Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2160

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2158 and Ac3H11_2159 overlap by 4 nucleotidesAc3H11_2159 and Ac3H11_2160 are separated by 166 nucleotidesAc3H11_2160 and Ac3H11_2161 are separated by 535 nucleotides Ac3H11_2158 - Inner membrane protein CreD, at 387,120 to 388,625 _2158 Ac3H11_2159 - hypothetical protein, at 388,622 to 388,990 _2159 Ac3H11_2160 - sensory box histidine kinase/response regulator, at 389,157 to 389,822 _2160 Ac3H11_2161 - Hemerythrin-like protein RSc0777, at 390,358 to 390,894 _2161 Position (kb) 389 390Strain fitness (log2 ratio) -3 -2 -1 0 1at 388.167 kb on + strand, within Ac3H11_2158at 388.168 kb on - strand, within Ac3H11_2158at 388.168 kb on - strand, within Ac3H11_2158at 388.248 kb on + strand, within Ac3H11_2158at 388.287 kb on + strand, within Ac3H11_2158at 388.288 kb on - strand, within Ac3H11_2158at 388.288 kb on - strand, within Ac3H11_2158at 388.290 kb on + strand, within Ac3H11_2158at 388.290 kb on + strand, within Ac3H11_2158at 388.290 kb on + strand, within Ac3H11_2158at 388.290 kb on + strand, within Ac3H11_2158at 388.291 kb on - strand, within Ac3H11_2158at 388.291 kb on - strand, within Ac3H11_2158at 388.291 kb on - strand, within Ac3H11_2158at 388.291 kb on - strand, within Ac3H11_2158at 388.325 kb on + strand, within Ac3H11_2158at 388.326 kb on - strand, within Ac3H11_2158at 388.356 kb on + strand, within Ac3H11_2158at 388.356 kb on + strand, within Ac3H11_2158at 388.356 kb on + strand, within Ac3H11_2158at 388.356 kb on + strand, within Ac3H11_2158at 388.356 kb on + strand, within Ac3H11_2158at 388.356 kb on + strand, within Ac3H11_2158at 388.357 kb on - strand, within Ac3H11_2158at 388.357 kb on - strand, within Ac3H11_2158at 388.357 kb on - strand, within Ac3H11_2158at 388.368 kb on + strand, within Ac3H11_2158at 388.368 kb on + strand, within Ac3H11_2158at 388.368 kb on + strand, within Ac3H11_2158at 388.368 kb on + strand, within Ac3H11_2158at 388.368 kb on + strand, within Ac3H11_2158at 388.368 kb on + strand, within Ac3H11_2158at 388.368 kb on + strand, within Ac3H11_2158at 388.369 kb on - strand, within Ac3H11_2158at 388.369 kb on - strand, within Ac3H11_2158at 388.369 kb on - strand, within Ac3H11_2158at 388.369 kb on - strand, within Ac3H11_2158at 388.369 kb on - strand, within Ac3H11_2158at 388.369 kb on - strand, within Ac3H11_2158at 388.369 kb on - strand, within Ac3H11_2158at 388.369 kb on - strand, within Ac3H11_2158at 388.470 kb on + strand, within Ac3H11_2158at 388.470 kb on + strand, within Ac3H11_2158at 389.061 kb on + strandat 389.061 kb on + strandat 389.061 kb on + strandat 389.061 kb on + strandat 389.062 kb on - strandat 389.062 kb on - strandat 389.062 kb on - strandat 389.062 kb on - strandat 389.062 kb on - strandat 389.062 kb on - strandat 389.063 kb on + strandat 389.063 kb on + strandat 389.063 kb on + strandat 389.064 kb on - strandat 389.064 kb on - strandat 389.064 kb on - strandat 389.104 kb on - strandat 389.111 kb on - strandat 389.123 kb on + strandat 389.123 kb on + strandat 389.124 kb on - strandat 389.127 kb on + strandat 389.127 kb on + strandat 389.127 kb on + strandat 389.127 kb on + strandat 389.127 kb on + strandat 389.127 kb on + strandat 389.128 kb on - strandat 389.128 kb on - strandat 389.128 kb on - strandat 389.128 kb on - strandat 389.128 kb on - strandat 389.128 kb on - strandat 389.128 kb on - strandat 389.128 kb on - strandat 389.128 kb on - strandat 389.128 kb on - strandat 389.128 kb on - strandat 389.132 kb on - strandat 389.132 