RS12575at 187.727 kb on + strand, within EX31_RS12575at 187.728 kb on - strand, within EX31_RS12575at 187.728 kb on - strand, within EX31_RS12575at 187.728 kb on - strand, within EX31_RS12575at 187.731 kb on + strand, within EX31_RS12575at 187.731 kb on + strand, within EX31_RS12575at 187.731 kb on + strand, within EX31_RS12575at 187.731 kb on + strand, within EX31_RS12575at 187.732 kb on - strand, within EX31_RS12575at 187.732 kb on - strand, within EX31_RS12575at 187.732 kb on - strand, within EX31_RS12575at 187.734 kb on + strand, within EX31_RS12575at 187.734 kb on + strand, within EX31_RS12575at 187.734 kb on + strand, within EX31_RS12575at 187.735 kb on - strand, within EX31_RS12575at 187.735 kb on - strand, within EX31_RS12575at 187.735 kb on - strand, within EX31_RS12575at 187.735 kb on - strand, within EX31_RS12575at 187.735 kb on - strand, within EX31_RS12575at 187.735 kb on - strand, within EX31_RS12575at 187.735 kb on - strand, within EX31_RS12575at 187.801 kb on - strand, within EX31_RS12575at 187.814 kb on + strand, within EX31_RS12575at 187.817 kb on - strand, within EX31_RS12575at 187.823 kb on + strand, within EX31_RS12575at 187.824 kb on - strand, within EX31_RS12575at 187.841 kb on + strand, within EX31_RS12575at 187.841 kb on + strand, within EX31_RS12575at 187.841 kb on + strand, within EX31_RS12575at 187.842 kb on - strand, within EX31_RS12575at 187.842 kb on - strand, within EX31_RS12575at 187.842 kb on - strand, within EX31_RS12575at 187.845 kb on - strand, within EX31_RS12575at 187.845 kb on - strand, within EX31_RS12575at 187.845 kb on - strand, within EX31_RS12575at 187.859 kb on + strand, within EX31_RS12575at 187.878 kb on + strand, within EX31_RS12575at 187.878 kb on + strand, within EX31_RS12575at 187.878 kb on + strand, within EX31_RS12575at 187.878 kb on + strand, within EX31_RS12575at 187.879 kb on - strand, within EX31_RS12575at 187.879 kb on - strand, within EX31_RS12575at 187.879 kb on - strand, within EX31_RS12575at 187.879 kb on - strand, within EX31_RS12575at 187.879 kb on - strand, within EX31_RS12575at 187.879 kb on - strand, within EX31_RS12575at 187.885 kb on + strand, within EX31_RS12575at 187.885 kb on + strand, within EX31_RS12575at 187.886 kb on - strand, within EX31_RS12575at 187.886 kb on - strand, within EX31_RS12575at 187.886 kb on - strand, within EX31_RS12575at 187.886 kb on - strand, within EX31_RS12575at 187.886 kb on - strand, within EX31_RS12575at 187.897 kb on - strand, within EX31_RS12575at 187.897 kb on - strand, within EX31_RS12575at 187.938 kb on + strand, within EX31_RS12575at 187.938 kb on + strand, within EX31_RS12575at 187.953 kb on + strand, within EX31_RS12575at 187.953 kb on + strand, within EX31_RS12575at 187.954 kb on - strand, within EX31_RS12575at 187.954 kb on - strand, within EX31_RS12575at 