Strain Fitness in Rahnella sp. WP5 around EX31_RS04975

Experiment: Ammonium chloride (N); ShewMM media; no shaking

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N); ShewMM media; no shaking
121,044	+		EX31_RS04970	0.25	-0.6
121,044	+		EX31_RS04970	0.25	-0.6
121,045	-		EX31_RS04970	0.25	+0.1
121,045	-		EX31_RS04970	0.25	+0.4
121,045	-		EX31_RS04970	0.25	-0.9
121,138	+		EX31_RS04970	0.33	-0.3
121,147	+		EX31_RS04970	0.34	+0.5
121,147	+		EX31_RS04970	0.34	-0.8
121,147	+		EX31_RS04970	0.34	-0.1
121,147	+		EX31_RS04970	0.34	+0.0
121,148	-		EX31_RS04970	0.34	+0.4
121,381	-		EX31_RS04970	0.56	+1.2
121,381	-		EX31_RS04970	0.56	+0.5
121,415	+		EX31_RS04970	0.59	-0.0
121,415	+		EX31_RS04970	0.59	-1.3
121,415	+		EX31_RS04970	0.59	-0.8
121,415	+		EX31_RS04970	0.59	-0.8
121,416	-		EX31_RS04970	0.60	+0.4
121,445	+		EX31_RS04970	0.62	+0.1
121,445	+		EX31_RS04970	0.62	+0.4
121,446	-		EX31_RS04970	0.62	+0.8
121,467	-		EX31_RS04970	0.64	-0.2
121,475	+		EX31_RS04970	0.65	+0.2
121,475	+		EX31_RS04970	0.65	-0.3
121,475	+		EX31_RS04970	0.65	-0.1
121,475	+		EX31_RS04970	0.65	-0.2
121,475	+		EX31_RS04970	0.65	+0.7
121,476	-		EX31_RS04970	0.65	-1.6
121,478	+		EX31_RS04970	0.65	-1.6
121,479	-		EX31_RS04970	0.65	-0.2
121,479	-		EX31_RS04970	0.65	+0.8
121,506	+		EX31_RS04970	0.68	+0.3
121,506	+		EX31_RS04970	0.68	-0.7
121,507	-		EX31_RS04970	0.68	+0.1
121,527	-		EX31_RS04970	0.70	+0.2
121,573	+		EX31_RS04970	0.74	+0.3
121,574	-		EX31_RS04970	0.74	-0.6
121,612	+		EX31_RS04970	0.78	+0.5
121,612	+		EX31_RS04970	0.78	-1.1
121,613	-		EX31_RS04970	0.78	+0.1
121,631	-		EX31_RS04970	0.80	+0.5
121,631	-		EX31_RS04970	0.80	+0.0
121,703	+		EX31_RS04970	0.86	-0.9
121,703	+		EX31_RS04970	0.86	-0.5
121,720	+		EX31_RS04970	0.88	-0.8
121,721	-		EX31_RS04970	0.88	-0.2
121,721	-		EX31_RS04970	0.88	+0.7
121,749	-				-0.6
121,749	-				-0.2
121,749	-				-0.0
121,760	-				+0.4
121,760	-				+0.5
121,760	-				+0.0
121,765	+				-0.5
121,765	+				-0.9
121,766	-				-1.5
121,766	-				-1.1
121,766	-				-0.1
121,766	-				+1.2
121,766	-				-1.5
121,766	-				-0.3
121,776	-				+0.4
121,776	-				-2.9
121,807	+				+1.4
121,807	+				-0.9
121,807	+				+0.7
121,807	+				+0.1
121,807	+				+0.2
121,807	+				-0.2
121,808	-				+0.3
121,842	+				+1.3
121,842	+				-1.2
121,842	+				+0.6
121,842	+				-1.2
121,843	-				-0.4
121,843	-				+0.1
121,843	-				+0.6
121,844	+				-0.2
121,845	-				-0.9
121,845	-				-1.5
121,845	-				+0.7
121,845	-				-0.4
121,845	-				+0.1
121,845	-				+0.3
121,849	+				-0.8
121,849	+				+0.1
121,849	+				+0.2
121,849	+				+0.1
121,849	+				-0.3
121,849	+				-0.1
121,849	+				+0.5
121,849	+				+0.4
121,849	+				+1.1
121,849	+				+1.0
