Strain Fitness in Rahnella sp. WP5 around EX31_RS02825

Experiment: Ammonium chloride (N); ShewMM media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS02815 and EX31_RS02820 are separated by 12 nucleotidesEX31_RS02820 and EX31_RS02825 are separated by 16 nucleotidesEX31_RS02825 and EX31_RS02830 are separated by 94 nucleotides EX31_RS02815: EX31_RS02815 - MFS transporter, at 35,590 to 36,906 _RS02815 EX31_RS02820: EX31_RS02820 - YhcH/YjgK/YiaL family protein, at 36,919 to 37,572 _RS02820 EX31_RS02825: EX31_RS02825 - dihydrodipicolinate synthase family protein, at 37,589 to 38,518 _RS02825 EX31_RS02830: EX31_RS02830 - ribokinase, at 38,613 to 39,827 _RS02830 Position (kb) 37 38 39Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 36.759 kb on + strand, within EX31_RS02815at 36.765 kb on + strand, within EX31_RS02815at 36.765 kb on + strand, within EX31_RS02815at 36.766 kb on - strand, within EX31_RS02815at 36.766 kb on - strand, within EX31_RS02815at 36.766 kb on - strand, within EX31_RS02815at 36.789 kb on - strandat 36.808 kb on + strandat 36.865 kb on - strandat 36.877 kb on - strandat 36.909 kb on + strandat 36.910 kb on - strandat 36.934 kb on - strandat 36.938 kb on - strandat 36.987 kb on + strand, within EX31_RS02820at 36.987 kb on + strand, within EX31_RS02820at 37.008 kb on + strand, within EX31_RS02820at 37.083 kb on + strand, within EX31_RS02820at 37.338 kb on + strand, within EX31_RS02820at 37.338 kb on + strand, within EX31_RS02820at 37.338 kb on + strand, within EX31_RS02820at 37.339 kb on - strand, within EX31_RS02820at 37.340 kb on + strand, within EX31_RS02820at 37.341 kb on - strand, within EX31_RS02820at 37.341 kb on - strand, within EX31_RS02820at 37.356 kb on + strand, within EX31_RS02820at 37.356 kb on + strand, within EX31_RS02820at 37.408 kb on + strand, within EX31_RS02820at 37.408 kb on + strand, within EX31_RS02820at 37.408 kb on + strand, within EX31_RS02820at 37.409 kb on - strand, within EX31_RS02820at 37.409 kb on - strand, within EX31_RS02820at 37.409 kb on - strand, within EX31_RS02820at 37.409 kb on - strand, within EX31_RS02820at 37.409 kb on - strand, within EX31_RS02820at 37.409 kb on - strand, within EX31_RS02820at 37.423 kb on + strand, within EX31_RS02820at 37.435 kb on - strand, within EX31_RS02820at 37.435 kb on - strand, within EX31_RS02820at 37.435 kb on - strand, within EX31_RS02820at 37.439 kb on - strand, within EX31_RS02820at 37.439 kb on - strand, within EX31_RS02820at 37.439 kb on - strand, within EX31_RS02820at 37.472 kb on + strand, within EX31_RS02820at 37.473 kb on - strand, within EX31_RS02820at 37.508 kb on + strandat 37.508 kb on + strandat 37.508 kb on + strandat 37.509 kb on - strandat 37.509 kb on - strandat 37.533 kb on + strandat 37.534 kb on - strandat 37.581 kb on - strandat 37.590 kb on + strandat 37.590 kb on + strandat 37.590 kb on + strandat 37.591 kb on - strandat 37.591 kb on - strandat 37.592 kb on + strandat 37.593 kb on - strandat 37.593 kb on - strandat 37.735 kb on - strand, within EX31_RS02825at 37.735 kb on - strand, within EX31_RS02825at 37.735 kb on - strand, within EX31_RS02825at 37.839 kb on + strand, within EX31_RS02825at 37.840 kb on - strand, within EX31_RS02825at 37.840 kb on - strand, within EX31_RS02825at 37.851 kb on + strand, within EX31_RS02825at 37.851 kb on + strand, within EX31_RS02825at 37.851 kb on + strand, within EX31_RS02825at 37.852 kb on - strand, within EX31_RS02825at 37.852 kb on - strand, within EX31_RS02825at 37.852 kb on - strand, within EX31_RS02825at 37.853 kb on + strand, within EX31_RS02825at 37.853 kb on + strand, within EX31_RS02825at 37.853 kb on + strand, within EX31_RS02825at 37.854 kb on - strand, within EX31_RS02825at 37.854 kb on - strand, within EX31_RS02825at 37.854 kb on - strand, within EX31_RS02825at 37.854 kb on - strand, within EX31_RS02825at 37.894 kb on + strand, within EX31_RS02825at 37.939 kb on + strand, within EX31_RS02825at 37.939 kb on + strand, within EX31_RS02825at 37.940 kb on - strand, within EX31_RS02825at 37.957 kb on + strand, within EX31_RS02825at 37.957 kb on + strand, within EX31_RS02825at 38.018 kb on + strand, within EX31_RS02825at 38.019 kb on - strand, within EX31_RS02825at 38.019 kb on - strand, within EX31_RS02825at 38.019 kb on - strand, within EX31_RS02825at 38.046 kb on + strand, within EX31_RS02825at 38.046 kb on + strand, within EX31_RS02825at 38.047 kb on - strand, within EX31_RS02825at 38.047 kb on - strand, within EX31_RS02825at 38.047 kb on - strand, within EX31_RS02825at 38.047 kb on - strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.141 kb on - strand, within EX31_RS02825at 38.263 kb on + strand, within EX31_RS02825at 38.264 kb on - strand, within EX31_RS02825at 38.264 kb on - strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.403 kb on - strand, within EX31_RS02825at 38.403 kb on - strand, within EX31_RS02825at 38.418 kb on + strand, within EX31_RS02825at 38.419 kb on - strand, within EX31_RS02825at 38.419 kb on - strand, within EX31_RS02825at 38.507 kb on - strandat 38.512 kb on + strandat 38.512 kb on + strandat 38.512 kb on + strandat 38.512 kb on + strandat 38.513 kb on - strandat 38.513 kb on - strandat 38.602 kb on + strandat 38.602 kb on + strandat 38.614 kb on + strandat 38.708 kb on - strandat 38.744 kb on + strand, within EX31_RS02830at 38.745 kb on - strand, within EX31_RS02830at 38.790 kb on - strand, within EX31_RS02830at 38.834 kb on + strand, within EX31_RS02830at 38.870 kb on + strand, within EX31_RS02830at 38.871 kb on - strand, within EX31_RS02830at 38.873 kb on + strand, within EX31_RS02830at 38.873 kb on + strand, within EX31_RS02830at 38.873 kb on + strand, within EX31_RS02830at 38.904 kb on - strand, within EX31_RS02830at 38.931 kb on + strand, within EX31_RS02830at 38.979 kb on - strand, within EX31_RS02830at 38.979 kb on - strand, within EX31_RS02830at 38.979 kb on - strand, within EX31_RS02830at 38.979 kb on - strand, within EX31_RS02830at 38.984 kb on + strand, within EX31_RS02830at 38.984 kb on + strand, within EX31_RS02830at 38.984 kb on + strand, within EX31_RS02830at 38.984 kb on + strand, within EX31_RS02830at 38.985 kb on - strand, within EX31_RS02830at 38.985 kb on - strand, within EX31_RS02830at 38.985 kb on - strand, within EX31_RS02830at 38.985 kb on - strand, within EX31_RS02830at 38.988 kb on - strand, within EX31_RS02830at 38.998 kb on + strand, within EX31_RS02830at 38.998 kb on + strand, within EX31_RS02830at 38.998 kb on + strand, within EX31_RS02830at 38.998 kb on + strand, within EX31_RS02830at 38.998 kb on + strand, within EX31_RS02830at 38.999 kb on - strand, within EX31_RS02830at 38.999 kb on - strand, within EX31_RS02830at 38.999 kb on - strand, within EX31_RS02830at 38.999 kb on - strand, within EX31_RS02830at 39.024 kb on - strand, within EX31_RS02830at 39.199 kb on + strand, within EX31_RS02830at 39.200 kb on - strand, within EX31_RS02830at 39.200 kb on - strand, within EX31_RS02830at 39.238 kb on + strand, within EX31_RS02830at 39.238 kb on + strand, within EX31_RS02830at 39.238 kb on + strand, within EX31_RS02830at 39.238 kb on + strand, within EX31_RS02830at 39.238 kb on + strand, within EX31_RS02830at 39.239 kb on - strand, within EX31_RS02830at 39.239 kb on - strand, within EX31_RS02830at 39.239 kb on - strand, within EX31_RS02830at 39.239 kb on - strand, within EX31_RS02830at 39.239 kb on - strand, within EX31_RS02830at 39.239 kb on - strand, within EX31_RS02830at 39.277 kb on + strand, within EX31_RS02830at 39.277 kb on + strand, within EX31_RS02830at 39.319 kb on + strand, within EX31_RS02830at 39.319 kb on + strand, within EX31_RS02830at 39.320 kb on - strand, within EX31_RS02830at 39.320 kb on - strand, within EX31_RS02830at 39.320 kb on - strand, within EX31_RS02830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
remove
36,759 + EX31_RS02815 0.89 +0.5
36,765 + EX31_RS02815 0.89 -0.5
36,765 + EX31_RS02815 0.89 +0.3
36,766 - EX31_RS02815 0.89 +1.5
36,766 - EX31_RS02815 0.89 -0.0
36,766 - EX31_RS02815 0.89 -0.4
36,789 - +0.4
36,808 + +1.0
36,865 - -0.6
36,877 - -0.4
36,909 + +0.8
36,910 - -2.0
36,934 - +0.1
36,938 - -0.8
36,987 + EX31_RS02820 0.10 -1.4
36,987 + EX31_RS02820 0.10 -0.8
37,008 + EX31_RS02820 0.14 +0.0
37,083 + EX31_RS02820 0.25 +1.3
37,338 + EX31_RS02820 0.64 -3.0
37,338 + EX31_RS02820 0.64 +0.5
37,338 + EX31_RS02820 0.64 +0.3
37,339 - EX31_RS02820 0.64 +0.5
37,340 + EX31_RS02820 0.64 +0.8
37,341 - EX31_RS02820 0.65 -0.8
