Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4044

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4043 and Ac3H11_4044 are separated by 121 nucleotidesAc3H11_4044 and Ac3H11_4045 are separated by 18 nucleotides Ac3H11_4043 - TonB, C-terminal precursor, at 287,772 to 288,632 _4043 Ac3H11_4044 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 288,754 to 289,608 _4044 Ac3H11_4045 - Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-), at 289,627 to 290,361 _4045 Position (kb) 288 289 290Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 287.760 kb on + strandat 287.760 kb on + strandat 287.760 kb on + strandat 287.761 kb on - strandat 287.761 kb on - strandat 287.761 kb on - strandat 288.033 kb on + strand, within Ac3H11_4043at 288.034 kb on - strand, within Ac3H11_4043at 288.285 kb on + strand, within Ac3H11_4043at 288.286 kb on - strand, within Ac3H11_4043at 288.286 kb on - strand, within Ac3H11_4043at 288.286 kb on - strand, within Ac3H11_4043at 288.286 kb on - strand, within Ac3H11_4043at 288.286 kb on - strand, within Ac3H11_4043at 288.286 kb on - strand, within Ac3H11_4043at 288.286 kb on - strand, within Ac3H11_4043at 288.315 kb on + strand, within Ac3H11_4043at 288.315 kb on + strand, within Ac3H11_4043at 288.316 kb on - strand, within Ac3H11_4043at 288.316 kb on - strand, within Ac3H11_4043at 288.324 kb on + strand, within Ac3H11_4043at 288.324 kb on + strand, within Ac3H11_4043at 288.324 kb on + strand, within Ac3H11_4043at 288.324 kb on + strand, within Ac3H11_4043at 288.324 kb on + strand, within Ac3H11_4043at 288.324 kb on + strand, within Ac3H11_4043at 288.324 kb on + strand, within Ac3H11_4043at 288.324 kb on + strand, within Ac3H11_4043at 288.325 kb on - strand, within Ac3H11_4043at 288.325 kb on - strand, within Ac3H11_4043at 288.325 kb on - strand, within Ac3H11_4043at 288.325 kb on - strand, within Ac3H11_4043at 288.325 kb on - strand, within Ac3H11_4043at 288.327 kb on + strand, within Ac3H11_4043at 288.328 kb on - strand, within Ac3H11_4043at 288.400 kb on - strand, within Ac3H11_4043at 288.630 kb on + strandat 288.631 kb on - strandat 288.631 kb on - strandat 288.784 kb on + strandat 288.785 kb on - strandat 288.872 kb on - strand, within Ac3H11_4044at 288.872 kb on - strand, within Ac3H11_4044at 289.063 kb on + strand, within Ac3H11_4044at 289.064 kb on - strand, within Ac3H11_4044at 289.064 kb on - strand, within Ac3H11_4044at 289.064 kb on - strand, within Ac3H11_4044at 289.298 kb on + strand, within Ac3H11_4044at 289.423 kb on + strand, within Ac3H11_4044at 289.423 kb on + strand, within Ac3H11_4044at 289.423 kb on + strand, within Ac3H11_4044at 289.424 kb on - strand, within Ac3H11_4044at 289.424 kb on - strand, within Ac3H11_4044at 289.424 kb on - strand, within Ac3H11_4044at 289.435 kb on + strand, within Ac3H11_4044at 289.435 kb on + strand, within Ac3H11_4044at 289.435 kb on + strand, within