121,849	+				-0.2
121,849	+				+1.4
121,849	+				-0.4
121,849	+				+0.1
121,849	+				+0.0
121,849	+				+0.5
121,849	+				-0.7
121,849	+				-0.5
121,849	+				+0.2
121,849	+				+0.3
121,849	+				-0.1
121,849	+				-0.2
121,849	+				+0.4
121,849	+				+1.4
121,849	+				-0.3
121,850	-				+1.1
121,850	-				+0.4
121,850	-				+0.1
121,850	-				-0.5
121,850	-				+0.7
121,850	-				-0.5
121,850	-				+0.6
121,850	-				-0.4
121,850	-				+0.5
121,850	-				-0.0
121,850	-				-0.3
121,850	-				-1.0
121,850	-				-0.2
121,850	-				-0.7
121,850	-				+0.7
121,850	-				+0.9
121,850	-				-1.0
121,854	+				-1.0
121,854	+				-0.5
121,854	+				+0.6
121,854	+				-0.8
121,854	+				+0.2
121,855	-				-0.8
121,855	-				+0.2
121,899	+				+0.7
121,899	+				+0.1
121,900	-				-0.4
121,921	-				+0.8
121,941	+				-1.0
121,988	-				-0.9
122,050	+		EX31_RS04975	0.12	-0.1
122,257	+		EX31_RS04975	0.39	-0.7
122,257	+		EX31_RS04975	0.39	-0.0
122,257	+		EX31_RS04975	0.39	-1.5
122,257	+		EX31_RS04975	0.39	-0.8
122,257	+		EX31_RS04975	0.39	-1.6
122,257	+		EX31_RS04975	0.39	-1.1
122,258	-		EX31_RS04975	0.39	-0.3
122,258	-		EX31_RS04975	0.39	-1.5
122,258	-		EX31_RS04975	0.39	-1.4
122,327	+		EX31_RS04975	0.48	-1.0
122,393	+		EX31_RS04975	0.57	-1.0
122,393	+		EX31_RS04975	0.57	-1.5
122,393	+		EX31_RS04975	0.57	+0.5
122,394	-		EX31_RS04975	0.57	+0.9
122,394	-		EX31_RS04975	0.57	-2.4
122,394	-		EX31_RS04975	0.57	-0.5
122,398	+		EX31_RS04975	0.58	-0.2
122,413	+		EX31_RS04975	0.60	-1.6
122,413	+		EX31_RS04975	0.60	-0.4
122,447	+		EX31_RS04975	0.64	-0.9
122,447	+		EX31_RS04975	0.64	-1.7
122,447	+		EX31_RS04975	0.64	-1.9
122,447	+		EX31_RS04975	0.64	+1.7
122,501	+		EX31_RS04975	0.71	-1.9
122,549	+		EX31_RS04975	0.78	-1.1
122,682	+				+0.1
122,682	+				-0.7
122,682	+				-1.3
122,682	+				-0.6
122,682	+				-0.1
122,682	+				-0.8
122,682	+				+0.2
122,682	+				-1.6
122,714	+				+0.7
122,729	+				+0.7
122,730	-				+0.6
122,744	+				-0.9
122,744	+				+0.1
122,744	+				+0.0
122,744	+				+0.6
122,744	+				+0.1
122,744	+				-1.0
122,745	-				+0.7
122,745	-				-0.1
122,756	+				+0.8
122,757	-				-0.1
122,757	-				-1.1
122,763	+				+0.3
122,763	+				-0.1
122,776	+				+0.6
122,776	+				-0.4
122,776	+				+0.2
122,777	-				+1.1
122,777	-				+0.1
122,784	+				+0.6
122,784	+				+0.1
122,784	+				-0.1
122,785	-				+0.3
122,785	-				-2.0
122,785	-				+0.3
122,785	-				+0.0
122,785	-				+0.7
122,996	+		EX31_RS04980	0.61	+0.8
122,997	-		EX31_RS04980	0.61	-1.4
122,997	-		EX31_RS04980	0.61	-2.0
122,997	-		EX31_RS04980	0.61	+1.2
122,997	-		EX31_RS04980	0.61	-0.6
123,059	+		EX31_RS04980	0.80	+0.4
123,130	+				-2.1
123,149	+				-0.2
123,149	+				+0.5
123,149	+				+0.2