187.979 kb on + strand, within EX31_RS12575at 187.994 kb on + strand, within EX31_RS12575at 187.994 kb on + strand, within EX31_RS12575at 187.994 kb on + strand, within EX31_RS12575at 187.995 kb on - strand, within EX31_RS12575at 187.995 kb on - strand, within EX31_RS12575at 188.034 kb on + strand, within EX31_RS12575at 188.063 kb on + strand, within EX31_RS12575at 188.063 kb on + strand, within EX31_RS12575at 188.063 kb on + strand, within EX31_RS12575at 188.111 kb on - strand, within EX31_RS12575at 188.122 kb on + strand, within EX31_RS12575at 188.122 kb on + strand, within EX31_RS12575at 188.204 kb on + strandat 188.204 kb on + strandat 188.204 kb on + strandat 188.204 kb on + strandat 188.205 kb on - strandat 188.242 kb on + strandat 188.243 kb on - strandat 188.243 kb on - strandat 188.313 kb on + strandat 188.327 kb on + strandat 188.327 kb on + strandat 188.327 kb on + strandat 188.328 kb on - strandat 188.334 kb on + strandat 188.335 kb on - strandat 188.406 kb on + strand, within EX31_RS12580at 188.407 kb on - strand, within EX31_RS12580at 188.407 kb on - strand, within EX31_RS12580at 188.451 kb on - strand, within EX31_RS12580at 188.513 kb on + strand, within EX31_RS12580at 188.513 kb on + strand, within EX31_RS12580at 188.551 kb on + strand, within EX31_RS12580at 188.551 kb on + strand, within EX31_RS12580at 188.552 kb on - strand, within EX31_RS12580at 188.552 kb on - strand, within EX31_RS12580at 188.560 kb on + strand, within EX31_RS12580at 188.627 kb on + strand, within EX31_RS12580at 188.653 kb on + strand, within EX31_RS12580at 188.653 kb on + strand, within EX31_RS12580at 188.653 kb on + strand, within EX31_RS12580at 188.695 kb on + strand, within EX31_RS12580at 188.695 kb on + strand, within EX31_RS12580at 188.696 kb on - strand, within EX31_RS12580at 188.728 kb on + strand, within EX31_RS12580at 188.729 kb on - strand, within EX31_RS12580at 188.729 kb on - strand, within EX31_RS12580at 188.729 kb on - strand, within EX31_RS12580at 188.729 kb on - strand, within EX31_RS12580at 188.729 kb on - strand, within EX31_RS12580at 188.729 kb on - strand, within EX31_RS12580at 188.780 kb on - strand, within EX31_RS12580at 188.948 kb on + strand, within EX31_RS12585at 188.948 kb on + strand, within EX31_RS12585at 188.949 kb on - strand, within EX31_RS12585at 188.953 kb on + strand, within EX31_RS12585at 188.954 kb on - strand, within EX31_RS12585at 188.954 kb on - strand, within EX31_RS12585at 188.959 kb on + strand, within EX31_RS12585at 189.010 kb on - strand, within EX31_RS12585at 189.049 kb on - strand, within EX31_RS12585at 189.143 kb on - strand, within EX31_RS12585at 189.470 kb on + strand, within EX31_RS12585at 189.473 kb on + strand, within EX31_RS12585at 189.473 kb on + strand, within EX31_RS12585at 189.555 kb on - strand, within EX31_RS12585at 189.555 kb on - strand, within EX31_RS12585at 189.560 kb on + strand, within EX31_RS12585at 189.560 kb on + strand, within EX31_RS12585at 189.560 kb on + strand, within EX31_RS12585at 189.561 kb on - strand, within EX31_RS12585at 189.566 kb on + strand, within EX31_RS12585at 189.676 kb on + strandat 189.705 kb on + strandat 189.821 kb on - strand, within EX31_RS12590