kb on - strandat 389.137 kb on + strandat 389.137 kb on + strandat 389.138 kb on - strandat 389.150 kb on + strandat 389.150 kb on + strandat 389.150 kb on + strandat 389.150 kb on + strandat 389.150 kb on + strandat 389.151 kb on - strandat 389.151 kb on - strandat 389.151 kb on - strandat 389.151 kb on - strandat 389.158 kb on + strandat 389.158 kb on + strandat 389.158 kb on + strandat 389.158 kb on + strandat 389.158 kb on + strandat 389.159 kb on - strandat 389.200 kb on + strandat 389.201 kb on - strandat 389.201 kb on - strandat 389.201 kb on - strandat 389.201 kb on - strandat 389.637 kb on - strand, within Ac3H11_2160at 389.637 kb on - strand, within Ac3H11_2160at 389.816 kb on + strandat 389.849 kb on + strandat 389.849 kb on + strandat 389.885 kb on + strandat 389.885 kb on + strandat 389.886 kb on - strandat 390.095 kb on + strandat 390.095 kb on + strandat 390.273 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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388,167 + Ac3H11_2158 0.70 +0.2
388,168 - Ac3H11_2158 0.70 +0.3
388,168 - Ac3H11_2158 0.70 -0.9
388,248 + Ac3H11_2158 0.75 -0.2
388,287 + Ac3H11_2158 0.77 -0.4
388,288 - Ac3H11_2158 0.78 -0.1
388,288 - Ac3H11_2158 0.78 -0.3
388,290 + Ac3H11_2158 0.78 -2.3
388,290 + Ac3H11_2158 0.78 -0.8
388,290 + Ac3H11_2158 0.78 -0.3
388,290 + Ac3H11_2158 0.78 -0.7
388,291 - Ac3H11_2158 0.78 -0.2
388,291 - Ac3H11_2158 0.78 -0.9
388,291 - Ac3H11_2158 0.78 -0.4
388,291 - Ac3H11_2158 0.78 -0.7
388,325 + Ac3H11_2158 0.80 -0.9
388,326 - Ac3H11_2158 0.80 -0.8
388,356 + Ac3H11_2158 0.82 -0.5
388,356 + Ac3H11_2158 0.82 +1.1
388,356 + Ac3H11_2158 0.82 -0.6
388,356 + Ac3H11_2158 0.82 -0.9
388,356 + Ac3H11_2158 0.82 +1.3
388,356 + Ac3H11_2158 0.82 -1.1
388,357 - Ac3H11_2158 0.82 -1.1
388,357 - Ac3H11_2158 0.82 +0.2
388,357 - Ac3H11_2158 0.82 -0.9
388,368 + Ac3H11_2158 0.83 -0.3
388,368 + Ac3H11_2158 0.83 -0.4
388,368 + Ac3H11_2158 0.83 -1.2
388,368 + Ac3H11_2158 0.83 -1.6
388,368 + Ac3H11_2158 0.83 -0.8
388,368 + Ac3H11_2158 0.83 -0.8
388,368 + Ac3H11_2158 0.83 -2.6
388,369 - Ac3H11_2158 0.83 -0.0
388,369 - Ac3H11_2158 0.83 -2.2
388,369 - Ac3H11_2158 0.83 +0.4
388,369 - Ac3H11_2158 0.83 -0.2
388,369 - Ac3H11_2158 0.83 -0.6
388,369 - Ac3H11_2158 0.83 -0.6
388,369 - Ac3H11_2158 0.83 +0.3
388,369 - Ac3H11_2158 0.83 -0.7
388,470 + Ac3H11_2158 0.90 -0.2
388,470 + Ac3H11_2158 0.90 -0.9
389,061 + -0.5
389,061 + -1.7
389,061 + -0.4
389,061 + +0.2
389,062 - -2.5
389,062 - -0.6
389,062 - -0.2
389,062 - -0.5
389,062 - -1.0
389,062 - -0.7
389,063 + +1.6
389,063 + -0.9
389,063 + -0.6
389,064 - -0.6
389,064 - -0.2
389,064 - -0.6
389,104 - -1.8
389,111 - -0.5
389,123 + -0.2
389,123 + -0.6
389,124 - -0.3
389,127 + -0.6
389,127 + -0.2
389,127 + -0.2
389,127 + +0.3
389,127 + +0.1
389,127 + -0.4
389,128 - +0.5
389,128 - +0.8
389,128 - +0.2
389,128 - -0.3
389,128 - -0.3
389,128 - -0.9
389,128 - +0.6
389,128 - -0.4
389,128 - -0.3
389,128 - -0.2
389,128 - +0.8
389,132 - -0.7
389,132 - -0.5
389,137 + -1.0
389,137 + -0.7
389,138 - -0.9
389,150 + +0.1
389,150 + -1.6
389,150 + -0.1
389,150 + -3.4
389,150 + -2.6
389,151 - -0.8
389,151 - -0.4
389,151 - +0.5
389,151 - -1.0
389,158 + +0.4
389,158 + -1.7
389,158 + -1.0
389,158 + -0.3
389,158 + -0.5
389,159 - -1.3
389,200 + -1.1
389,201 - -0.6
389,201 - -0.1
389,201 - -0.5
389,201 - +0.1
389,637 - Ac3H11_2160 0.72 -0.6
389,637 - Ac3H11_2160 0.72 -1.8
389,816 + -0.3
389,849 + -0.2
389,849 + -0.6
389,885 + -0.3
389,885 + +1.7
389,886 - -0.2
390,095 + -0.5
390,095 + +0.1
390,273 - -0.5

Or see this region's nucleotide sequence