Experiment: Ammonium chloride (N); ShewMM media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09810 and EX31_RS09815 are separated by 58 nucleotides EX31_RS09815 and EX31_RS09820 are separated by 259 nucleotides
EX31_RS09810: EX31_RS09810 - autoinducer-2 kinase, at 168,436 to 169,986
_RS09810
EX31_RS09815: EX31_RS09815 - 2-keto-3-deoxygluconate transporter, at 170,045 to 171,043
_RS09815
EX31_RS09820: EX31_RS09820 - fructose-6-phosphate aldolase, at 171,303 to 171,968
_RS09820
Position (kb) 170
171
172 Strain fitness (log2 ratio) -1
0
1
2 at 169.082 kb on - strand, within EX31_RS09810 at 169.414 kb on + strand, within EX31_RS09810 at 169.414 kb on + strand, within EX31_RS09810 at 169.414 kb on + strand, within EX31_RS09810 at 169.415 kb on - strand, within EX31_RS09810 at 169.415 kb on - strand, within EX31_RS09810 at 169.415 kb on - strand, within EX31_RS09810 at 169.415 kb on - strand, within EX31_RS09810 at 169.507 kb on + strand, within EX31_RS09810 at 169.508 kb on - strand, within EX31_RS09810 at 169.583 kb on + strand, within EX31_RS09810 at 169.614 kb on + strand, within EX31_RS09810 at 169.614 kb on + strand, within EX31_RS09810 at 169.694 kb on + strand, within EX31_RS09810 at 169.694 kb on + strand, within EX31_RS09810 at 169.694 kb on + strand, within EX31_RS09810 at 169.695 kb on - strand, within EX31_RS09810 at 169.695 kb on - strand, within EX31_RS09810 at 169.804 kb on + strand, within EX31_RS09810 at 169.805 kb on - strand, within EX31_RS09810 at 169.856 kb on - strand at 169.885 kb on + strand at 169.918 kb on + strand at 169.919 kb on - strand at 170.448 kb on - strand, within EX31_RS09815 at 170.668 kb on - strand, within EX31_RS09815 at 170.827 kb on + strand, within EX31_RS09815 at 170.828 kb on - strand, within EX31_RS09815 at 170.896 kb on + strand, within EX31_RS09815 at 170.897 kb on - strand, within EX31_RS09815 at 170.897 kb on - strand, within EX31_RS09815 at 170.897 kb on - strand, within EX31_RS09815 at 170.900 kb on + strand, within EX31_RS09815 at 171.034 kb on + strand at 171.043 kb on + strand at 171.059 kb on + strand at 171.060 kb on - strand at 171.187 kb on + strand at 171.222 kb on - strand at 171.345 kb on - strand at 171.381 kb on - strand, within EX31_RS09820 at 171.381 kb on - strand, within EX31_RS09820 at 171.381 kb on - strand, within EX31_RS09820 at 171.388 kb on - strand, within EX31_RS09820 at 171.388 kb on - strand, within EX31_RS09820 at 171.577 kb on + strand, within EX31_RS09820 at 171.589 kb on + strand, within EX31_RS09820 at 171.589 kb on + strand, within EX31_RS09820 at 171.590 kb on - strand, within EX31_RS09820 at 171.660 kb on - strand, within EX31_RS09820 at 171.894 kb on - strand, within EX31_RS09820 at 171.931 kb on - strand at 171.958 kb on + strand at 172.015 kb on + strand at 172.015 kb on + strand at 172.016 kb on - strand at 172.016 kb on - strand at 172.016 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking remove 169,082 - EX31_RS09810 0.42 +1.0 169,414 + EX31_RS09810 0.63 -0.3 169,414 + EX31_RS09810 0.63 -0.6 169,414 + EX31_RS09810 0.63 -1.0 169,415 - EX31_RS09810 0.63 +2.1 169,415 - EX31_RS09810 0.63 +0.7 169,415 - EX31_RS09810 0.63 +0.1 169,415 - EX31_RS09810 0.63 +1.8 169,507 + EX31_RS09810 0.69 +0.1 169,508 - EX31_RS09810 0.69 +2.4 169,583 + EX31_RS09810 0.74 -0.4 169,614 + EX31_RS09810 0.76 +2.7 169,614 + EX31_RS09810 0.76 +2.1 169,694 + EX31_RS09810 0.81 +1.0 169,694 + EX31_RS09810 0.81 -1.7 169,694 + EX31_RS09810 0.81 -0.1 169,695 - EX31_RS09810 0.81 +0.1 169,695 - EX31_RS09810 0.81 +0.0 169,804 + EX31_RS09810 0.88 -0.3 169,805 - EX31_RS09810 0.88 -0.0 169,856 - +1.1 169,885 + -1.1 169,918 + +1.0 169,919 - +0.8 170,448 - EX31_RS09815 0.40 +0.3 170,668 - EX31_RS09815 0.62 -1.3 170,827 + EX31_RS09815 0.78 -0.8 170,828 - EX31_RS09815 0.78 +0.4 170,896 + EX31_RS09815 0.85 -0.4 170,897 - EX31_RS09815 0.85 -1.2 170,897 - EX31_RS09815 0.85 -0.7 170,897 - EX31_RS09815 0.85 +0.7 170,900 + EX31_RS09815 0.86 -1.6 171,034 + -0.0 171,043 + +0.9 171,059 + -0.6 171,060 - +0.2 171,187 + -1.1 171,222 - +1.4 171,345 - +2.4 171,381 - EX31_RS09820 0.12 -0.8 171,381 - EX31_RS09820 0.12 -0.3 171,381 - EX31_RS09820 0.12 -1.1 171,388 - EX31_RS09820 0.13 +0.1 171,388 - EX31_RS09820 0.13 -1.4 171,577 + EX31_RS09820 0.41 +0.5 171,589 + EX31_RS09820 0.43 +0.7 171,589 + EX31_RS09820 0.43 +1.7 171,590 - EX31_RS09820 0.43 -1.1 171,660 - EX31_RS09820 0.54 +0.4 171,894 - EX31_RS09820 0.89 +1.0 171,931 - +0.3 171,958 + +0.0 172,015 + +1.9 172,015 + +1.3 172,016 - +0.2 172,016 - -0.2 172,016 - -0.6
Or see this region's nucleotide sequence