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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187,367 + EX31_RS12575 0.36 +0.5
187,367 + EX31_RS12575 0.36 -0.3
187,367 + EX31_RS12575 0.36 +0.5
187,368 - EX31_RS12575 0.36 -0.9
187,368 - EX31_RS12575 0.36 -0.7
187,368 - EX31_RS12575 0.36 +0.9
187,368 - EX31_RS12575 0.36 +0.4
187,485 + EX31_RS12575 0.43 -2.2
187,485 + EX31_RS12575 0.43 +0.4
187,615 + EX31_RS12575 0.52 +0.1
187,616 - EX31_RS12575 0.52 +1.1
187,656 + EX31_RS12575 0.55 +0.8
187,656 + EX31_RS12575 0.55 -0.5
187,657 - EX31_RS12575 0.55 -0.1
187,671 + EX31_RS12575 0.55 +0.5
187,673 + EX31_RS12575 0.56 +2.3
187,674 - EX31_RS12575 0.56 -0.2
187,674 - EX31_RS12575 0.56 +1.3
187,683 - EX31_RS12575 0.56 +0.7
187,707 - EX31_RS12575 0.58 -1.3
187,707 - EX31_RS12575 0.58 +0.9
187,727 + EX31_RS12575 0.59 +0.1
187,727 + EX31_RS12575 0.59 +0.4
187,727 + EX31_RS12575 0.59 -0.0
187,727 + EX31_RS12575 0.59 +0.6
187,727 + EX31_RS12575 0.59 +1.0
187,727 + EX31_RS12575 0.59 +0.1
187,728 - EX31_RS12575 0.59 +0.1
187,728 - EX31_RS12575 0.59 +0.5
187,728 - EX31_RS12575 0.59 +2.9
187,731 + EX31_RS12575 0.59 +0.3
187,731 + EX31_RS12575 0.59 -1.0
187,731 + EX31_RS12575 0.59 -0.4
187,731 + EX31_RS12575 0.59 +1.2
187,732 - EX31_RS12575 0.59 +0.1
187,732 - EX31_RS12575 0.59 -0.2
187,732 - EX31_RS12575 0.59 +0.8
187,734 + EX31_RS12575 0.60 +0.2
187,734 + EX31_RS12575 0.60 -0.5
187,734 + EX31_RS12575 0.60 -0.3
187,735 - EX31_RS12575 0.60 +1.3
187,735 - EX31_RS12575 0.60 -0.4
187,735 - EX31_RS12575 0.60 +0.3
187,735 - EX31_RS12575 0.60 +0.8
187,735 - EX31_RS12575 0.60 +1.3
187,735 - EX31_RS12575 0.60 +0.6
187,735 - EX31_RS12575 0.60 -0.1
187,801 - EX31_RS12575 0.64 +1.1
187,814 + EX31_RS12575 0.65 +0.1
187,817 - EX31_RS12575 0.65 +0.3
187,823 + EX31_RS12575 0.65 +0.1
187,824 - EX31_RS12575 0.65 +0.1
187,841 + EX31_RS12575 0.67 +0.3
187,841 + EX31_RS12575 0.67 +0.9
187,841 + EX31_RS12575 0.67 +0.8
187,842 - EX31_RS12575 0.67 +0.6
187,842 - EX31_RS12575 0.67 -0.8
187,842 - EX31_RS12575 0.67 +1.3
187,845 - EX31_RS12575 0.67 +1.1
187,845 - EX31_RS12575 0.67 +0.9
187,845 - EX31_RS12575 0.67 -0.6
187,859 + EX31_RS12575 0.68 +0.4
187,878 + EX31_RS12575 0.69 +1.6
187,878 + EX31_RS12575 0.69 +0.9
187,878 + EX31_RS12575 0.69 +0.7
187,878 + EX31_RS12575 0.69 -0.7
187,879 - EX31_RS12575 0.69 -0.4
187,879 - EX31_RS12575 0.69 -0.1
187,879 - EX31_RS12575 0.69 -0.3
187,879 - EX31_RS12575 0.69 -0.2
187,879 - EX31_RS12575 0.69 +1.2