37,341 - EX31_RS02820 0.65 +0.3
37,356 + EX31_RS02820 0.67 -0.4
37,356 + EX31_RS02820 0.67 -1.7
37,408 + EX31_RS02820 0.75 +0.3
37,408 + EX31_RS02820 0.75 -1.0
37,408 + EX31_RS02820 0.75 +0.5
37,409 - EX31_RS02820 0.75 +0.5
37,409 - EX31_RS02820 0.75 +1.7
37,409 - EX31_RS02820 0.75 -1.2
37,409 - EX31_RS02820 0.75 +0.2
37,409 - EX31_RS02820 0.75 +0.0
37,409 - EX31_RS02820 0.75 -0.1
37,423 + EX31_RS02820 0.77 +0.7
37,435 - EX31_RS02820 0.79 +1.5
37,435 - EX31_RS02820 0.79 +0.3
37,435 - EX31_RS02820 0.79 +0.0
37,439 - EX31_RS02820 0.80 -0.4
37,439 - EX31_RS02820 0.80 +0.5
37,439 - EX31_RS02820 0.80 -0.3
37,472 + EX31_RS02820 0.85 +0.1
37,473 - EX31_RS02820 0.85 -0.7
37,508 + +0.0
37,508 + +0.8
37,508 + +0.3
37,509 - +1.4
37,509 - -1.0
37,533 + +1.0
37,534 - +0.3
37,581 - +1.3
37,590 + +1.2
37,590 + +0.2
37,590 + +0.5
37,591 - +0.8
37,591 - +0.8
37,592 + +0.2
37,593 - +0.8
37,593 - -0.9
37,735 - EX31_RS02825 0.16 +1.9
37,735 - EX31_RS02825 0.16 +0.1
37,735 - EX31_RS02825 0.16 +0.8
37,839 + EX31_RS02825 0.27 +0.0
37,840 - EX31_RS02825 0.27 +0.2
37,840 - EX31_RS02825 0.27 -0.4
37,851 + EX31_RS02825 0.28 +0.9
37,851 + EX31_RS02825 0.28 +1.0
37,851 + EX31_RS02825 0.28 -0.2
37,852 - EX31_RS02825 0.28 +0.0
37,852 - EX31_RS02825 0.28 +0.6
37,852 - EX31_RS02825 0.28 +0.4
37,853 + EX31_RS02825 0.28 +0.6
37,853 + EX31_RS02825 0.28 +0.1
37,853 + EX31_RS02825 0.28 -0.5
37,854 - EX31_RS02825 0.28 +0.4
37,854 - EX31_RS02825 0.28 -0.8
37,854 - EX31_RS02825 0.28 +0.6
37,854 - EX31_RS02825 0.28 +0.7
37,894 + EX31_RS02825 0.33 +0.8
37,939 + EX31_RS02825 0.38 -0.1
37,939 + EX31_RS02825 0.38 -1.4
37,940 - EX31_RS02825 0.38 -0.2
37,957 + EX31_RS02825 0.40 +0.9
37,957 + EX31_RS02825 0.40 +1.7
38,018 + EX31_RS02825 0.46 -0.4
38,019 - EX31_RS02825 0.46 +0.5
38,019 - EX31_RS02825 0.46 -1.6
38,019 - EX31_RS02825 0.46 -0.9
38,046 + EX31_RS02825 0.49 +0.5
38,046 + EX31_RS02825 0.49 -0.8
38,047 - EX31_RS02825 0.49 +0.2
38,047 - EX31_RS02825 0.49 +1.5
38,047 - EX31_RS02825 0.49 +0.3
38,047 - EX31_RS02825 0.49 +1.6
38,097 + EX31_RS02825 0.55 +0.6
38,097 + EX31_RS02825 0.55 -1.2
38,097 + EX31_RS02825 0.55 -0.2
38,097 + EX31_RS02825 0.55 -0.4
38,097 + EX31_RS02825 0.55 -0.1
38,097 + EX31_RS02825 0.55 -0.5
38,097 + EX31_RS02825 0.55 +1.0
38,097 + EX31_RS02825 0.55 -1.0
38,098 - EX31_RS02825 0.55 +1.2
38,098 - EX31_RS02825 0.55 -0.1
38,098 - EX31_RS02825 0.55 -0.5
38,098 - EX31_RS02825 0.55 -0.0
38,098 - EX31_RS02825 0.55 +0.0
38,098 - EX31_RS02825 0.55 +0.0
38,098 - EX31_RS02825 0.55 +0.2
38,098 - EX31_RS02825 0.55 -1.4
38,098 - EX31_RS02825 0.55 +0.2
38,098 - EX31_RS02825 0.55 +0.4
38,099 + EX31_RS02825 0.55 -2.0
38,099 + EX31_RS02825 0.55 -0.0
38,099 + EX31_RS02825 0.55 -0.2
38,099 + EX31_RS02825 0.55 +0.0
38,099 + EX31_RS02825 0.55 +0.8
38,099 + EX31_RS02825 0.55 +0.0