Ac3H11_4044at 289.435 kb on + strand, within Ac3H11_4044at 289.435 kb on + strand, within Ac3H11_4044at 289.435 kb on + strand, within Ac3H11_4044at 289.436 kb on - strand, within Ac3H11_4044at 289.436 kb on - strand, within Ac3H11_4044at 289.436 kb on - strand, within Ac3H11_4044at 289.436 kb on - strand, within Ac3H11_4044at 289.436 kb on - strand, within Ac3H11_4044at 289.436 kb on - strand, within Ac3H11_4044at 289.436 kb on - strand, within Ac3H11_4044at 289.436 kb on - strand, within Ac3H11_4044at 289.436 kb on - strand, within Ac3H11_4044at 289.436 kb on - strand, within Ac3H11_4044at 289.814 kb on - strand, within Ac3H11_4045at 290.140 kb on + strand, within Ac3H11_4045at 290.140 kb on + strand, within Ac3H11_4045at 290.140 kb on + strand, within Ac3H11_4045at 290.140 kb on + strand, within Ac3H11_4045at 290.141 kb on - strand, within Ac3H11_4045at 290.141 kb on - strand, within Ac3H11_4045at 290.200 kb on + strand, within Ac3H11_4045at 290.201 kb on - strand, within Ac3H11_4045at 290.201 kb on - strand, within Ac3H11_4045at 290.201 kb on - strand, within Ac3H11_4045at 290.201 kb on - strand, within Ac3H11_4045at 290.302 kb on + strandat 290.354 kb on + strandat 290.354 kb on + strandat 290.354 kb on + strandat 290.354 kb on + strandat 290.354 kb on + strandat 290.354 kb on + strandat 290.355 kb on - strandat 290.355 kb on - strandat 290.355 kb on - strandat 290.355 kb on - strandat 290.355 kb on - strandat 290.402 kb on + strandat 290.402 kb on + strandat 290.402 kb on + strandat 290.402 kb on + strandat 290.403 kb on - strandat 290.403 kb on - strandat 290.423 kb on + strandat 290.423 kb on + strandat 290.448 kb on + strandat 290.448 kb on + strandat 290.448 kb on + strandat 290.449 kb on - strandat 290.490 kb on + strandat 290.490 kb on + strandat 290.490 kb on + strandat 290.491 kb on - strandat 290.491 kb on - strandat 290.491 kb on - strandat 290.491 kb on - strandat 290.491 kb on - strandat 290.494 kb on + strandat 290.494 kb on + strandat 290.494 kb on + strandat 290.494 kb on + strandat 290.494 kb on + strandat 290.494 kb on + strandat 290.494 kb on + strandat 290.494 kb on + strandat 290.494 kb on + strandat 290.495 kb on - strandat 290.495 kb on - strandat 290.495 kb on - strandat 290.495 kb on - strandat 290.495 kb on - strandat 290.495 kb on - strandat 290.495 kb on - strandat 290.495 kb on - strandat 290.495 kb on - strandat 290.560 kb on + strandat 290.560 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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287,760 + +1.2
287,760 + +0.5
287,760 + +0.4
287,761 - -0.5
287,761 - -0.6
287,761 - -1.9
288,033 + Ac3H11_4043 0.30 -1.1
288,034 - Ac3H11_4043 0.30 +0.3
288,285 + Ac3H11_4043 0.60 -0.1
288,286 - Ac3H11_4043 0.60 +0.0
288,286 - Ac3H11_4043 0.60 -0.9
288,286 - Ac3H11_4043 0.60 -0.7
288,286 - Ac3H11_4043 0.60 -1.2
288,286 - Ac3H11_4043 0.60 -1.2
288,286 - Ac3H11_4043 0.60 -0.7