187,879 - EX31_RS12575 0.69 +1.3
187,885 + EX31_RS12575 0.69 +0.4
187,885 + EX31_RS12575 0.69 -1.9
187,886 - EX31_RS12575 0.70 +0.2
187,886 - EX31_RS12575 0.70 +0.7
187,886 - EX31_RS12575 0.70 +1.8
187,886 - EX31_RS12575 0.70 +0.2
187,886 - EX31_RS12575 0.70 -0.7
187,897 - EX31_RS12575 0.70 -0.2
187,897 - EX31_RS12575 0.70 -0.3
187,938 + EX31_RS12575 0.73 -0.4
187,938 + EX31_RS12575 0.73 +1.3
187,953 + EX31_RS12575 0.74 -1.9
187,953 + EX31_RS12575 0.74 +0.1
187,954 - EX31_RS12575 0.74 +1.1
187,954 - EX31_RS12575 0.74 +0.8
187,979 + EX31_RS12575 0.76 +1.8
187,994 + EX31_RS12575 0.77 -1.0
187,994 + EX31_RS12575 0.77 +0.6
187,994 + EX31_RS12575 0.77 -0.3
187,995 - EX31_RS12575 0.77 +0.8
187,995 - EX31_RS12575 0.77 -0.0
188,034 + EX31_RS12575 0.79 +0.1
188,063 + EX31_RS12575 0.81 +0.1
188,063 + EX31_RS12575 0.81 +0.4
188,063 + EX31_RS12575 0.81 -0.1
188,111 - EX31_RS12575 0.84 -0.0
188,122 + EX31_RS12575 0.85 -0.7
188,122 + EX31_RS12575 0.85 +0.3
188,204 + +1.1
188,204 + +0.3
188,204 + -0.1
188,204 + +1.6
188,205 - -0.6
188,242 + +1.8
188,243 - +0.3
188,243 - +1.6
188,313 + +0.4
188,327 + +0.5
188,327 + -1.4
188,327 + +1.4
188,328 - +1.4
188,334 + +0.9
188,335 - +0.7
188,406 + EX31_RS12580 0.12 +0.1
188,407 - EX31_RS12580 0.12 +0.6
188,407 - EX31_RS12580 0.12 +0.1
188,451 - EX31_RS12580 0.20 +0.7
188,513 + EX31_RS12580 0.33 +3.3
188,513 + EX31_RS12580 0.33 +0.9
188,551 + EX31_RS12580 0.40 +0.2
188,551 + EX31_RS12580 0.40 +0.8
188,552 - EX31_RS12580 0.40 +0.3
188,552 - EX31_RS12580 0.40 +1.3
188,560 + EX31_RS12580 0.42 +0.1
188,627 + EX31_RS12580 0.55 -0.1
188,653 + EX31_RS12580 0.61 +0.4
188,653 + EX31_RS12580 0.61 +1.2
188,653 + EX31_RS12580 0.61 -0.3
188,695 + EX31_RS12580 0.69 -0.1
188,695 + EX31_RS12580 0.69 +0.3
188,696 - EX31_RS12580 0.69 +0.1
188,728 + EX31_RS12580 0.75 +2.2
188,729 - EX31_RS12580 0.76 -0.1
188,729 - EX31_RS12580 0.76 +0.1
188,729 - EX31_RS12580 0.76 +0.4
188,729 - EX31_RS12580 0.76 -1.6
188,729 - EX31_RS12580 0.76 -0.8
188,729 - EX31_RS12580 0.76 -2.3
188,780 - EX31_RS12580 0.86 +2.1
188,948 + EX31_RS12585 0.14 -0.2
188,948 + EX31_RS12585 0.14 -0.4
188,949 - EX31_RS12585 0.14 +0.2
188,953 + EX31_RS12585 0.14 -0.0
188,954 - EX31_RS12585 0.14 -0.5
188,954 - EX31_RS12585 0.14 -1.6
188,959 + EX31_RS12585 0.15 -1.7
189,010 - EX31_RS12585 0.21 +0.6
189,049 - EX31_RS12585 0.25 -0.4
189,143 - EX31_RS12585 0.37 +0.4
189,470 + EX31_RS12585 0.75 -0.7
189,473 + EX31_RS12585 0.75 +1.1
189,473 + EX31_RS12585 0.75 +0.8
189,555 - EX31_RS12585 0.85 +0.1
189,555 - EX31_RS12585 0.85 -0.1
189,560 + EX31_RS12585 0.86 +0.9
189,560 + EX31_RS12585 0.86 +0.2
189,560 + EX31_RS12585 0.86 -0.2
189,561 - EX31_RS12585 0.86 +1.8
189,566 + EX31_RS12585 0.86 +1.3
189,676 + +2.1
189,705 + -0.2
189,821 - EX31_RS12590 0.24 +2.3

Or see this region's nucleotide sequence