38,099 + EX31_RS02825 0.55 +0.6
38,099 + EX31_RS02825 0.55 +1.1
38,099 + EX31_RS02825 0.55 +1.4
38,099 + EX31_RS02825 0.55 -0.4
38,099 + EX31_RS02825 0.55 +0.3
38,100 - EX31_RS02825 0.55 +0.2
38,100 - EX31_RS02825 0.55 +0.8
38,100 - EX31_RS02825 0.55 +0.7
38,100 - EX31_RS02825 0.55 -0.1
38,100 - EX31_RS02825 0.55 +0.4
38,141 - EX31_RS02825 0.59 +0.5
38,263 + EX31_RS02825 0.72 +0.7
38,264 - EX31_RS02825 0.73 +1.0
38,264 - EX31_RS02825 0.73 +1.7
38,402 + EX31_RS02825 0.87 +0.8
38,402 + EX31_RS02825 0.87 -0.7
38,402 + EX31_RS02825 0.87 +0.9
38,402 + EX31_RS02825 0.87 +1.8
38,402 + EX31_RS02825 0.87 -1.0
38,402 + EX31_RS02825 0.87 -1.5
38,402 + EX31_RS02825 0.87 +0.2
38,402 + EX31_RS02825 0.87 -0.3
38,403 - EX31_RS02825 0.88 -1.4
38,403 - EX31_RS02825 0.88 -3.1
38,418 + EX31_RS02825 0.89 +0.7
38,419 - EX31_RS02825 0.89 +0.1
38,419 - EX31_RS02825 0.89 -0.3
38,507 - -0.1
38,512 + +1.8
38,512 + -0.1
38,512 + +1.1
38,512 + +0.3
38,513 - +1.0
38,513 - -1.4
38,602 + +0.9
38,602 + +1.5
38,614 + -0.1
38,708 - +0.2
38,744 + EX31_RS02830 0.11 +0.6
38,745 - EX31_RS02830 0.11 -0.5
38,790 - EX31_RS02830 0.15 +0.2
38,834 + EX31_RS02830 0.18 -1.0
38,870 + EX31_RS02830 0.21 -0.4
38,871 - EX31_RS02830 0.21 +0.5
38,873 + EX31_RS02830 0.21 +1.0
38,873 + EX31_RS02830 0.21 +0.6
38,873 + EX31_RS02830 0.21 -1.4
38,904 - EX31_RS02830 0.24 -0.6
38,931 + EX31_RS02830 0.26 +0.2
38,979 - EX31_RS02830 0.30 -2.5
38,979 - EX31_RS02830 0.30 -0.0
38,979 - EX31_RS02830 0.30 -1.4
38,979 - EX31_RS02830 0.30 +1.0
38,984 + EX31_RS02830 0.31 -0.5
38,984 + EX31_RS02830 0.31 -1.9
38,984 + EX31_RS02830 0.31 +0.6
38,984 + EX31_RS02830 0.31 -0.1
38,985 - EX31_RS02830 0.31 -0.0
38,985 - EX31_RS02830 0.31 -0.3
38,985 - EX31_RS02830 0.31 +0.7
38,985 - EX31_RS02830 0.31 +2.0
38,988 - EX31_RS02830 0.31 -0.3
38,998 + EX31_RS02830 0.32 +0.7
38,998 + EX31_RS02830 0.32 -0.3
38,998 + EX31_RS02830 0.32 +0.0
38,998 + EX31_RS02830 0.32 +0.7
38,998 + EX31_RS02830 0.32 -0.1
38,999 - EX31_RS02830 0.32 -0.7
38,999 - EX31_RS02830 0.32 -0.3
38,999 - EX31_RS02830 0.32 -1.0
38,999 - EX31_RS02830 0.32 +0.4
39,024 - EX31_RS02830 0.34 +0.1
39,199 + EX31_RS02830 0.48 +0.3
39,200 - EX31_RS02830 0.48 +0.6
39,200 - EX31_RS02830 0.48 -0.2
39,238 + EX31_RS02830 0.51 -0.4
39,238 + EX31_RS02830 0.51 +0.5
39,238 + EX31_RS02830 0.51 +0.6
39,238 + EX31_RS02830 0.51 -0.2
39,238 + EX31_RS02830 0.51 +0.2
39,239 - EX31_RS02830 0.52 +0.7
39,239 - EX31_RS02830 0.52 -0.2
39,239 - EX31_RS02830 0.52 +0.1
39,239 - EX31_RS02830 0.52 +0.0
39,239 - EX31_RS02830 0.52 -0.3
39,239 - EX31_RS02830 0.52 +0.1
39,277 + EX31_RS02830 0.55 +0.5
39,277 + EX31_RS02830 0.55 +0.7
39,319 + EX31_RS02830 0.58 -0.4
39,319 + EX31_RS02830 0.58 +0.2
39,320 - EX31_RS02830 0.58 -0.8
39,320 - EX31_RS02830 0.58 -0.4
39,320 - EX31_RS02830 0.58 +2.0

Or see this region's nucleotide sequence