123,149	+				+0.2
123,149	+				-0.4
123,149	+				-1.1
123,150	-				+0.1
123,150	-				+1.5
123,150	-				+1.6
123,150	-				+1.7
123,151	+				-0.2
123,151	+				-0.3
123,151	+				+0.4
123,151	+				+0.6
123,151	+				-0.5
123,151	+				-0.5
123,151	+				-0.4
123,152	-				+0.4
123,152	-				-0.0
123,152	-				+0.3
123,152	-				-0.7
123,152	-				+1.6
123,152	-				-0.4
123,158	+				-0.1
123,159	-				-0.3
123,159	-				-1.2
123,159	-				-1.9
123,160	+				+0.9
123,161	-				-0.3
123,196	-				+1.7
123,209	+				-0.4
123,209	+				+0.1
123,229	-				+0.6
123,229	-				-0.2
123,230	+				+0.3
123,230	+				-0.3
123,230	+				-0.4
123,230	+				-0.0
123,230	+				+0.4
123,230	+				-0.4
123,231	-				+0.3
123,242	-				+1.5
123,244	+				+0.2
123,245	-				-1.1
123,245	-				-0.2
123,256	+				-0.4
123,256	+				+0.3
123,256	+				-0.2
123,256	+				+0.7
123,256	+				+0.3
123,256	+				-1.9
123,256	+				+0.0
123,256	+				-0.7
123,256	+				-0.2
123,257	-				+0.4
123,257	-				-0.1
123,257	-				-1.4
123,257	-				-0.9
123,257	-				+0.3
123,300	+				-0.2
123,300	+				+0.0
123,300	+				+0.1
123,301	-				-0.1
123,301	-				+0.4
123,301	-				+0.5
123,360	+				+0.1
123,360	+				+1.0
123,360	+				+0.3
123,360	+				-0.6
123,360	+				+1.3
123,360	+				-0.3
123,360	+				-0.4
123,360	+				+1.3
123,360	+				-0.3
123,360	+				-0.7
123,360	+				-0.1
123,361	-				+2.3
123,361	-				-0.8
123,361	-				+0.2
123,361	-				+0.6
123,361	-				+2.2
123,361	-				-0.8
123,361	-				+1.0
123,361	-				+0.4
123,361	-				-0.1
123,361	-				+0.5
123,361	-				+0.2
123,361	-				-0.9
123,361	-				+0.1
123,437	-		EX31_RS04985	0.15	+0.3
123,438	+		EX31_RS04985	0.15	-1.0
123,438	+		EX31_RS04985	0.15	+0.9
123,438	+		EX31_RS04985	0.15	+0.6
123,438	+		EX31_RS04985	0.15	+0.8
123,438	+		EX31_RS04985	0.15	+0.3
123,438	+		EX31_RS04985	0.15	-0.2
123,438	+		EX31_RS04985	0.15	-1.9
123,438	+		EX31_RS04985	0.15	+0.2
123,438	+		EX31_RS04985	0.15	+0.4
123,438	+		EX31_RS04985	0.15	+0.2
123,438	+		EX31_RS04985	0.15	-0.5
123,438	+		EX31_RS04985	0.15	-0.0
123,439	-		EX31_RS04985	0.15	-0.6
123,439	-		EX31_RS04985	0.15	-1.5
123,439	-		EX31_RS04985	0.15	+0.4
123,439	-		EX31_RS04985	0.15	-0.5
123,439	-		EX31_RS04985	0.15	+0.8
123,439	-		EX31_RS04985	0.15	-0.2
123,439	-		EX31_RS04985	0.15	+0.7
123,439	-		EX31_RS04985	0.15	+0.7
123,439	-		EX31_RS04985	0.15	+0.1
123,442	+		EX31_RS04985	0.15	+0.7
123,442	+		EX31_RS04985	0.15	+0.2
123,443	-		EX31_RS04985	0.15	-0.2
123,443	-		EX31_RS04985	0.15	+0.5
123,607	+		EX31_RS04985	0.29	+0.1
123,607	+		EX31_RS04985	0.29	-1.3
123,607	+		EX31_RS04985	0.29	+0.4
123,608	-		EX31_RS04985	0.29	-0.8
123,608	-		EX31_RS04985	0.29	-0.5
123,633	+		EX31_RS04985	0.31	+2.0