288,286 - Ac3H11_4043 0.60 -0.4
288,315 + Ac3H11_4043 0.63 -0.7
288,315 + Ac3H11_4043 0.63 -0.3
288,316 - Ac3H11_4043 0.63 -1.0
288,316 - Ac3H11_4043 0.63 +0.2
288,324 + Ac3H11_4043 0.64 +0.1
288,324 + Ac3H11_4043 0.64 -0.3
288,324 + Ac3H11_4043 0.64 -1.2
288,324 + Ac3H11_4043 0.64 -0.9
288,324 + Ac3H11_4043 0.64 -1.0
288,324 + Ac3H11_4043 0.64 -0.6
288,324 + Ac3H11_4043 0.64 -0.5
288,324 + Ac3H11_4043 0.64 +0.8
288,325 - Ac3H11_4043 0.64 -0.9
288,325 - Ac3H11_4043 0.64 +2.6
288,325 - Ac3H11_4043 0.64 -0.9
288,325 - Ac3H11_4043 0.64 +0.0
288,325 - Ac3H11_4043 0.64 -1.0
288,327 + Ac3H11_4043 0.64 -2.4
288,328 - Ac3H11_4043 0.65 -1.0
288,400 - Ac3H11_4043 0.73 -0.4
288,630 + -0.1
288,631 - -0.3
288,631 - -0.2
288,784 + -0.5
288,785 - -3.4
288,872 - Ac3H11_4044 0.14 -1.2
288,872 - Ac3H11_4044 0.14 -3.3
289,063 + Ac3H11_4044 0.36 -2.1
289,064 - Ac3H11_4044 0.36 -3.3
289,064 - Ac3H11_4044 0.36 -2.9
289,064 - Ac3H11_4044 0.36 -2.5
289,298 + Ac3H11_4044 0.64 -2.1
289,423 + Ac3H11_4044 0.78 -0.1
289,423 + Ac3H11_4044 0.78 -3.9
289,423 + Ac3H11_4044 0.78 -2.4
289,424 - Ac3H11_4044 0.78 -3.4
289,424 - Ac3H11_4044 0.78 -3.3
289,424 - Ac3H11_4044 0.78 -3.6
289,435 + Ac3H11_4044 0.80 -1.7
289,435 + Ac3H11_4044 0.80 -3.2
289,435 + Ac3H11_4044 0.80 -3.2
289,435 + Ac3H11_4044 0.80 -3.1
289,435 + Ac3H11_4044 0.80 -3.4
289,435 + Ac3H11_4044 0.80 -4.2
289,436 - Ac3H11_4044 0.80 +0.9
289,436 - Ac3H11_4044 0.80 -3.5
289,436 - Ac3H11_4044 0.80 -3.5
289,436 - Ac3H11_4044 0.80 -2.2
289,436 - Ac3H11_4044 0.80 -2.1
289,436 - Ac3H11_4044 0.80 -2.2
289,436 - Ac3H11_4044 0.80 -3.2
289,436 - Ac3H11_4044 0.80 -3.1
289,436 - Ac3H11_4044 0.80 -2.1
289,436 - Ac3H11_4044 0.80 -4.4
289,814 - Ac3H11_4045 0.25 -1.1
290,140 + Ac3H11_4045 0.70 -0.7
290,140 + Ac3H11_4045 0.70 -1.4
290,140 + Ac3H11_4045 0.70 -0.0
290,140 + Ac3H11_4045 0.70 -1.0
290,141 - Ac3H11_4045 0.70 +0.6
290,141 - Ac3H11_4045 0.70 +0.0
290,200 + Ac3H11_4045 0.78 +0.7
290,201 - Ac3H11_4045 0.78 +0.5
290,201 - Ac3H11_4045 0.78 -1.4
290,201 - Ac3H11_4045 0.78 -0.1
290,201 - Ac3H11_4045 0.78 +1.1
290,302 + +0.9
290,354 + +1.3
290,354 + +0.0
290,354 + -0.1
290,354 + -1.6
290,354 + +0.3
290,354 + +0.2
290,355 - -2.0
290,355 - -0.1
290,355 - -1.4
290,355 - -0.4
290,355 - -0.5
290,402 + -0.9
290,402 + -0.0
290,402 + -0.4
290,402 + -0.5
290,403 - -0.9
290,403 - -0.9
290,423 + -0.5
290,423 + +0.4
290,448 + +1.8
290,448 + -0.5
290,448 + -0.2
290,449 - -1.2
290,490 + -0.7
290,490 + +0.3
290,490 + +0.5
290,491 - +0.8
290,491 - -0.2
290,491 - +0.1
290,491 - -0.6
290,491 - +0.6
290,494 + +0.3
290,494 + +0.1
290,494 + +0.1
290,494 + -0.4
290,494 + +0.4
290,494 + -0.1
290,494 + -0.2
290,494 + -0.7
290,494 + -0.5
290,495 - -0.3
290,495 - -0.4
290,495 - -0.7
290,495 - -1.5
290,495 - -1.2
290,495 - -0.3
290,495 - -0.9
290,495 - -0.7
290,495 - -1.0
290,560 + +1.4
290,560 + +0.2

Or see this region's nucleotide sequence